RNA id: XM_007238479.3


Basic Information

Item Value
RNA id XM_007238479.3
length 1859
RNA type mRNA
GC content 0.50
exon number 3
gene id LOC103038426
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 14812279 ~ 14817396 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATGCTAATAGCATCCCGCTATAAATACGCTTGACTTCTGGTCTTCCTTCTTTACTAGAAGAGAGGCTGGCAGGGCAAAGACTCTGCTCTTTTACCGAGAAATCACACAGCAAATTATATAACCGCTAAACGCTACAAGCTGGATTTTGAAAGGTGTAACACTTTCCTATAATAGACTCAACTTAAGTTGTAATCCAGGCGAGGCATTTTTTTGCAACAGTTGAGCCACTTGAGCTCGCGTCTGGGAGAAGATGAACAGAGAGCTTTAGTGCAGTCCTGCGAACTAGACCCATCTTCTCTTTGATCTCGGTGGGTTTTGAAGCTAAAGAAGCAGGTCAGACGAACCATGTTCCCTTTGCCAATGTTCACACCTGACCAGGTGGCTCGAGTGTGTGAAAACCTGGAGGAGACGGGAGATATGGAGCGTTTGGGACGCTTCCTGTGGTCCCTGCCGGCGGCGGTCCCCGGGGCGGCCGGAGAGGCCCTCAACCGTCACGAGTCTGTGATGCGCGCCAGGGCCCTGGTGGCCTTTCACGGGGGGAACTTCGAGGCCCTCTATCAGATCCTGCAGAACCACAGATTCACACGCGAGTCTCACGCCAAGCTGCAGGACCTGTGGCTGGACGCTCACTACCGCGAGGCCGAGCGCCTGAGAGGGAGGCCCCTGGGGCCCGTGGAGAAGTACAGGATCCGCAAGAAGTTCCCACTACCCCGAACCATCTGGGACGGAGAACAGAAAACACACTGCTTTAAGGAGAGGACGCGTAGTTTGCTAAGAGAGTGGTACCTGCAGGACCCGTACCCCAACCCATCCCGCAAGCGCCACCTGGCCCAGGCCACAGGCCTCACACCCACACAGGTGGGCAACTGGTTCAAGAACAGACGGCAAAGAGACAGAGCAGCATCAGCCAAAAACAGATTGCAACAAGACCCCTCCCTGCACCCCTCAGGCAGCTCTCCTGAATGTTCATCTTTAGAGCACCACCCCCACCTGCACGGCTCCTCCCCACGACACCCCTGCAGCCCAGAGAACAGTGACTGCAGCTCAAGTACAGAGCCCCAGGGCACCAGGGCCTCCACGCCTGACATATCCGTCAGCAGCGACAGCGAATACGAGTCCTGAGCACAGCTACAGACCGCTGTGCCCCACAACCAGAACCACACACTCCTGCTGACCCTCAGAGACTGACAGAGAGACTGACAGAGAGCCGCAGGCAGCATACGCTTACAGTAGACTGCCTTCAGCTGAGACATGCAGATATGGGTCAGTGTGGAGACTGGGGAACATTGCTGTGATCTGTGAGGAGCAGATGGACCGGATGTGTGACGGGAAAGGGAGCTTTGGCAAATGTTCAGACATGCACTTATAAATGGACTTCAGGGTACTGTTGTGAAATCAAATGAAAAGGGAAATGTAATCAGTGTCTTTCATTACTACCCCTCCCCTTTGTGACAAGAGGTGTAAAGATATTTGGCATTTCTTACAGTTGAACAGGCAGAGGAAAGAGACTCTGCGTTCATTCATTTAATGttgaaacattttcttttttctgacgTTTCTCTCTATTATTGTTCTCTAACTGAACCTTATAATGGACCCATGCACTTGAATCAGAACACGTTTTCAGTGATACTTGTGTAAGGGGTGTGCCAAATAAATCACATAAACCAGGACCAATATCAATATCTGCTGTTACCATCAAAGCTGCTTTGTTTTCCTTTGCATTTCTTCACTCTTCTTCTTTAAGCAAAAaccatttttgcagtttttcacATTTCAATTGAGTGGTTGTCCTTGTTTTaaaaatttcatgatgaatggaccaacagaaatgctgcaacatgacttgaaataaaatc

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0048596 embryonic camera-type eye morphogenesis biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K19473 SIX3_6, OPTIX; homeobox protein SIX3/6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU191645 lncRNA upstream 25905 14784950 ~ 14786374 (+) True G141543
TU191638 lncRNA upstream 27467 14784071 ~ 14784812 (+) False b4gat1
TU191650 lncRNA upstream 169589 14642480 ~ 14642690 (+) True G141548
TU191625 lncRNA upstream 244318 14565384 ~ 14567961 (+) True G141525
TU191615 lncRNA upstream 259190 14552633 ~ 14553089 (+) True G141516
TU191880 lncRNA downstream 9885 14827281 ~ 14829927 (+) True G141711
TU191892 lncRNA downstream 39373 14856769 ~ 14861370 (+) False G141720
TU191890 lncRNA downstream 43088 14860484 ~ 14861370 (+) True G141720
TU191900 lncRNA downstream 145917 14963313 ~ 14995475 (+) False G141724
TU191898 lncRNA downstream 158996 14976392 ~ 15000325 (+) False G141724
XM_007238478.3 mRNA upstream 27604 14779181 ~ 14784675 (+) True b4gat1
XM_022678085.1 mRNA upstream 40278 14759152 ~ 14772001 (+) True LOC103034986
XM_022678086.1 mRNA upstream 65584 14739009 ~ 14746695 (+) True LOC111194324
XM_022678087.1 mRNA upstream 80049 14726334 ~ 14732230 (+) True LOC111188221
XM_007238391.3 mRNA upstream 103603 14705852 ~ 14708676 (+) True pfdn2
XM_007238480.3 mRNA downstream 1549 14818945 ~ 14827063 (+) True LOC103038739
XM_007236091.3 mRNA downstream 504615 15322011 ~ 15366331 (+) True LOC103042634
XM_022677716.1 mRNA downstream 550122 15367518 ~ 15375404 (+) True LOC111194243
XM_007236093.2 mRNA downstream 558569 15375965 ~ 15378535 (+) True LOC103043145
XM_015602108.2 mRNA downstream 562282 15379678 ~ 15384906 (+) True LOC103043450
TU191577 other upstream 281983 14528140 ~ 14530296 (+) True G141495
TU191433 other upstream 611281 14180665 ~ 14200998 (+) True G141410
TU191361 other upstream 953674 13855603 ~ 13858605 (+) True G141361
TU191033 other upstream 1962337 12842814 ~ 12849942 (+) False LOC103029537
TU191019 other upstream 2068826 12741473 ~ 12743453 (+) True G141086
TU191927 other downstream 237261 15054657 ~ 15056973 (+) True G141740
TU192022 other downstream 411314 15228710 ~ 15285457 (+) True G141791
TU191950 other downstream 568220 15385616 ~ 15390415 (+) True G141754
trnae-uuc_20 other downstream 596380 15413776 ~ 15413847 (+) True trnae-uuc_20
XR_002651027.1 other downstream 2130986 16948382 ~ 16967950 (+) True LOC103022185

Expression Profile