RNA id: XM_007240883.3


Basic Information

Item Value
RNA id XM_007240883.3
length 3998
RNA type mRNA
GC content 0.48
exon number 11
gene id ripk1
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 20088296 ~ 20115213 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GGTTTTGGTACTGGTGCTggttgttgagtgtgtgttagtaagTGTTTTGTGAAGGTTTGGTTGTGTCAAAGGTGTTAGGATATTACTATTAAGTTGATTACGAAGGTGTTTGGTTTGTGTTAGTAGGTGTTTGGTGGAGGTTTGATTGTGTCAAGAAGTGTTCAGATATTGttcatgtttgtgttttgtgttttgaagGTTTGTTCAGTGTCAGAAGTGTAAGGACATTCTTAAAGTTGGTTCAGATGGTTTTGGTGTTGAATTTAGGTGTTTGATAGAGGTTTTGGCAGTGTCAAAAGTTTTAGGACATTTCTAAAGTCGATTCAGTTCAAgttttgctgttgtgtttaggtGTTGGAGGATGTGTTAGTTGGTGTTAGGTGGAGTTGTTTGCAGTGTCAGAAGTCTTAGGACATAGCTAAAATTGGTTCAGTAGGTGTTACGTGTTGGTTTTAGGCATTAGGCTGTGGTAATAAGTGTTTGGTGGAAGTAAGGTCTTGTCAGAAATGTTAGGACTGAATGTCTGAAGTTGGTTCCGAAGGTGTTTGTGTTGGTTAAAGAGTCCTTAGTTGTTGTGGCTTGTGTTAGTAGGTGTTTTGTGGAGGCTTGGTCGTGTGATACTGGTCCTGGTTGTTGGATATGTGTTAGTCGGTGTTTGGTGGAGGTATTGATTGTGTCAGAAGTGTTAGTATATTACTAAAGTTGGTTTAGAAGGCGTTTGGTTTATACTGTTGGTGTTTTGTGGAGGTTTGTCTGTGTCAGAAGTGTTAGTATATTACTAAAGTTGGTTTAGAAGGCTTTTGGTGGAGATTTGTTTGTGTCGGAAGTGTTAGGACACTCCTAAAGTTGGTTTAGAGGGTctttgtgctgtgtgtgttagcagtgtAAATCACTTCCTCAGTGGTGTCAGGTTACACAACTCCTCAGCCACAGCATGGCTACAGGATCGAGCTTGGACATTTACATGAAGTCCTCGGACTTGATCAGGAAGAAGCGGCTGGACTATGGAGGCTTTGGAGAGGTTTACCTGTGCTACCACAAAACCCTGGGCCAGGTGGTGCTGAAGACCGTGTACACGGGACCACCTCGAAATGAGCAGAAGCCGTCTCTGCTGGAAGAGGGCAGTCTGATGAGCCGGCTGAACCACGAGCGCGTGGTGAAGCTGCTGGGGGTGATTCTGGAGGATGGAGATTACTCTCTGGTGATGGAGCTGATTCCTCGAGGCAATCTGCTGGCCATGCTGGAGAGGGTCAGTGTTCCCATATCCATCAAAGGAAGGATCATTCTGGAGATCTTGGAGGGAATGGTTTATCTAACCAACAACCAAGTCATTCACAAGGATCTGAAGCCGGAGAACATCTTAGTGGACGAGCATTTCCACGTGAAGattgcAGATCTTGGTCTGGCCACTCATCAGACGTGGAGTAAGCTGACCCGGGACGAGTCCCGCAGACAGAGCCGGCTGGGTGTGAACAGGAAGTCGTCGGTGCGAGCAGCCGGGACGCTGTGCTACATGGCTCCCGAACACCTGGAGAGCGTTCACACTCGCTCTAGTGAAAAATCCGACGTCTACAGCTTCGCCATCGTCGTCTGGGTCGTCCTCACCAGCCAGGAACCGTACGAGAatgcAAGAAGTGAAGATCAGATCTGTCAGTGTGTGCGTCAGGGAGACCGCCCCGATGAGCAGCTCATTCCAGATGATGCACCGCCAGAGATCACCCGCCTCATGAAAGCCTGCTGGGACCAGGACCCTCAGAAACGACCCACCTTTAAAGaAAGCTATAATTCATTCTTGCCAGTCTACAGGGAGAAGCTGGAGACGGATGTGGAGAAGGATCTGCATGGTCTAATGGATTTATATGAAGGACCTTCAGATCTGGTAGAGAAGATGAAGGCCCTGTCAACGGAGCTGCCGCCGGCTAATGCAGGACTGGAGCCCCCATCCTATCCGCAGAGCACCAGAGACTCTCCCACCCCCCTGCGGAGTTCAGATCTGGGGCCGGTGGAGGCCAGCATCGAGGACCTCAGCCTGTTTTCAGCAGAGAGCCTTCAGGTGGACGCAGCTCCGTGCAGCCCGCCCAACCTGGACCAGAAACTAGCCCAGGAGTTCAACTACCACAAGTGGGGCAGCTACACCCGAACGGAGCCGCCCGACCTCAGCCCCTACAGCTACTCCACTCAGTCCTCGCAGGCCGTGGCCAATCACAGGCAGGCTGGAGATCTTCCCCAGCAGGTGTCCTCGGTCCAGTCTTGGACCAAACCCAGCCCTCAGCCGAGCGCTCCGGAGGAAGCCTGGATGCAGCCGTCAGTTCCAGGTCCTTTTGAGGGTCAGCACAGACCTCATTACGAGAATCAGATGTCCGGCCCGTATCCACATCATTACGACCCCTACCAGCGCCAGCACCCGCAGTTCAACCGCCTGCAGTCCTGGCCCGGGGTGGCACCGCACCCGATGTCCGAATCTACCCCTAAGGAATCATGCGCTGGTCTGCGTGTTAGCTCACCTGTAATAAGCCCACAGCCAGAAACAGGGCCATCACTGTACATCACTCAAGCCAGCGGGATCCAAATCGGGAACAACAACATGATGAACTTCCGTAATCCTGAAAGCTCTCTCAACTCCATGGCCAGTTCATCCCCCGTCAACAAGTGTAAAGAGCTGCTGCAGAAGTATGAGGACCACACTGTCACTAAGGATCAACTGGATCTGGTTCAGGAGAACGTGGGTTTGAAGTGGAAGGCCTGTGCCAGGAGACTGGACCTGACGCAGATGGAGATTGACGAAATCGAGCACGATTACGACCGCGACGGCCTGAGCGAGAAGGTCCATCAGATGCTGGAGCGCTGGAAGATGAAGGAGGGGTTTAGCGGCTGCACCGTGGGGAAACTGTGCCGAGCCCTGGAGAAATGTGGCAAAGGTGACGTGATCCTTAAGTTGCTGCTCAAATCTCAGGATAACACCGTTCTTTAAAACTCTACCAGCAGGAAATGTGGTTCATTAGTGCCTTAGGATGGAGATGTGGTcattagttgttgttttttttttttaagaaatatcggGGGTCTTTTGTTTCTGGCTTGTGTTGATCTGTTTTATGTACACTTATTACACAGATGTCCTACTCATTTGGTAAGACCCTTGTCTAAGACCaagccttcattgagtttaaaCATGGCGTAAAAAAGGACCAGAAGCAAAGAAGAAGAATCAGTTCGTCTAGTAAATCCATGTATTTTAATACCAAAGCTTTTACATTGCCATCAAATCACAGTACCGGGGACTTccagtggtccagcagactaagtgcttcagcatcagcagccggagtccgagagagccaAATTGGCCATGCTTCCTTTGAATGGTAGATGGTAGATGGTCCTCTCTTCTCATATAATTTCTTTAATAATGTTGATCAGATCAGAACTGGGATGCTGCACGTTCCTCCAAGCCACTGTTGGCTACCCAATGATGCGgatggaaaagaggcggagtctctGAGACTTCACAATGTATCACAATGTAGGAGGTGTGCGCTGGTGCTCTTTTCCCTTCTAGTGTTGGggtcattactagtgatggggggagttcATATGAATATGGATTGGGTATTAGTTTTTCCTGTACAGCACATCTAACTACACCTTTACACCTAACATTAGCTGGCTGGCTAACAGCTAACTAGATCACATTGGCTATATTATGCTAGCATCAGacttaccaaaaaaaaactgtgatcaaCACAACTTTTAGTTGACTGACGATTTAACTGTGactcagctactccatgtaataATACAGACAACTGGTCTGTTCCAGTCAATGCTGTCAATCACTCCATTCTTAAGTGTAGCTCCGCCTTCTTCCAGTAAAGCAGAATAAGGTTTCTAgcggaaaaaaatatatacagctctggaaacaattaagagaccacttcagtttctgaatcagtttctcatattttgctatttataggtacatgttttactaaaaatga

Function

GO:

id name namespace
GO:0009987 cellular process biological_process
GO:0005515 protein binding molecular_function
GO:0004672 protein kinase activity molecular_function

KEGG:

id description
K02861 RIPK1, RIP1; receptor-interacting serine/threonine-protein kinase 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU193107 lncRNA upstream 363689 19724445 ~ 19728971 (+) True G142619
TU193109 lncRNA upstream 363689 19724445 ~ 19728971 (+) False G142619
TU193102 lncRNA upstream 396377 19693936 ~ 19696283 (+) True G142614
TU193091 lncRNA upstream 570772 19521677 ~ 19521888 (+) True G142603
TU192890 lncRNA upstream 659603 19432674 ~ 19433057 (+) True G142458
TU193098 lncRNA downstream 1544 20116757 ~ 20117450 (+) True G142610
TU193232 lncRNA downstream 22913 20138126 ~ 20140399 (+) True G142726
TU193278 lncRNA downstream 283540 20398753 ~ 20414640 (+) True G142765
TU193282 lncRNA downstream 294410 20409623 ~ 20434382 (+) True G142769
TU193284 lncRNA downstream 308209 20423422 ~ 20499753 (+) True G142771
XM_022678166.1 mRNA upstream 661486 19425994 ~ 19431174 (+) True LOC111194335
XM_022678167.1 mRNA upstream 661486 19428842 ~ 19431174 (+) False LOC111194335
XM_022678164.1 mRNA upstream 973130 19094766 ~ 19119530 (+) True LOC103046799
XM_022678165.1 mRNA upstream 973130 19094766 ~ 19119530 (+) False LOC103046799
XM_022678161.1 mRNA upstream 1105433 18969886 ~ 18987227 (+) False LOC103047721
XM_022678173.1 mRNA downstream 87435 20202648 ~ 20220149 (+) True rnf138
XM_022678174.1 mRNA downstream 108563 20223776 ~ 20245141 (+) True mep1b
XM_022678180.1 mRNA downstream 441553 20556766 ~ 20574038 (+) True LOC111194338
XM_022678179.1 mRNA downstream 496282 20611495 ~ 20667477 (+) True LOC111194337
XM_022678176.1 mRNA downstream 600331 20715544 ~ 20774155 (+) True LOC103044091
TU193111 other upstream 224368 19736306 ~ 19868292 (+) True G142620
TU192788 other upstream 1199151 18856236 ~ 18893509 (+) False G142378
TU192797 other upstream 1222343 18865450 ~ 18870317 (+) True G142384
TU192790 other upstream 1234153 18856236 ~ 18858507 (+) True G142378
TU192525 other upstream 2888167 17203222 ~ 17204493 (+) True G142166
TU193252 other downstream 102066 20217279 ~ 20220147 (+) False rnf138
TU193349 other downstream 667370 20782583 ~ 20790122 (+) True G142820
TU193733 other downstream 1483469 21598682 ~ 21601365 (+) False LOC103047556
TU193751 other downstream 1530692 21645905 ~ 21646705 (+) True G143122
TU193826 other downstream 1755463 21870676 ~ 21874386 (+) True G143182

Expression Profile