RNA id: XM_007240015.2


Basic Information

Item Value
RNA id XM_007240015.2
length 1970
RNA type mRNA
GC content 0.47
exon number 11
gene id LOC103034112
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 18794903 ~ 18816397 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TACTGTAGCCGGAGCAAGATATCAGCTTTACTGTAATCAGGGACAGCtgggggcagagagagagagaaagagagatagagagagagacaagcagggaaagaggagagagaggggaacaGGGGGCTGTAGTCCAAATAACACATCCCACCCCTCCCTGTCTCGGTCCGCTTTCTGCGGGGCAGGTTAATCTGCAGCAGCAGTCTGTGATACTGACGGCTGGAGGGGAGAGTTACAGAGCTACCTACCCGAACAAGCGCGGAGGGACCACGGCAGAGGATCCAGAGAGTGGACGGCTGGACGGCTGACTCGTCTTCTTGGTTCTTGTCAGCTTCtccgtgcgtgtgtgtgtgagagagtgagtgtgtgtgtatgagtgagtgagagaaaaagagtgtgtttgtgtgtttgttgctcACGATGGGAAACGCTGCGGCCGCCAAAAAGGGCAACGAGCTGGAGAGCGAGACTTTTGtaAAAGAGTTTTTAGCCAAAGCCAAAGAAGATTTCCTCAGAAAATGGGAATGTCCACCACAGAGCACCACTACTCTAGATGACTTTGAGAGACTGAAGACTCTCGGCACAGGCTCTTTCGGCAGGGTCATGTTGGTAAAACACAAAGGAACAGAGCAGTTCTTCGCCATGAAAGTCCTGGATAAACAAAAGGTGGTAAAATTGAAGCAAATAGAACACACACTAAACGAGAAGAGAATACTACAGGCAGTATCGTTCCCCTTCCTCGTCAGACTGGAATATTCCTTCAAGGATAATTCCAATTTGTATATGGTGATGGAGTATGTACCGGGTGGTGAGATGTTTTCACATCTAAGAAGAATCGGCAGGTTCAGTGAACCACATGCGCGGTTTTACGCAGCACAGATAGTCCTGACCTTTGAGTACCTCCACTCGCTAGACCTCATCTACAGAGACTTGAAGCCTGAGAACCTGCTGATCGATCAGCACGGATACATCCAGGTCACTGACTTTGGGTTTGCAAAAAGAGTGAAGGGCAGAACCTGGACGTTGTGTGGAACCCCAGAGTACCTGGCACCAGAAATCATTCTTAGCAAGGGGTACAACAAAGCTGTGGACTGGTGGGCACTGGGGGTGCTCATATATGAAATGGCTGCTGGGTATCCTCCATTCTTCGCAGACCAGCCCATTCAGATCTATGAGAAGATTGTGTCTGGAAAGGTACGATTTCCATCCCACTTTAGTTCCGATTTGAAAGACCTGCTGAGGAATTTGCTTCAGGTCGATCTGACGAAGCGGTACGGCAACCTCAAGAACGGCGTCAATGACATTAAAAACCACAAATGGTTTGCTACAACAGACTGGATTGCCATCTACGAGAGGAAGGTGGAAGCTCCATTCATACCAAAGTGCAGAGGCCCCGGAGATACGAGCAACTTCGACGACTACGAGGAGGAGGACATCCGCGTATCTGTTACAGAAAAATGCGCGAAAGAATTCACAGAGTTTTAGTAGTGTGGACATATCAGAGCTATacgtatacgtatatatacgtatatatacgtatatatatatatatatatataatacgaGTGTGGGACTGTGTGCGTGTGGATgcgtgtgtgggtgtgagtgtgtgggtgtgggtgtgtgtgtgtatatatcacACAACAGACAAAATAAGGAGGGGATCTTTGCACTCTGAAGACACAGAGACGGAGCAGAGACCACATCACCAAACAAAGTTCCTGCATAGTTCCTTCATTCCATCTGCTCAACCGGGCCCTCGTGCTTCGACAGCGCTTTTCTCGTTACGCCACGCAACACTCGTCCTGCATTTTACTCGTTTTCTCTTCTGTTGTTTTACTTTGACAACGTTGGGCATTTGTTGTCTCGGATGTCATTTCCCGTGTTTTTGTtaaggtcaaaaaaaaaaaaaaaaagggaacgTTTTTGGACGGTGTTTTTAAGCATAGAATTTAAGCAAGAAATTCAAAGGC

Function

GO: NA

KEGG:

id description
K04345 PKA; protein kinase A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU192769 lncRNA upstream 29200 18764058 ~ 18765703 (+) True G142365
TU192759 lncRNA upstream 79107 18715579 ~ 18715796 (+) True G142360
TU192757 lncRNA upstream 82488 18709438 ~ 18712415 (+) True G142359
TU192758 lncRNA upstream 82488 18709438 ~ 18712415 (+) False G142359
TU192739 lncRNA upstream 103944 18615188 ~ 18690959 (+) True G142344
TU192777 lncRNA downstream 10731 18827128 ~ 18827985 (+) True G142372
TU192776 lncRNA downstream 11950 18828347 ~ 18831508 (+) True G142371
TU192782 lncRNA downstream 37003 18853400 ~ 18854020 (+) True G142377
TU192786 lncRNA downstream 37056 18853453 ~ 18854020 (+) False G142377
TU192787 lncRNA downstream 37056 18853453 ~ 18853996 (+) False G142377
XM_022678151.1 mRNA upstream 9545 18753807 ~ 18785358 (+) True LOC103034870
XM_022678131.1 mRNA upstream 1490812 17235199 ~ 17304091 (+) True LOC111194332
XM_022678132.1 mRNA upstream 1490813 17235199 ~ 17304090 (+) False LOC111194332
XM_022678134.1 mRNA upstream 1490814 17235199 ~ 17304089 (+) False LOC111194332
XM_022678133.1 mRNA upstream 1490814 17235199 ~ 17304089 (+) False LOC111194332
XM_007240018.2 mRNA downstream 5021 18821418 ~ 18826143 (+) True exosc4
XM_022677719.1 mRNA downstream 114482 18930879 ~ 18932145 (+) True LOC111188235
XM_022678160.1 mRNA downstream 153489 18969886 ~ 18987441 (+) True LOC103047721
XM_022678161.1 mRNA downstream 153489 18969886 ~ 18987227 (+) False LOC103047721
XM_022678164.1 mRNA downstream 278369 19094766 ~ 19119530 (+) True LOC103046799
TU192525 other upstream 1590410 17203222 ~ 17204493 (+) True G142166
TU192434 other upstream 1721419 17058294 ~ 17073484 (+) True G142093
TU192403 other upstream 1809608 16972202 ~ 16985295 (+) True G142067
TU192402 other upstream 1820973 16972202 ~ 16973930 (+) False G142067
XR_002651027.1 other upstream 1826953 16948382 ~ 16967950 (+) True LOC103022185
TU192788 other downstream 39839 18856236 ~ 18893509 (+) False G142378
TU192790 other downstream 39839 18856236 ~ 18858507 (+) True G142378
TU192797 other downstream 49053 18865450 ~ 18870317 (+) True G142384
TU193111 other downstream 919909 19736306 ~ 19868292 (+) True G142620
TU193252 other downstream 1400882 20217279 ~ 20220147 (+) False rnf138

Expression Profile