RNA id: XM_007241988.3


Basic Information

Item Value
RNA id XM_007241988.3
length 3194
RNA type mRNA
GC content 0.46
exon number 12
gene id bcl6b
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 36744196 ~ 36752978 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCCAGTTGTAAAAATCATCCTCTAAGAAGCAGCGCACagaacagtgtgtgtttgtggtgggTTTACCTGGAGCAGAGAGGAGTCGCAAAAACAAGGTGGTGTGTGTTCTCGTCCCTGCTGGTCGGGGTACGAGTAGGGAGCTGGTCTCCCCAAGCATTTTTCTCATCTTATCTCTTCAAATAAGACCAATAATTCAAGATGATGAGTAAAATGCAGGTGACTGAGGGATGTGGTGCTGTGTCGAGGCGTGAGCAGGTGGCGGAGGTGCAGGGATATGTGAAGGAGTTCACTCGACACTCCAACGACGTGCTGCTGAACCTAAACGAGCTGCGGCATCGAGACATCCTGACTGATGCCACGCTACTGGTGGGCAGTGCCCGTCTACGCGCCCACTGCGCAGTGCTGATAGCGTGCAGtgGCTTCTTCTACTCCCTGTTCTCCCGCCACACAGCTGGTGCTGTTAGCGAGCGGGGGGTTTCCCTGTCCCTGCCGGAGGGTCTGGAGGCGGGTAGTGTGTCACTGCTGCTGGACTTCATGTACACCTCCCGCCTTCCCCTGACCCCCAGCACGGTGCACGGGGTGCTTACTGCTGCCACCTACCTGCAGATGGAACATGTGGCAGACACCTGCAGAGCATTCCTACAGAACAGtgaagGGATGTGTGCGAGCCCTCCTCTGGTGGAGCTGGCCTCCAGAAGCCCCTATCTGAGCTCCACAGTGACCCTAGGTGGCAGATCTCCTCCAGCTCATCCATCTTTCACCTCCTCCCCTTCCAGACCTGCTGCAGAGGCAGAGGAGCCTAGCCCTGCCAAAGCCAGGGTTCCTGAAGAGACAATGTCCTCACTGAAGACTATTCCCAGGCCTCAGACTCTGAAAGTGGAAAAATCTTCATCCTTCTCTCCCACCACTCCATCTCCACACAGTCCAGCCCAGTCCAGTGGCCAACCCAATTCACCAGCTGAGTCCAGTGGCTGCAGTATCTCCCCTAAACTGAAGCTGCGCTCTGAATCCAGACTAACTCCTGATCCTAAGGCCTGTAACTGGAAGAAGTATAAATACATTGTCCTCAACCCTCTCTGTGCTACACCCATTAAAGAGGAGGAGTCAGTAGAGGAGCAGAAAACATTTGACAACTCCCCCACAGACACCATTGCCAAAGCAACAGAAAAGATGAATGAGGGACACAGCCTGTCTCCTGTCTATGATGTACCCCAGCCACAGACTGACTTTACCCCCCGCCATGTTCTTTCACCACACACAGCGGAGACCTACAGGGGACCACTTGTAACTGTTTCCCAGGATAACAATGGCTTCTGCTCTCTGTATCAGCACGCTTGTCCTCCTGTGCTAGAAGCTGCCAAACAGAACCCTTCGTTTGGGAAGCTTCAGATCAAGCTCGAGAGCCACTCCCCTGTGATCTGTTACTCAGGGAACCAAGGCAGCACTAAGCCTGCCTGCTCAGataAGCCATATCGCTGTAATGTGTGTGGGGCACATTTTAACCGCCCGGCCAATCTGAAGACCCATTCCCGCATTCACTCAGGAGAGAAGCCCTATCGCTGTGACACCTGTGGTGCTCGATTTGTCCAGgttgCTCATCTGCGTGCTCATGTTCTGATTCACACTGGGGAAAAGCCGTACCCGTGCCACACCTGCGGAACACGCTTTCGCCACCTGCAGACATTGAAGAGCCACCTGCGTATTCACACAGGGGAGAAACCATACAGTTGTGAGAAGTGTGATCTGCGCTTCCGTCATAAGAGCCAACTAAGACTTCATCTGAGACAGAAGCATGGAGCCGTCACCAACACCAAGATCCGCTATAAGGTTCTGACTGACCCATACCAGACCAGACCAGCTATACTGCAGACCTGCTGAagaacccacacacacacacacatctgttttACACAGCAACTTGTCCAGTGCAGTTTTTAGTGGGGGAGCCTTCCTGTCTTCTTCTTGCAATCAGGCCAAACTCTCTTTCAAAGTGTTAGacatgattaaatatataagtatctGAGAATGTCGAAAAGGGTTCTGTAGAGATGATCATGAAGAGAAGGGCATGAAAAGTGTTATTATAAGTAAAGGGGCTTTAAGTCTATTTAATATAAAGAGGTGGAGTGCAGCATTCCTGGAAAGCacatattaaaacacacacaagccttCAAGAAATGCTGTTCTCCTGCACTAGACGTGCTGACTATAACTTTTAATGCTTGTCAcactttatgctttattatttatttgagcaGCTAAgtgttctctttctttcaaTTCTTAATAATGATGTATGTGGGAAAAGGCAGAAAAGAGCAAAGGAaattcagttatttttaaagaaagaagTGGCAAGGTACCTGGAGATGTCATATAGATGAACCATGAGAATAAGTTTATTTAAATCTAATTAGTACTtgctaaatgaaaatgaaagtatAGTAGATGGTATGTGCAGAGGTGTGTTAGGAGCTCAGATGGTGAATGAGGAATGATGTGAAGAAGTTGGTATATTTAAGTGGGGAAGtgattttacataaaataggAGAGATCATGGCCCGAAAATAGATGGAATAGTAAAGTGTAATGAAGgaatatgtatgttttttgaAAAGGAACAGTACAGCAAGTTAATACTGAATTCTTATACTGCTTAATTTGTCAGTGAAGTTTAGCAATGCAAATGCCttgcgaaaaaaaaaatgtaaaagtgagTCATAAGCCTGAATCAATGAGTAAGAGCTTTTGCTTGTTTGTCTGTATGTCAATAGGTCAATGTCTGTCATGTTCCCATACTCACTGTGTGTTAAATTGACAGATCaaacatattatattttagaaaCTTAAGCACTAACACATTTTTTGCTCTACTAACTTAAAAGGCCTGGAGCCGGTTTACTTTGAATGAGTAATCCAACTCAATATGTCTTTAGGAGTAGCTTCTCCAAGTATCCTCTATTTTGTATTAATGGTATTTTTGATTGAGCGGAAAAGTATATTTTGTGGGTGGTTTTATTGATAGTCTAGGAGTCCAAGCAGGCCGAGGACTCAAACGAGCCAGACTGAGAGTAAAAGTTGATGATGAAGATAAAGATTTTGTTGACATTGTCAAATGTAACGTTCTTTTGCTGGACAAAGACAAGacctattttatataaattaaaattaaattaatttcttttctttaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU198836 lncRNA downstream 24249 36718594 ~ 36719947 (-) False G146927
TU198835 lncRNA downstream 24309 36718557 ~ 36719887 (-) True G146927
TU198834 lncRNA downstream 24309 36718594 ~ 36719887 (-) False G146927
TU198822 lncRNA downstream 37915 36666200 ~ 36706281 (-) False LOC103043480
TU198827 lncRNA downstream 80022 36663482 ~ 36664174 (-) True G146922
XR_454043.3 lncRNA upstream 47023 36800001 ~ 36813698 (-) True LOC103040824
TU198850 lncRNA upstream 47035 36800013 ~ 36813692 (-) False LOC103040824
TU198998 lncRNA upstream 323351 37076329 ~ 37139272 (-) True G147046
TU198992 lncRNA upstream 428798 37181776 ~ 37246025 (-) False poln
TU199036 lncRNA upstream 481846 37234824 ~ 37235910 (-) True G147079
XM_007241993.3 mRNA downstream 3117 36724973 ~ 36741079 (-) False slc16a13
XM_007241992.3 mRNA downstream 3117 36724973 ~ 36741079 (-) True slc16a13
XM_007241998.3 mRNA downstream 57643 36666199 ~ 36686553 (-) False LOC103043480
XM_007241997.3 mRNA downstream 57643 36666199 ~ 36686553 (-) True LOC103043480
XM_007241996.3 mRNA downstream 84599 36586963 ~ 36659597 (-) True LOC103042975
XM_007243284.2 mRNA upstream 33601 36786579 ~ 36788965 (-) True LOC103044717
XM_022678470.1 mRNA upstream 73385 36826363 ~ 36833257 (-) True tm4sf5
XM_007233792.3 mRNA upstream 208601 36961579 ~ 36974436 (-) True LOC103036692
XM_022678472.1 mRNA upstream 208601 36961579 ~ 36969936 (-) False LOC103036692
XM_007233791.3 mRNA upstream 221557 36974535 ~ 37005758 (-) True LOC103036398
TU198491 other downstream 859875 35883609 ~ 35884321 (-) True G146686
TU198348 other downstream 1265002 35463197 ~ 35479194 (-) True G146584
TU198346 other downstream 1312276 35422965 ~ 35431920 (-) False hspa12b
XR_001518498.2 other downstream 2958775 33785095 ~ 33785421 (-) True LOC107197333
TU197806 other downstream 3638609 33100297 ~ 33105587 (-) True G146175
XR_002651059.1 other upstream 374437 37127415 ~ 37192500 (-) False poln
TU199053 other upstream 599100 37352078 ~ 37391735 (-) True G147092
TU199299 other upstream 755683 37508661 ~ 37514452 (-) True G147302
TU199360 other upstream 970414 37723392 ~ 37726759 (-) False mrpl52
TU199421 other upstream 1152787 37905765 ~ 37910873 (-) False LOC103047699

Expression Profile