RNA id: XM_022677634.1


Basic Information

Item Value
RNA id XM_022677634.1
length 5691
RNA type mRNA
GC content 0.49
exon number 39
gene id LOC103040396
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 21880110 ~ 21938486 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCCCTGTCCACAGCGCAGCGTCCGCTCGCCCTCCGCTCCCTCGGATTTGTTGATCATACCGCCCCCGGACTCGGAGCTTTCAGGCAGCAGCTGTTCGGATAAGacattttaagacttcagAGTAAGAGGCCGTCTAGCAGAGGCTATAGGCACTGATCTAAGGAGACCAGCATGTCGGGATCAATGCCGTTCTACCAGAAGCACCACCGCCACTATGACCGTAACTATCGTAGCCGGGAGACAGAGTCTGCGGTCAGCCAGTACCAGCAGACGTCCAGCAGATACTCCGcccgcagcagcagctccacccAGGGCATCAGAGCCGCCACCTTCACTTCTTTGGATGAGGGGAGGCTGAGTCCTATGCCAAAGAGGTCCGAGCCCACCTACCTGGCCATGGATAAAGAAAACCAGATTATAGGCTATGTGGTGCCCATCTTCAGGGGCAGTAAGGAGTTTGCGAGTGGCCTGTCAGACACCGAAGACATGCGGGCTAAAGAGACCGCCGGCTATCTGGCCCGCAGAGACCTCTTTACTAGCGGGGTGGAGATGGAGCGCATGGAGCAAAAATCTCGCAGAACCGTCATGAGGGAGTCAGCAGAATGCATTTCCCTTACCAAGAGGATCCATGAAAACGAAGAGTACCACAAGCGTCTGAACGAAGATAGCCTGATGCATCCCCCGGAGTTTGTGATCAAGCCCCGCTCACACACTGTGTGGGAGAAACAGAGTGTGAGGCTGCACTGCACCGTCTCAGGATGGCCCGAGCCTCGAGTGGTGTGGTACAAGAACAATGTTAGCATTGACCCCATGTCAAACCCAGGGAAGTACAAGGTTGAGAGCAGCTACAGCGTCCACTCTCTGGAGATCAACAGATGTGACTTTGATGACACGGCCCAGTATCGTGTGTCAGCAATGAACAGCAAAGGGGAACTTTCTGCTATTGCTTCTGTCGTTGTCAAAAGATTCAAAGGTGAAGTGGAAGAGTCTCTGCCAGCTCCCAGACCCCAATGGAACAGGACTGTCTTCAAAGaccCCTGCCTTGAGTATGGCATTACTTTCGAGACACACATTGTGGAGAAGTTTGGAGTGTCATTTGGGAATGAGGGAGAGACTCTGAGCCTGGGCTGCTCTGTTATCATCTACCCTTCACTGCAGCGCTTCCAGCCTGAGATTGAGTGGTACAGAGATGACAAGTTGCTGGTGCCATCTAAGTGGGTTCAGGTGCACTGGAGTGGAGACAGAGCCacgctcacactcacacacctcaaCAAAGAGGACGAGGGTCTTTACACACTTCGCGTCATCACCAAGTCTGGCTATGAGACACACTCTGCCTATGTCTTCGTCAGAGattCTGATGCGGAGGTTGCAGGAGCTCCTGGTGCACCTCTTGATGTGTACTGTCAGGAAGCCAATAAAGACTATGTCATCGTTACTTGGAAACAGCCTGCTGTGGATGGAGGGAACTCCATTCTCGGCTACTTTGTGGACAGGTGTGAAGTTGGTACCACTCACTGGTCTCAGTGCAATGACACTCCAGTGAAGTTCGCCCGGTTCCCTGTCACTGGTCTGGTAGAGGGCCGCAGCTATGTTTTCCGTGTGCGcgctgtaaataaatgtggcATGAGTCATCCTTCTCGTGTGTCCGAACCCGCGGTTGCCATGGACCCTGCTGACCGTGCTCGTAAAGGAGCCTCTGCCCCATGGACTGGTCAGATCATTGTGACCGAAGAGGAGCCTGTCGAGGGTGTGGTTCCTGGCAAACCACGTGACTTGATGGTTACTGAGTCAACCAAGACCTATGTGGTGCTGAGCTGGAAGCCTCCAGGCGAGAAGGGACATGAGGGGGTCATGTACTATGTTGAGAAGTGTGTGTCTGGCACAGACAGCTGGCAGCGTGTGAACACCGAGATTCCGGTGAAGTCTCCACGCTTTGCACTCTTTGACTTGGCTGAGGGGAAGTCCTACTGTTTCCGTGTCCGATGCTGCAACTCTGCTGGTGTGGGTGAACCCTCAGATCCCACTGAGGCCACTGTAGTGGGAGACAAACTGGACATCCCATCAGCTCCAGGTCGTGTGATACCCACCCGTAACACAGACACTTCTGTAGTGGTGGCGTGGGAGGCGTCACGTGATGCTAAGGATCTGGTGGGCTACTACATTGAGAACAGTGTTGCCGGTAGCAATGTTTGGGAGCCCTGCAACAACAAACCTGTCAAGGCCACCAGGTTTATATGTCATGGCTTGACGACAGGTGAGAAGTATGTTTTCCGTGTAAGAGCAGTTAACGCTGCTGGAATCAGTGAGTTCTCACAGGAGTCTGAAGCCATTGAAGTTAAAGCTGCAATTGGGGGCGGTATTCCTCATGCCTCTCCTGCTCCACCTTTTGGCATCACTGTGCTGGAAAGCGTGCGGGACTCCATGGTGCTTGGCTGGAAGCAGCCTACTTTCATTGGTGGTGCCGACATCGTTGGGTACTTTGTGGATTACCGGGAGGTTATCGATGGAGTGCCTGGAAAATGGCATGAGGCTAACATCAAGGCAGTCAGTGACCGAGCATACAGGGTGTCAGAGCTAAAAGAGAATAGGCTGTATCAGTTCCAGGTCCGTGCTGCAAACATGGCTGGGGTGGGCATCCCGTCTTTGCCCAGTGCTACATTTAAATGTGAAGAGTGGACCATTGCTGTGCCAGGACCCCCACATGACCTCCAGGTGCTGGAGGTGCGTAAGGACTCTCTAGTGTTGCTCTGGAAAGCACCAGTGTACCAGGGGCGTGATGCGGTCAATGGCTATTATGTTGACATCAAAGAGGCTGATGCAGACTTCGAGACTTGGAGAGGGGTCAATGAGAAAGCCACAAGCAAGAAATacatgaagATTAGGGATCTGACAGATGGCGTTTCGTATGTTTTCCGTGTCCGTGCTCAGAACAAAGCCGGGGTGGGCAAAGCTTCTGAACCAACAGAGCCTGTGCTGGCTGAGACCAAACCAGGCACCAAGGAGCTGGTTGTAGAAGTTGATGATGATGGCGTGATTTCACTGAACTTTGAATGTGAAAACCTCAACGCTGAGTCTAAGTTTGTCTGGTCCAAAAACTATGAGGAAATCACAGACTCTGCACGCCTTACCATGGAGACCAAGGGCAACAAGTCCAAAGCCACCTTTAATGCTCCTTCTGAGGATGACCTGGGCATCTACTCCTGCATCATCACACATACTGATGGTGCCTCTGCTAGCTACAACCTGACTGAGGAGGGCCTGAAAGAGCTGTTGAAGGTCAGCCATGACCACAAATTCCCTATTATTCCACTTAAGTCTGAGCTGGCTGTTGAGCTGCTGGAGAAGGGTAGGGTTCGTTTTTGGCTGCAAGCTGAGAAGATATCTGCCAGTGGGAAAGTTGAATATGTCTTTAATGACAACATTATCAACCAAGGAGAGaAATATAAGATGAACTTCGATAAGAATACCGGCATCATTGAGATGTTCATGGAATCGCTGCAGAAAGAGGATGAAGGAACGTTTACTTTCCAGCTCCAGGATGGCAAAGCCACCAACCAGTCCAGCCTGGTGCTAATAGGAGATGTTTTCAAGCAGCTGCAGAAGGAATCTGAGTTCCAGAGGAAGGAATGGCACAGgaaacaaggtcCTCACTTTGTGGAGTATCTCAATTATGAAGTCACTTCTGAGTGCATTGTGAGACTGAAGTGCAAGGTTGGCAACATAAGGAAGGAAACAGTGGCACTGTGGTATAAGGATGGAAGAGAGATTAAAGCCAATGAGAAACTGGACTTCTCTGAGGGAGTGCTGTCCCTGGAGATCGCCCAGATCTCTAAGAAGGATGCAGGTGTGTATGAGGTGATCGTGAAGGATGACAGAGGAACAGATAAATCCACTCTCAACCTGACTGACCAAGGATTTAAGGATCTGATGAACCAAGTCTTCAGTGTTATTGCTaactcctccactcctctgAAGATCCAGAGCTCAGAACAGGGCATCCGCCTCTACACCTTCGTCAACTATTACAATGATGAACTGCACGTCACCTGGCATcacaaGGAGGCTGCTATTGCGTTTACTGATCGCATTACCAGTGGTGTGGTGGGAGAGCAGCTGTGGTTGCAGATTTCTGAACCCACTGAGAAAGACAAGGGCAAATACGCCATTGAGTTCTTCGACGGGAAAGGAGGACTGAAGAGAACAGTGGAGCTGTCTGGACAAGCATATGATGATGCGTTTGCAGAATTCCAAAGACTCAAAGCTGCAGCCATTGCAGAAAGAAACCGTGCTCGTGTGGCAGGAGGTCTGCCTGATGTGGTTACCATCCAGGAGGGCAAGGCTCTGAATCTCACATGTAATATCTCGGGTGACCCGGTGCCAGAAGTGACCTGGCtgaagaacgagagagagatggtgtcGGACGATCATTACATCCTAAAGTTTGAGTCTGGAAAGTTTGCCAGCTTCACCATCACCACCGTCAACACCAACGACTCAGGCAAATACAGCATCCTGGTCAAAAACAAGTACGGCACGGAGAGCGGAGACTTCACCGTAAGTGTCTTCATCCCTGACGAGGAGCACGGCAAGAGAAAGTAGAAAAAGATGAATGGAATCAgggtcaccaaaaaaaaaaaaagaattaaatatgtataaaggTTAAAACTAACAGAAATGTGCCATCTAAGAAAGTTAGCTGACTGTAGTGTTGGTTATCTGTTATTGAGGATATTGATATTTTACAAAACAATAACCCTCCATTAAATTAGGATTGTTAGATATATGAGTATTTTCACTTTGGGGAAGGAGAGAAGTTACAGAATGGCAGCATGGTGCTAAAAAGATGTTAAAAGAAGTAGATGAGGGTAAGATTTTGGTTTTGGTCCAATCTTTCATCATAGCACTACAGTAGTACCCCAGAATCACCAGTTAAGAAACTGACTGTTATTTGTAAACATTAGTGTAGTAATAGGGTAGAGTTCACTAAATATAATACACAAGGGAAGAGATTTCCAATCTAATGCTGACATTggtcaaatgttttcagtcttcACTTTGGTTCTGTTTCACCTCCAAACGTACCTGAGCCAGGTAATCAGCACTATACAGCTGAATTACCACAAATCAGAACACAAATGTGGACTAAATTAGCGCTAATTCATCCTAGCAAACCCTTCCTGGTGGCATTACCCaatttatttctcaattttaGTCAGTTGTGCTTTTAATGGTGTCTGTTATATTGTGTGGTCCATCTCAGGACCAGGGCAGCACTTTAGTTTTAGAATTtgattgtattgtttttgtgcgtgtgtgtgcgtgttgtaGCTGCAATTGAGAAAGATCTGACGCACCGAATCGTGCATGAATCCTTTAAAGCCTTGATTTGAGGGAAAAACAGGTGCTCTGAATCTCTGGATTCACTCAGATGTTGTGTTTATAGTTAGAGATGTCTGAAGATGCTTTTGTcttgtcattaattattaataatgacaTCACGTCCTCTCACGTGATGCGAATCCCTGCACCTCCTTCACATTGTTTTAAGTTATAGCACTGTAGCACTTCACTGTAGCAGTTATGACATCACTTATCACTGCATTGAGGTGTTTGGCACCACTTCTGTGTCACTGCGATGACATCACTGTGTTTGTcccgttttaaataaatagagcaCGTATTCCCTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU193812 lncRNA upstream 164935 21711366 ~ 21715175 (+) True G143172
TU193757 lncRNA upstream 178165 21700822 ~ 21701945 (+) True G143127
XR_002650971.1 lncRNA upstream 221490 21655779 ~ 21658620 (+) True LOC111194179
TU193732 lncRNA upstream 237252 21634242 ~ 21642858 (+) True G143114
TU193730 lncRNA upstream 297444 21581424 ~ 21582666 (+) True G143112
TU193956 lncRNA downstream 452665 22385337 ~ 22385673 (+) True G143282
TU193958 lncRNA downstream 545994 22478666 ~ 22483491 (+) False G143283
TU193957 lncRNA downstream 546064 22478736 ~ 22483491 (+) False G143283
TU193969 lncRNA downstream 546064 22478736 ~ 22566331 (+) True G143283
TU194044 lncRNA downstream 637352 22570024 ~ 22576268 (+) True G143334
XM_007243414.3 mRNA upstream 23567 21850265 ~ 21856543 (+) True chmp5
XM_007240031.3 mRNA upstream 40772 21819528 ~ 21839338 (+) True LOC103039256
XM_022677724.1 mRNA upstream 132625 21740241 ~ 21747485 (+) True LOC111194247
XM_007231078.2 mRNA upstream 155985 21718321 ~ 21724125 (+) True lypla1
XM_007231074.3 mRNA upstream 247537 21626319 ~ 21632573 (+) True LOC103047292
XM_022677658.1 mRNA downstream 25348 21958020 ~ 22107652 (+) True malrd1
XM_007230313.3 mRNA downstream 190234 22122906 ~ 22356385 (+) True LOC103046886
XM_007230314.3 mRNA downstream 427965 22360637 ~ 22392511 (+) True nfx1
XM_022677640.1 mRNA downstream 437971 22370643 ~ 22388351 (+) False nfx1
XM_015606813.2 mRNA downstream 465457 22398129 ~ 22477982 (+) True smarcd3
TU193826 other upstream 5724 21870676 ~ 21874386 (+) True G143182
TU193751 other upstream 233405 21645905 ~ 21646705 (+) True G143122
TU193733 other upstream 278745 21598682 ~ 21601365 (+) False LOC103047556
TU193349 other upstream 1089988 20782583 ~ 20790122 (+) True G142820
TU193252 other upstream 1659963 20217279 ~ 20220147 (+) False rnf138
TU194024 other downstream 603013 22535685 ~ 22610447 (+) False G143324
TU194021 other downstream 659113 22591785 ~ 22610447 (+) True G143324
trnat-cgu other downstream 1132356 23065028 ~ 23065099 (+) True trnat-cgu
trnaa-cgc_2 other downstream 1132615 23065287 ~ 23065358 (+) True trnaa-cgc_2
XR_002650977.1 other downstream 1452110 23384782 ~ 23394167 (+) True LOC111194185

Expression Profile