RNA id: XM_007242005.3


Basic Information

Item Value
RNA id XM_007242005.3
length 3720
RNA type mRNA
GC content 0.45
exon number 20
gene id acadvl
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 36461808 ~ 36498452 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TACTTATCTTAAAGCTTGGCAGTGAGGCTGAATCGGTTCAGTTGGTCTGGTTCGGCTGTTTTTTACCCACTAGTGCTCTTCAAGTATCGGGTCCTTCAAGGACAACAACAAGAAAACTGCTGCTGGAGAAGCTTCCTCAGGACGGAGAGCCACCTACTTAATCTTAGTTATTAGCTAGCtgcatttttaaacagttaaagtTGGTTTCAAAATAAGCAATTAGGCACATTAGCTCTGAACAACACAGCTAGCGAATCAGCTGATCTCATATCCAGCCACTTTAACCCATTTTCCTTTTCACCCAGACAAGCTAAACCTAGCTAAGCTAATCATGCTGCTGCGGAAAGTCTCCCAGAGTCCGGCGCTGTGTGGCGCAGTCCTCCGCCTGCCCCAGTTCGTGCCCGGAACATCGCGTCAAGCAGGAGTTGTAGCTGTGCAGAATGTACGACTCTACGTTAGCCAGACAGCCGAGGCTGTTATTGACAAACATGAGGTGGGCACTGGTGCTGCTACCAAGGCTGGAAAGGCAGACAAGGCGGCTGCTAGTGTGGAGTCCCAGTCCTTTGCAGTAAACATGTTTAAGGGGCAGATCAGCACCACGCAAGTCTTCCCCTTCCCCTCAGTGTTGAATGAGGACCAGTCTACTTTTCTTAGGGAGCTGGTGGGACCGGTTTCCAAATTCTTTGAAGAGGTCAATGATCCTGCTAAGAATGATACTCTGGAGAAGGTGGAGGACCACACCTTGGAGGGGCTGAAGGAGCTGGGGGCCTTTGGTCTGCAGGTTTCTACTGAGCTGGGCGGCGTTGGTCTGAACAACACACAGTATGCCAGGCTGGTGGAGATTGTGGGAATGCATGACCTGGGTGTGGGGATCACTCTCGGTGCTCACCAGTCCATTGGCTTTAAGGGCATTCTCCTCTTTGGCAACAAacagcagaaagagaaatacCTGCCCAAGCTCGCCTCAGGTGAAACAGTAGCAGCTTTCTGTCTGACTGAGCCGGCTAGTGGCTCAGACGCAGCATCTATCAGAACCACAGCAGTGCCATCCTCCTGTGGAAAGTACTACACCATGAATGGAAGCAAAATTTGGATCAGTAACGCAGGCCTGGCTGAGATCTTCACTGTGTTTGCTAAGACTCCAGTGAAAGATGAGAAAACCGGAGAAGTGAAGGACAAGATCACAGCTTTCATTGTTGAGAGGAGCTTTGGTGGAGTCACACACGGCCCTCCTGAGAAGAAGATGGGTATTAAGGCCTCAAACACTGCAGAACTGTATTTTGAGAATGTGCGGGTGCCAGCTGAAAATGTCCTCGGGGAGGTCGGAGGCGGATTTAAGGTGGCCATGAATATTCTCAACAACGGACGCTTTGGCATGGCTGCAGCGCTCTCAGGAACCATGAAGGGAGTCATCGCTAAAGCGGTTGATCACGCTGCCAACAGGACCCAGTTTGGCAACAAGATTCACAACTATGGAGTCATTCAGGAGAAGATGGCCAGAATGGCCATGTTGCAGTATGTTACAGAGTCCATGGCCTATATGGTGAGCGGTAATATGGACAGTGGAGCAACAGATTTCCAGATTGAGGCAGCCATCAGTAAAATCTTTGCTTCTGAAGCCGCATGGTTGGTGACGGATGAGTGCATACAGATTATGGGCGGAATGGGCTTTATGAAGGATGCCGGGGTTGAGAGAGTCCTGCGAGATCTGAGAATCTTCCGTATCTTTGAGGGCACCAACGACATCCTGCGACTCTTTGTGGCTCTTAACGGCTTCCAGAATGCAGGCAACCAGCTGAAGAGTCTACAGAAAGCTCTGAAGAATCCACTGGGCAATGCTGGCCTGCTGGCTGGGGAAATCACCAAACGGGCCAAGAGGAAGGCAGGCCTGAGCACAGGCCTCTCTTTGCAGGGATCCATTCACCCTGAGCTTGCTCATAGTGGAGACCTGACAGTTAAAGCTATTGAACAGTTTGGAATCGTAATTGAGGAACTGCTTCTAAAGCATGGCAAGAAAATCATTGatgAGCAGTTTGTGCTACACAGAGTGGCTGACTGTGCCATTGATTTGTATGCTATGGTTGTTGTTCTGTCCAGGGCCTCCAGATCTCTGAGTCAGGGTCATTCCTCAGCTCAGCATGAGAAAATGCTCTGTGAAACTTGGTGCATAGAGGCTCATGACAGAATCATGCGGGACATCAAGTTCCTGAAGTCAGGCTCCTCCAAACAGATCTTCAAGAACCTGCGCGCCATCTCCTCAGCTGTGGTGGAGAATGGAACAGTGGTGGCCCCTCATCCTCTGGGCATGTAAAGACTAAACTATCCGCTCCCTCTCAGATGTTAGTCTATTCCATCCTCGAATATAATAATGTTCTTTTAGACCGCTCCGACCATCCATATTTCCTATGAATTTCCAGACTGATCCGTGCTGCCGTAATGAGTAAGTGGAAGGAGGAGTAACTCCACAGGAAGTGCATTAATGTTTCAGAAGTCAGGTTAATAGATTCGGTTGTACAGTTAATGTCCGTTTTTTTGAAATGTCGGTAGTTGGAGTTAAATAATAGGTttgatgaggaaaaaaaaagtctcagaGCGAGGTACTATAGAATATCATTAATGTAAATGTCTTCTGTGGGTAGTTTTGGGGTCTCTTAACTGATGGGTAGTTTTGCTACTGActtttattctattgtttttgtgttgtacagttaatacacactcacacagtgataactttcttttctttgcaagAGTAAAGTGTAGCAATAAGCTAAGAACTCCTAACTGAAATTGCCCCTTTATCCATCCTATTCTGATACAGGATTTTCCAATCATCATTGTATCAGATGTGTTTTAACCACAATGTCATTGTATtattttgcaatgttttttaatttctagTATATATACTATCCAATATAGCCTTATAGAGACCAAAATACAGAGATTAGTTGTCTTAGTATTCTGTAGCAAACTGAGTGAGAAAGTTAACTTGGTTCTAGATTCACTTTGATGCCTCCTCTTTTACGGATATTGGAGTTATTGTACCACAAAAAACACCATAGTGTACAAAATGGTTCCCAACACAACAGGAAACGTTTGGGTGTTTTTATCGTAGGCTCGACAGGAAATGTCGGATACCCTCAGCTGCCATACATACAAATACCAAAGTGCAAATGCTCATAGTTGAAAGTGCTCTGCACTTTGACTTCCTTCAAGACACTCTGAATTCAGTTATCAGTTATGCAGGTGCAGGAACACTTAACAAAGACATacgatttttatttttttttggtagatTTACTGAGTAtgcatgtttcttttttgttccaGTCCTCGTTTAAACAAGCCTGTAAGCGCTCACATCATGGGTAGATCAGTCAAGTGTCTGTCAGAAATAAGCTTCTGTGCCATAGCCTCTAGACACGCTCTTCGTGCTCAGCTTTACACTCTTCTATCTTCTGTCACCGAGAACTATATTTATTACGTGTTAATAAATCAGTAGTAGATATCGTTGGCCAGTGCCTGAATGTACAGAATGCTGTTAAATCTGGAGAAGGTTCCATGATTTAAGGACATTTTACAGGGAATCTTGAGGTGCACAAACCTCGACCGTGTAAAGAAATGAAAGGACTGTTCTATAGGATCTGTTTGACTGTGTACCAGAGTCTGTCTCATCAATgcaagtaaataaactaaaattactgaatGTTACTAAAA

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0050660 flavin adenine dinucleotide binding molecular_function
GO:0003995 acyl-CoA dehydrogenase activity molecular_function

KEGG:

id description
K09479 ACADVL; very long chain acyl-CoA dehydrogenase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU198785 lncRNA downstream 17757 36440755 ~ 36444051 (-) True G146892
TU198787 lncRNA downstream 17757 36442806 ~ 36444051 (-) False G146892
TU198788 lncRNA downstream 18093 36441685 ~ 36443715 (-) False G146892
TU198786 lncRNA downstream 18499 36442635 ~ 36443309 (-) False G146892
TU198765 lncRNA downstream 143601 36316664 ~ 36318207 (-) True G146875
TU198827 lncRNA upstream 165287 36663482 ~ 36664174 (-) True G146922
TU198822 lncRNA upstream 168005 36666200 ~ 36706281 (-) False LOC103043480
TU198835 lncRNA upstream 220362 36718557 ~ 36719887 (-) True G146927
TU198834 lncRNA upstream 220399 36718594 ~ 36719887 (-) False G146927
TU198836 lncRNA upstream 220399 36718594 ~ 36719947 (-) False G146927
XM_007242006.3 mRNA downstream 16141 36430924 ~ 36445667 (-) True LOC103046032
XM_007242007.3 mRNA downstream 47718 36390105 ~ 36414090 (-) True LOC103046336
XM_007242013.3 mRNA downstream 123144 36298639 ~ 36338664 (-) False hdac8
XM_022678464.1 mRNA upstream 2196 36500391 ~ 36521635 (-) True dvl2
XM_022678465.1 mRNA upstream 34671 36532866 ~ 36540733 (-) True LOC103044904
XM_007241996.3 mRNA upstream 88768 36586963 ~ 36659597 (-) True LOC103042975
XM_007241998.3 mRNA upstream 168004 36666199 ~ 36686553 (-) False LOC103043480
XM_007241997.3 mRNA upstream 168004 36666199 ~ 36686553 (-) True LOC103043480
TU198491 other downstream 577487 35883609 ~ 35884321 (-) True G146686
TU198348 other downstream 982614 35463197 ~ 35479194 (-) True G146584
TU198346 other downstream 1029888 35422965 ~ 35431920 (-) False hspa12b
XR_001518498.2 other downstream 2676387 33785095 ~ 33785421 (-) True LOC107197333
TU197806 other downstream 3356221 33100297 ~ 33105587 (-) True G146175
XR_002651059.1 other upstream 629220 37127415 ~ 37192500 (-) False poln
TU199053 other upstream 853883 37352078 ~ 37391735 (-) True G147092
TU199299 other upstream 1010466 37508661 ~ 37514452 (-) True G147302
TU199360 other upstream 1225197 37723392 ~ 37726759 (-) False mrpl52
TU199421 other upstream 1407570 37905765 ~ 37910873 (-) False LOC103047699

Expression Profile