RNA id: XM_007242007.3


Basic Information

Item Value
RNA id XM_007242007.3
length 2673
RNA type mRNA
GC content 0.49
exon number 22
gene id LOC103046336
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 36390105 ~ 36414090 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GGCTCCGCCTCGGCTGTAGAACAGCAGTCACAGAGCAGCAGCTCGTGCTTGGTGGAACGCGGGTGGAGAACAGGCAGTTTATCGTCATTAGAAGTGTTGAAGTGAACAAGATCAGAACAGAGTCAGAGCTGAGAGCAACATCTCTGTAGATCTGAGAGCACTGAGCTGAGGAGCTGCTGGACATGGAGCTGTACTCAGAGGCTCTGCAGTACCTCACTCATCAGGGGCTGCCAGAGGAAGAAGAGGTTGAGGACGTTGTTGGTTCAGACATGTTCCCAGACGTGTTCAGTAAGGAATCAGACTGGATTCCCAACTCTGATGTCCCACGGCTTCCAGACACGCCGACCTACAGAAGCACAGAGGACATGCTGTTGAAGAGGCTGCTGGTGCTCAGAGAAATCTTAATAAGTGAAGAGACCTACCTGTCTGAGCTGGAAACACTGCTTAcgCCTATGAAAGCTTTGAGGGCATCAGCAGGTACATCTCAGCCGGTGTTGTCTATCGAGCAGGTCCAGACAGTGTTTTACCAGCTGCCAGAACTCAGAGATCTCCACAGAGAGTTTCACAGCAGCCTCAAAGCCAAATTACAGGCTGTGGACTTGGATCAAGATGTTTCCGTCCAGATGCAGCAGAACACAGACTTTCAGGTGTCCGTGGGAGATCTCTTTCTGAAGTTTGTGAGCCAGTTAGGATTTTACAGAGGGTTCATAGACAATTATGAAAGTGCGGTCCAGATTGTGAGGAGATGTACCCTGTCAAACCCACGATTCCGAATCCTTGCTGAGAGCATGATGTCCACCAAAGGGCCAGACAGCTCCAGGACTAAATACACATTCGAAGCTCTCCTCTACAAACCTCTGGACAGAGTGACTAAGACCACTTTAGTGCTGCATGATCTTCTGAAACACACGCCAGATGATCACCACGACAGTACACTGCTACAGGAAGCTCTCCGTCTGTCCAGCAGCTTCCTGTCTGGGGTCAATGAGGACTCGCAACACAAGACTGCAGTCACTCTCAGCAGAGGAGAGaggaGGCAGCTGGTGCGTGACGGGTTTGTGGTGGATGTCTATGAGGGCGGACGCAACCTCAGGCACCTGTTTCTGTACACAGATCTACTGCTGTGTGTCAAACTGAAGGGCGGGACTGTGggGAAGCCAGTACACTACAGGTTTTGTTGGTATATGCCACTAGCAGGGATAAAGATGCACTGGGCAGTAGAACAGGAAACATCAGCGGAGCTTCAGCTCAAAATCAGCAACATGAGAGCGAAGATGTTCCACTGTAGGCGTGACTTTCAAGAGTATCTGagtAAAGGGTCTCTTTCTCGTGCTGCTGATCGCTGTAGAAGAAAGTTAGAAGCCTGTGAACTTTGGCTTCTGACACACAGCCCTTCTTTCATCTTAGAACTGCAAAGCACCAACAGCAAGagtCACACAATTCACTTACCGTCTCTATATGAGCTTGAAGAGTGGAGAGAGGCAATCAACAAACTCAAAGCAGAGGGTCTAGAGACAGTGCCCCCAGACTTACTCTCTCTGGCCAACTCTTGTGTAAAATTGAGAATGACTCAACAGCCACCGCTCTGCTGCCTTCAGCCTgACAATGTGGGGAACAGCATGTGTGGGAGCCTGTGTGTGGTTGTTCATTCGGCCTGTGGTCTACAGCAGCCTGCAAGTATCTATGTTTGTATTGAAGTGGATGGCTTTGAGATTTTTGACAGAAAGGCCAAAACCTGCCTCTCCTCTTACAGCCTGACACCACATTGGGACCAGGAGTTGGTGTTGAAGGTGGATGGAGCTCGTCATCTCCGGCTGCTGTGTCTCTCTCAGTCAGAAGAGGATATTATGGGCAAAGCAACACTAAAGTTAGATCCTGTTGATATGTTAAAGAAGTGGAAGAAAATGACCTTGAATCTGGGCTTGATTGAGGTGACCATATCAATCAAATACAATCCCCATCCTCTGGATCCACCCAGCTTTACTCCCCTCCAGCAGAAGCCAGTGTTCTGTGTTCTGATTGGAGATGTAGCAAGTCAGGAGGGTGTGCTGGTGCCTCATATAGTGCGGTCCTGTGTGGAGGAGGTTGAGAGGAGAGGAATGGAGGAGGAGGGAATCTACAGAATCTCAGGAGCCAGCTCTGCGATTCAGGCTCTCAAACACGCGTTTGACAccaATTACTGGGAGGCTATGAGTAAGCTGAGAAGTGTGGACGTGAATGTAGTGTCTGGAACACTCAAGCTGTACCTGAGGGAACTACCTGAGACTCTCATTCCAACTGACCATTTCCAGAGTCTCTCCAAAGCACTGGATCTGTCTGACCCTTACCTCAGAGCAGGCATCATGTTGTCGGAGCTACAATCTTTCCCTGATGTGAACCGCAACACTCTGCTCTTCCTCTTACACCACCTCAAACGGGTTGCCAAAAAAGAGGAACAGAATAAAATGTCTCTCAGTAATCTGGCCACAGTATTTGGCCCCAGTCTCCTGCGCCCCCCAGTGTCCAGTCTCAATCACTGTGGACCACCAGTCGACATCTCTCAAGAGGTTGAAGTTCAGGTCCAAGTAATTAACCTCTACCTGCAGAACCAGAATCTTCCAGAAGCTCTCACTACCAAAACACTTGATATAGAAGAAGAGACATGAAAATTAAAAGAAGactgcatatttttta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU198763 lncRNA downstream 69228 36298672 ~ 36320877 (-) False hdac8
TU198765 lncRNA downstream 71898 36316664 ~ 36318207 (-) True G146875
TU198591 lncRNA downstream 224124 36161600 ~ 36165981 (-) True G146754
TU198590 lncRNA downstream 224124 36164940 ~ 36165981 (-) False G146754
TU198588 lncRNA downstream 226781 36159756 ~ 36163324 (-) True G146753
TU198785 lncRNA upstream 26665 36440755 ~ 36444051 (-) True G146892
TU198788 lncRNA upstream 27595 36441685 ~ 36443715 (-) False G146892
TU198786 lncRNA upstream 28545 36442635 ~ 36443309 (-) False G146892
TU198787 lncRNA upstream 28716 36442806 ~ 36444051 (-) False G146892
TU198827 lncRNA upstream 249392 36663482 ~ 36664174 (-) True G146922
XM_007242013.3 mRNA downstream 51441 36298639 ~ 36338664 (-) False hdac8
XM_007242012.3 mRNA downstream 51441 36298639 ~ 36338664 (-) True hdac8
XM_022678461.1 mRNA downstream 51441 36322970 ~ 36338664 (-) False hdac8
XM_007242014.3 mRNA downstream 97445 36288006 ~ 36292660 (-) True cited1
XM_007242015.3 mRNA downstream 105057 36280498 ~ 36285048 (-) True rps4x
XM_007242006.3 mRNA upstream 16834 36430924 ~ 36445667 (-) True LOC103046032
XM_007242004.3 mRNA upstream 47718 36461808 ~ 36498452 (-) False acadvl
XM_007242005.3 mRNA upstream 47718 36461808 ~ 36498195 (-) True acadvl
XM_022678464.1 mRNA upstream 86301 36500391 ~ 36521635 (-) True dvl2
XM_022678465.1 mRNA upstream 118776 36532866 ~ 36540733 (-) True LOC103044904
TU198491 other downstream 505784 35883609 ~ 35884321 (-) True G146686
TU198348 other downstream 910911 35463197 ~ 35479194 (-) True G146584
TU198346 other downstream 958185 35422965 ~ 35431920 (-) False hspa12b
XR_001518498.2 other downstream 2604684 33785095 ~ 33785421 (-) True LOC107197333
TU197806 other downstream 3284518 33100297 ~ 33105587 (-) True G146175
XR_002651059.1 other upstream 713325 37127415 ~ 37192500 (-) False poln
TU199053 other upstream 937988 37352078 ~ 37391735 (-) True G147092
TU199299 other upstream 1094571 37508661 ~ 37514452 (-) True G147302
TU199360 other upstream 1309302 37723392 ~ 37726759 (-) False mrpl52
TU199421 other upstream 1491675 37905765 ~ 37910873 (-) False LOC103047699

Expression Profile