RNA id: XM_007242018.3


Basic Information

Item Value
RNA id XM_007242018.3
length 4775
RNA type mRNA
GC content 0.50
exon number 8
gene id nhsl2
representative False

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 36115657 ~ 36273884 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTCAAGCACGTTCACGCAAACAAACACCATCCCGGCTCCAAGCCTGCACATGCGGAGCAGTGCTCGCTTTCACACACttgtgcgcgcacacacacacgcacattcacacatatatacacagacgCACACACGCGTGCACACGTCGCCTGTCACTGGCTGTCAGTTCGCTGGGCTGCAAGCTTGGGATGAGGTGATGTTTTGGGACAGGAAAACACGGAGCCATGGGCAATTCCCAACGCCGGGCCAAAGGGAGGCACAAAGCCAAGGGGGCAACAGCCACCACCAACTTGGACTCGGAGAGCAAGCGAACGGCCCACTTCCAATCGTCATGGCAACAGCATGTGAATGTGTTCGGCTCGTGGAGTAGGCCGGAGTGTGTGCAGGAGCTGCACCAGGAGGCTCAGCTCAACCTCCAGAGCCTGCTACAAGACTTTGAGGAGCAGCTGTATGATAACAGGGTAACTGGGCAGACATTCCGGCACCCCTCCTCTCAGAGCTCAGAGGACACCTCCACCACGCTCGGCCTGTCGCCTTCCTCACTCAACAACAAGAAGCCCGAGTTTGTCTTCCTGCCTGCCAATAAACAAGTGTGTGAGGATGAGGGGACATCAGTAGGGATCCGGGCTCAGGACCCAGCTGCCTGTGGCTCAGATCGTGCCCTCCTTGGCTGGAACTCTTCAGTCGGGCCTCCTGTAGCAGAGAAACCTCGCTGGCACCTCACTGGGCGACACACTCCTGCACACCTTGTCCCCATCGACATTACAGGCCAGAGCTTTGATAAGCACGCCAGCGAACTCCAGGCCCCCTTTAGAACTGAGCCGGCGGTCAACCCAAAGACCGTCCGCCGCCCGAGGAGTGTGATCGCAGGCCCCGATGTCACGCTGCACTGCCAAGGTGATGGCAAGATTCTTGCCGTTGATCTGATACAAGGTGCCTGTTCTCCTGACTCCTCACAGCCCAGATCTCTGGAACCCACCACAGAGAACACAGGAGAGCAACACGTACCCTTACGGAAAACCCAGAGTGACCTAGAGCACAGTGTCCCATCATCCCCCAAGAAACTCTCAGGCATGATGGATCACGCCACTCTTATGTGCCCAAGCCCTTCCTGGAATGGCCCAAAAGGTTCCACCTTCTCTCCTTCCTGGAATGATTCTTACAACTATGCTCTGGCCCCAAATTCTGTCCCTAAGCAACCTCTGTCCAAACCTGGGATGTTAGCACCAGGCAGTGGTGGTGGCCTCATGTGTCCTTCCCACACAAGCTCTGGTCTGTCTATGAGTTCTGGATCACACTCAAGCTCCTTCACCTCTATCTCAGAACCATCTGGACACAGGGCATATACAGTCGCACATGGCAATGCCATGCCAGGAAAGAGAAATGAGACACAGAGCACAGCAATCAGTCCAGGTGCCAACCACAAGAATGACAGAGAGAAAAGGTCGGCACGTGCCAATGCTTTCAAGTTCCGAGAGCGCTCCCTTTCCACACCAACAGATTCTGGTTCTCTCTGCTCAACAGACAACATTTGCTGTCCAGGTGAACCAGTGACTATGGTGCGAGAAGGTGAAAGCTATGCCCTGCTCTATCCAAGCAACAGCTCTGAAGACAGCACCAGCACTGACAATGTATCAGTTGCAACAGGGTCAGACTTTTTCCCAGAGGGCCGACTGAGATCACGATCGCGCAGCATCTCGCTGAAGAAGCCCAAAAAGAAGCCACCGCCTCCAGTTCGCAGTGTGTCCTTAATGAAAAACTTGTCACAGTCTGGTGGGATTGGATCTCATCATGGAGAAGGGCACTTCCGAGGAGGTAGACCCAAGAGCCTCTTCATTCCTCGAGATCATGAACTCCAGGATACGTTTCAACCCGAATTCCTCATGGCATCTAAAGCAGAGGAAGAGACTCACAGCAGTTTGGAGACAGCCTCTGATACCTCTCAGCCTcctgacagagaaacagaccTGGCCTTCCCTCCTCACTGGCAACTGAATGAGTGGAAGTCCAACAATGACCCTTATCGCTCATTATCAGGCTCTAGCACAGCTACAGGTACTACGGTGATAGAGTGCATTAAAGTGCGAGGAAGCTCAGAGTCTTTGAATTCACCGCAAACCTCACGAGCCACTTCCCCTTCTCAACTTTCCATTGAAGCTGAGACAAAGGTCTCTCCATTCAAACCTCCATGCCTGATGTCCCCATCCAGCGGCTACTCGAGTCAATCTGAAACACCCACTCCAACTATTACAAGCTCTGTCATAAGTGCACCCACCCCAACAGCATGCAAGATGCGTCCAAAGATTCCAGAGAGAAAATCCTCACTTCCAGCCACTTCCCCAAAAAACAAATCTCGGTCTCGTCTGTCCTTCGAGCTACCTGTGAATTCTCAAATAGACTTGTCTTCTGTGAAACCCAAACCTAAAGCTTGCCGGAGACACTCGGACACATCTACAGCCAGCAAGCCAGGAAAACTTAGTCCCAGTCAATCGTCACAACCCATGGTTACTACAACAGACCTACGCAACATCAGACTTCGTTCAGTCAGTCGCTCAGAACTTGAGGACAGTCCTGATGGCTCCTCTGACATCATAGAGGAAGAACAAGGTCGTGATCTCAGTCCTCCTATCACCCCCTCCAGCTCTAAACCACCCAAACCACCAGTTGCAGTAAAGCCACCACTGCCTAAACGACCCATGAACTTAAGCCTCAAATCTCCCTCATCTTCCCCTCAGACCCAAGAATCTCCACCGGCCTCCCCAGTAGACCGACCCATGCCTCTAGGTAACATCTACATGGTGGTAAGGAAGCCCAAACCCAAAAGGCCAGCTCAGTCACCCGTTAGTCCATCTGCAGTGACCCCTCAAGATCATTTGCCCAGCTATCCACCTCCTCTCCCTGAGTTTGATCTTGAACATGGAATCCCAATTGAGGAAGATTATACCATTCCTAGCAGCCCAGAGAGAGAGGATAAGAGCAAGACCCTACCTAGTCGAATGACCATATCCTGCTTAGCTGAGCTGGACAGGAAGAAACCCAAGGTACCTCCACCAGTGCCCAAAAAACCAAATGTCCTTCTGTTACCTTCCACTACTGTCCAAACCAATGGGAATACAGATAAACAGACTCTCCTTCCAGACAGTGGCTCTCAGTCACCCATAGGTCCGCCACTAACTGAAATTGTAGAGGCAATTTCTAAAGAGGTGGACCAGGAAACCCCCAGTGACCAAGAGACCTTTGGGATCCCTGAGAGCAGCAACCTGCATCATGAAAATCTAGGAGATCTGGACACTCTTGgaaatcataatgtggcaaaggATGATGCAGCAAAACATGCAGGATCTTATCATGATGTTAATGATTCAgctcttgctgcagatggagtaaCAGAATCTCCAGTGGATAACAACAGCACCAACGACAAAACAGAACTCCACATCTCTGAAGAGACAGATGACGATGTGTTCGTCCAAACTCCTACAACTCACACAACTGAGGACCTTTTCACCATCATACACAGATCCAAGAGGAAGGTCCTAGGCCGTAAGGAACCAGGGGACTCATTTGGCAGCCGGCAGAGTCTTGTCTCACCTGTGAAGAGCAGCGGCAGTGACATTCGAACGCTCACCCTGGGAAGCACCCCGAGGTCGAGCTCTCGGAACGAGAACTTCATGGCTCTTCTTCAGAAGAAGAGCAGCAAGTCAAGCAGTGGAACCCGGGTCTCTGCCATGGAGCTGCTGAAGAGCACGAACCCTCTGGCTCGGCGCGTCACCGAGTTCTCACAGTTGGATCCGGACGTTGCTGGAACCGACCCATCTAAAGTGGCTCCACCAGACCAGTGATTCATCTTGTATAGAACCACATGCAGGATCCTATCTGTTACGGCTGGTTTTCTGTTAAAGCTCCACTGCGCATCTATATGGTTTCATTTCCCAGGACCTCCCACTGTCTGGCTGAGGAGGCGCAGGAGTTGTTGCAGTGGGAACACTGGGGTCTCACTTTTTTGTCTTGATGTCATGCTGCTGTGGAGCTCTGTCCATGTCATAGGAATGGGACCTAGTGTTGGGACACTTGAACAGTGTAAACCAGTAAGTTAGGATGGCCTTGTATTCTGCCACTGAGAAAGTTCATGTACATGAACAATCGTATGGAAATGGTAACATTTTGATACTCGACACAAACATTAAGGGGCACCAGCTAATGCATGTGGCCGAAATCTGCAAAgcccatttttaaaatgaatacggGACTGAGGCAGGTGTGAGACTTGAGATCACACACAAAGCAGAGCAGACTGAGCTGAGCGTCcattcagaaacagaaacattcCATAAAAGGTTACAAGCAAAGCCTGGTACCCCTtaaaacaaagcactttttcaTTACAAGAAGTAGTTTACAGATtaagatgtattttttggtttgctGTCGTTTTTCCCCAGAAATGATACGAAAGGGAATATGAAAGTCTTATGGGTTTTTATTTAACCTAAAGAAAGCtaaacatatacaatatatatatgctaAAGTGTAAATTCAAAATTATTTGATAAAATAggttaaagacaaaaaaaaaaaatccatttacgTGACTTTACTTTTAAAACTGCCTATTGTGAGAGCGTTCACAGCACAGAGGGATCAAAGTTACAAAATGGACCACCGCCATGCAGCACACTTCACCAATACTGTGACCCCCCCTATCTATAGCTCTTCACACACTGCCAACATTGGCaattgtgcagtgtgtgtgtgtgtagtgatgctATGTTTTTGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU198564 lncRNA downstream 80155 36031139 ~ 36035502 (-) True G146743
TU198510 lncRNA downstream 188129 35926843 ~ 35927528 (-) True G146703
TU198471 lncRNA downstream 368543 35741331 ~ 35747114 (-) True G146666
TU198470 lncRNA downstream 381354 35732760 ~ 35734303 (-) True G146665
TU198447 lncRNA downstream 402344 35709442 ~ 35713313 (-) True G146654
TU198763 lncRNA upstream 113790 36298672 ~ 36320877 (-) False hdac8
TU198765 lncRNA upstream 131782 36316664 ~ 36318207 (-) True G146875
TU198785 lncRNA upstream 255873 36440755 ~ 36444051 (-) True G146892
TU198788 lncRNA upstream 256803 36441685 ~ 36443715 (-) False G146892
TU198786 lncRNA upstream 257753 36442635 ~ 36443309 (-) False G146892
XM_007242022.3 mRNA downstream 8798 36037008 ~ 36106859 (-) True LOC103023665
XM_007242023.3 mRNA downstream 30389 36037008 ~ 36085268 (-) False LOC103023665
XM_007242024.3 mRNA downstream 30389 36037008 ~ 36085268 (-) False LOC103023665
XM_007242026.3 mRNA downstream 98133 36012780 ~ 36017524 (-) True LOC103024731
XM_007242027.2 mRNA downstream 126794 35971343 ~ 35988863 (-) True LOC103025043
XM_007242015.3 mRNA upstream 95616 36280498 ~ 36285048 (-) True rps4x
XM_007242014.3 mRNA upstream 103124 36288006 ~ 36292660 (-) True cited1
XM_007242013.3 mRNA upstream 113757 36298639 ~ 36338664 (-) False hdac8
XM_007242012.3 mRNA upstream 113757 36298639 ~ 36338664 (-) True hdac8
XM_022678461.1 mRNA upstream 138088 36322970 ~ 36338664 (-) False hdac8
TU198491 other downstream 231336 35883609 ~ 35884321 (-) True G146686
TU198348 other downstream 636463 35463197 ~ 35479194 (-) True G146584
TU198346 other downstream 683737 35422965 ~ 35431920 (-) False hspa12b
XR_001518498.2 other downstream 2330236 33785095 ~ 33785421 (-) True LOC107197333
TU197806 other downstream 3010070 33100297 ~ 33105587 (-) True G146175
XR_002651059.1 other upstream 942533 37127415 ~ 37192500 (-) False poln
TU199053 other upstream 1167196 37352078 ~ 37391735 (-) True G147092
TU199299 other upstream 1323779 37508661 ~ 37514452 (-) True G147302
TU199360 other upstream 1538510 37723392 ~ 37726759 (-) False mrpl52
TU199421 other upstream 1720883 37905765 ~ 37910873 (-) False LOC103047699

Expression Profile