RNA id: XM_007238406.3


Basic Information

Item Value
RNA id XM_007238406.3
length 3740
RNA type mRNA
GC content 0.51
exon number 16
gene id intu
representative False

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 14570369 ~ 14598691 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TATTGTTTTTGAGTCTACCAACGGAAAGCTTTATTGTTGCCAGGGCAACGGGAACTTTCCGCCAATCACGCTTCGACTGTACATCACGCGGCGCTGTTGAAGGACCCGTATGTTGACAACATGGCGATGGGTTCTCTTCTCTCATCCCtaaacagaaggagaaatagACGCATATAAAGCGTTTTAATGAGCAGAAACGGTTGATTTTTTTAGTGTAGAGTGTAAAGAACATGCAGGCATGGCTGCTATCCGGGCTGAGGAGCGTTTCAGTGAGAGGGAAGAAGGCGAGCAGAGGGAGGTGCTGGGAAGCGATTCAGACTCCACTGCCTCCAGTTACAGTTACTCCGACTGTTCAGAtGAGCTTGAGCCTGAGTGGCTGGATGAAGTCCAAAAGAATGGTGAGCTGTTCTATCTGGAGCTGAGTGAGGGCGAAGAGGAGGCTGTGCTAGCCCAGGTCTCCGCCAGTCAATCGGCTGCCACCAATCATGTGCGCTTCAGTGAAAAAGAGGCAGAGATCATCACTGAGCAGGGCAAGAAACAAAGGGACTCCAACACAAAATCGgacacaaaactaaaaaaaaagctagctaAGATACTGGGGCGCAAACGGCGGCCGTCTCAAAGGAAAGGGGCTGATGGGAAAGATGGCAGATCTTCTCAGCAGCCCGCCTCCATACTGAAGAACCAGACAGGACAGCGGGCCGGACTGGTTGTGCAGCAGCCGCATCTTAAGGATGTATGTGTTTACTTGAACCCTAAACGACTGAGCAGCATTTCTCCGTCTACTCCAGAGAAAGGAGGACTACTGGAAGCTTTGCTGGGCGTGGTCCACCGGGGAGGAGACAACCGAAGCCGTACGGGAGAAAAGCTCTTTATCCACGGTCTAGTACCTCATAGTCCTGCAAGCAAGTGTGCGCAGATTTTAATTGGTGATGTTCTTGTTGCTGTTGATGACGTGGATGTTACATCAGAAAATATCGAAAGAGTTCTCTCATGTATTCCTGGACCaacacagGTGCGGTTGACTCTGGAGACGGCCAGTGTGGGCAGGATCGGTGTGGAACCAGTGACGCCCAGGTCGAGAACTTCTCCACCAGTCAGCCAGCTGGTTCGCCTTCTCTGGGGAGAGGATACCATGGAGCTGCAGATGTCTGTAGCACATATACCTCATATTGTCATGTACCTGTCACTCAAACTGGACTCCGAGTCACCTCAGGAGGAGCAGGAGATCCTGTACCAGTACCCACTGTCTGAGGCCGCAATGCAGCTAAAAGGAGTAAGAGGTATCTTTCTCACACTGTGTGACATGCTGGAGAATGTCACTGGAGGACAGATTGTCAGTTCCTCTCTGTTGCTCAGGAAGCAGCTGGTGCATGTGGGTTACTGGAAGGAGGGTGCCAACCTGCTGGTGATTGGCCTGCCAGCTGACAGGGTGCCGTTGCTGCATCTGCAGACTGTAATTGAGGGAGTGGTGCGCACACTTCGGGTTATGTATGGCTCTCTGGACAGtgCGTTCTGTGAAGGAGAGAACACTCCTCGTTTGGATCATTTCTTCTGCCTGTTcttccagcagctcctccagccATCTCGTTTGAGTGACGGCTCCTGTCCCTCTTCTCTAGATGTCTCCGGGACACTGTTTCTGGACGGATTACCAGCAGTTCGGTGGCTCACTTTACCACCAGACATCAAGGTTGAGGTGGACACTGTTCTTTCAGACTTTGAGGCTTCAGATTTTGGTGACATGTCCGAAGACTCCTACGGCATGAGACGTCTGTATGTCACTCTGGGTTCCTGTCTCTTCTACAAGGGTTATCTTATCGCGAACCACCTCCCTAAGGAGGACCTGCTGGATGTGTGTTTGTACTGCCAGCACTACTGTCTCCTTGCCCTGCCCACAGAGCAGCGTGTGGGTCAGCTGGTGGTGTGGAGGGAGGTGTTTCCACAACGTCGCACACAGCCCAGCCCCCTCACCCCACGTCTGGGCTACTGTGAGCCCCACGCACGTTACTTTCTCCTGATTGTTGGATTGAGGCACTTTATGCAGTGTGTTTTACTAGAGGCCGGTGGTTGTGCGTCCCCGGCTGTTGGATCCCCTGGTCCTGACTGTATTTATGTAGACCAAGTCAAAGCCACTCTCCTCCAGCTGGAGAGCCTCGACTCGGCCATTGAAGAGCGGCTCTGTGCTCCACCCACCCCATGCCTCTCCTGTGCTGACTGGTTTATTCCCTCCGGTGGACGGGACCGCCTGGATGGAATTGGCAGCTCACCTATCCTCAACCGGCTCACAGCTGCCATCAAGCCCCCCTCTTCCAGCGTGATTGGCCGTACTCTGTTTGGAGAGTCGGGTTCAGGCTCTGGTGGTGCAGGACTGAAGGGCAGAAGGCCAAGCCCTCAGAGGAGTCTTTCAGACAGCGGGAGTGAGGGCCGTGGGGAGACCTCTGTGACCTTTACGCTGGCACATAGTCCTCACACTACACCCGATGCTGCGCGCAGGATGCCCTCTGGTGGCTCACGCAGGGACTCACTGGGGTCCGGAGGTTCAGACGGCAGCGGGGGCAGCGGTGGACTGTTTAAGATGCCCAGACTGAAGCAGCCAAACCCGTTCTATCTGGGTTCTCTGAGGAAAAGTCTGACGGACAAAGAGACGGAGGAGATGCAGAATATTCTAAAgctcACAGCAGGAGTGGAAAACACTCTCTTCCACTATGTTCTTATGGAGACGGTGCAGGGTATCTTTATCGCGCCCACACACAGAGAGGTTTCCCAGCTCAGCGGCTCTATCCACCCTCAGCTCATCCGCAACTTCCACCACTGCTGTCTGTCCATACGGCACGCCTTCCAGCAGAGTCTACCACCacggGAACGGCGAGGAGCTGACAGGCCTCAGGCTTCTCGAGGGCTTGGTCCTGTTAAAGAACATGGTGTTCTGTTTCAGTGCAAACCAGAGAACTGGACTGACCAAAAGAAACCTCCCCCCACCATGACATACTGGGTCATCggGCGGATGGTCCTAGAACCTGTACCTCAGGAGTTCTATGTGTGTTTCCATGACTCTGTGGCAGAGGTTCCTGTGGAGATGGCTTTCAGACTGTCATTTGGATTGGCCATGTGATGTTCCTTCAGCGACGCTTCAGCCCTTCTCGGACCCACCAATATGGGATCTTTCTCCACCTGTGGTAGAGGAACACAAGTCTGATGCACACAGTTTTGGGAAATGTTTTCCACAAGAAATAAGGGCCCCTTACTCGGCTAATGAGGAAAACATGTTGGAAACTGTGTAAACTTCAATTCAGGCATAGTTGTTTATAGCAATCGAGAGGGAACAAGGAATTGAGTTCAGTTTTGGCACTTGATAAAAGTCAGTGCTTGGGTTCTTGTATAGATGGTCTTCAGATGAATAGCCTTTCTAGTGAACCCAGTGCTTTGCGGGACTTCTGACTGGTTGGGAGACCGTGTGATAAAAATCTCAACAGTTATACCTCAGGTATTGTGCTATATTATACCAAAAAAtaggacagaaaaaaaatctgacttaAACTGAGAAGCTTGAAGAAAACAATACAAGCGCTCACATTTATACTTCACATTATTATTGGGAGAAACCTTGTTTTAGTTTTGGCCTGTACATAGCTCTGGAAGTCTTAACACCTGTATGTTTAAggtgtttaatgtgttaaatgtacaggggttggacaatgaaactgaaacacctggttttagatcacaataatgtattg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU191625 lncRNA upstream 4420 14565384 ~ 14567961 (+) True G141525
TU191615 lncRNA upstream 19292 14552633 ~ 14553089 (+) True G141516
TU191613 lncRNA upstream 25342 14545797 ~ 14547039 (+) True G141514
XR_002650986.1 lncRNA upstream 53937 14517346 ~ 14518444 (+) True LOC111194203
TU191590 lncRNA upstream 85764 14485020 ~ 14486617 (+) False G141501
TU191650 lncRNA downstream 43789 14642480 ~ 14642690 (+) True G141548
TU191638 lncRNA downstream 185380 14784071 ~ 14784812 (+) False b4gat1
TU191645 lncRNA downstream 186259 14784950 ~ 14786374 (+) True G141543
TU191880 lncRNA downstream 228590 14827281 ~ 14829927 (+) True G141711
TU191892 lncRNA downstream 258078 14856769 ~ 14861370 (+) False G141720
XM_007238407.3 mRNA upstream 20808 14548108 ~ 14551573 (+) True trmt10b
XM_022677715.1 mRNA upstream 55307 14515470 ~ 14517074 (+) True LOC111194241
XM_022677714.1 mRNA upstream 59442 14511793 ~ 14512939 (+) True LOC111194240
XM_022677713.1 mRNA upstream 72191 14488431 ~ 14500190 (+) True LOC103041924
XM_022677712.1 mRNA upstream 83960 14477554 ~ 14488421 (+) True LOC111194238
XM_007238403.3 mRNA downstream 1835 14600526 ~ 14617363 (+) False aadat
XM_007238404.3 mRNA downstream 5623 14604314 ~ 14617363 (+) False aadat
XM_022678081.1 mRNA downstream 5737 14604428 ~ 14617363 (+) True aadat
XM_007238402.3 mRNA downstream 23466 14622157 ~ 14628563 (+) True mfap3l
XM_015602756.2 mRNA downstream 34387 14633078 ~ 14647184 (+) False LOC103039980
TU191577 other upstream 42085 14528140 ~ 14530296 (+) True G141495
TU191433 other upstream 371383 14180665 ~ 14200998 (+) True G141410
TU191361 other upstream 713776 13855603 ~ 13858605 (+) True G141361
TU191033 other upstream 1722439 12842814 ~ 12849942 (+) False LOC103029537
TU191019 other upstream 1828928 12741473 ~ 12743453 (+) True G141086
TU191927 other downstream 455966 15054657 ~ 15056973 (+) True G141740
TU192022 other downstream 630019 15228710 ~ 15285457 (+) True G141791
TU191950 other downstream 786925 15385616 ~ 15390415 (+) True G141754
trnae-uuc_20 other downstream 815085 15413776 ~ 15413847 (+) True trnae-uuc_20
XR_002651027.1 other downstream 2349691 16948382 ~ 16967950 (+) True LOC103022185

Expression Profile