RNA id: XM_007242024.3


Basic Information

Item Value
RNA id XM_007242024.3
length 2751
RNA type mRNA
GC content 0.53
exon number 13
gene id LOC103023665
representative False

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 36037008 ~ 36106859 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ctcccctcttccctccctcctctcctccctccagCGCGCTCTCTGAGTGTTAACTTTGAGTCCTGCTCTTGTCTGCCCTGTGGCCCCGTGCTGATTTACTTTAGTAGGCAGCAGATGGAGAGAGCAgacctctctcgctctctctcgttctgtctctcctagtatctctctctctttctctgagttCTGCTCTATCCCTCTCTATCCCTGTCTCTCCTCTGTGTGGATTGTGGTCCCTCTGGCTGGGTTGGACTGGTGTTACCTGTCTGGGCAGTGAGCAGTGCCTGAAGAAGAATAGCTGGAGTTCTTTCTGAGTTTGAGAGAGACCCTCTCACACTCTGTTTGGCTCCTTTACTGCAGGTACAGTCACAGCTGGAGAGTCGTGTGTGGggTGACCACACGTGGGCCACCATGTTGGGTCAGAGCGTGAAGTTGCAGCCGGTGGCCATTCAGAGCCTGTCGGAGCTGGAACGAGCTCGTCTGCAGGAGGTGGCTCTCTATCACTTAGAGGAACGTGACCTGGACTTCAAAATCCGTATCCCAACAGAAACTCGCAAGAGGAGGAAATCTCTTCGGAGAAAGTTTGATTCCTTTTccaaggaaaagaaagagcgaGAAACAGCCTCCAAGGCGTTTGGGATCCCACTGTCGCAGGTGATCGCTAATGACCGTGCCTACAAGCAGCGCCAGGATGCTCTGAAGGAGAGCCGCAGGGACTGCCTGGAGTTGGAGGCCAGTGTCATGCGCTTCCGGGCAGAGAAATGCCAGCAGAATGGAAGCAGAGTGCCAAGCAACAGAGCCACGGGCCCTGcagcctcctcctcttcatcatcatcctcatcgtCATCAGTGCTGGAGCTCCACAACAAGCCCCTGTCCCCCACCTTCCTGGACAACAGCTCCCGCAGTCACAGACGGgGCGGAATGTCAGTGGACTCGATATCAGACTTGGTGGAGAGTCAGTCCAGGTTGCTGGAGGCTCTGCAGCTCTCTCACCCTAATGAGCTGGAGATCAAGAAGACGTCCACTGGCCGCACACAGGCTAAACTGAGCCTGAACCCCATCTACAGACAGGTGCCCCGGGTCATGGAGCGCTGCTGTCAGCACATCCTCACCTACGGACTGCAGACGGTGGGGATTTTCCGAGTGGGCAGCTCCAAAAAGAGAGTGCGCCAATTGCGTGAGGACTTTGACAGCGGGACAGATGTTCTTCTGGACGAGGAACACAGTGTTCATGACGTGGCCGCACTGTTGAAGGAGTTCCTGAGGGACATGCCTGACCCTCTGCTACCCAGAGAACTCTACTCTGCCTTTCTGCACGCGAACAATTTGCGGGGAAGTGATCAGTTGACGTATCTGCAgcagctgctgtatctgctgcCTCCGTGTAACTGTGACTCTCTGTTGAGGCTGTTGAGTTTACTGCACACAGTCCAGGAGCATGCTCAAGACTCCACAGGCCCTGACCAACAGGAGatacCAGGTAACAAGATGACTGCAGCAAACCTGGCTGTGATCTTTGGGCCGAACCTCCTGCAGAAGGAAAGAGGGACAGAAAAGGACCTGAGCCCACTGGCTATGGGTATAGAGGACAGCGCCGCCATCATCTCTGTCACACTGCTACTCATCCAGTACTACAAGCGGCTCTTCACgGTATCTGCAGAACTTCAGCAAGAGGTGCTCATGAGTCTAATTCAGACTGATCCAGATGTCATCGACTACCTACTGCGCAGGAAACTCAGTGGCAGCAGTGTGACAGTGGAGCCGGACACAGTGGCCCGCAGGGACACTCAAACGTCTCTGGACTCAGTGGGTCAGTCCAGTGATGACCTTTCCCCAGTAGAGCCCATCTCCCCTCTGTTTGGGGACTCTGCCAGCAGAGGCAGTCTGACAAGTGAGGTCTTCATTAATGTGCTTCGACTCAACACCAGCAGAAAGCgctGTTCAGAACCTCCTCCCAAGTCCATAGCCCAGATGCGGCAATTCCACTCCCATCACAACTTGTTGAGTCTAACTCAGCCGTCCAGCCACATTATTGAAGATGAGCGAGAGCTGCCGGAGCGGAGAGGCGGCGGCATGAGGCCGGGGTGCCCGGGAGAGGGTCCCCTGTACGGCCAGGGGCAGCAGGACGGCGGTTCTCAGCCCCAGAGCCCTAAAGAGCGGAGTGTGTGGGTGCGGCAGGGCTCCAACGCCTCCTCCACCACCTCAGAGGACAGCAGGCCGCCGAGCAACTTCTGGGACTTTTTCACTGGCAAGATGACCATGATCAGAAGAAGTCCATCTCTCCAGAACTTCTTCATCGACCCCTCTCAGTATGAGAAAAGTTgagtggaataaaaaaaagcacagggACACTTTTTTTCTACGGACTACATTTTTTTAGCCTGTGAGGCAGCTCTTGTATGAAGGAGTGGAACAGCACTGTCTGAAAGCTGAAGATGCTGTGATACCACAATGAACCACAAGGGAGCAACAGTCATCTTCACTGCACCATCTGACCACTTATCTTCAGAAAAATAAGGGTTCCAAGCTAGCCTAGCATTCTTTTAATGAACTCACACTACAGCATCTATCAACATTTCAGAGGTTTAGGCCCAGAAGATTAAGGAATTCTCCTGAATTTGAGGATGAACTGTGGAAGGACTGCTGAAACTGTACAAAATAATTGCACATAATCAAAACTACAAGACTGACTTTGTCCATATGTACACAATACCActatctttaaataaaaaaatacattgttacAAA

Function

GO:

id name namespace
GO:0007165 signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU198564 lncRNA downstream 1506 36031139 ~ 36035502 (-) True G146743
TU198510 lncRNA downstream 109480 35926843 ~ 35927528 (-) True G146703
TU198471 lncRNA downstream 289894 35741331 ~ 35747114 (-) True G146666
TU198470 lncRNA downstream 302705 35732760 ~ 35734303 (-) True G146665
TU198447 lncRNA downstream 323695 35709442 ~ 35713313 (-) True G146654
TU198588 lncRNA upstream 74488 36159756 ~ 36163324 (-) True G146753
TU198591 lncRNA upstream 76332 36161600 ~ 36165981 (-) True G146754
TU198590 lncRNA upstream 79672 36164940 ~ 36165981 (-) False G146754
TU198763 lncRNA upstream 213404 36298672 ~ 36320877 (-) False hdac8
TU198765 lncRNA upstream 231396 36316664 ~ 36318207 (-) True G146875
XM_007242026.3 mRNA downstream 19484 36012780 ~ 36017524 (-) True LOC103024731
XM_007242027.2 mRNA downstream 48145 35971343 ~ 35988863 (-) True LOC103025043
XM_007242028.3 mRNA downstream 72597 35944355 ~ 35964411 (-) True LOC103025363
XM_015603981.2 mRNA downstream 171077 35735172 ~ 35865931 (-) False col4a6
XM_022678457.1 mRNA upstream 30389 36115657 ~ 36273884 (-) False nhsl2
XM_022678455.1 mRNA upstream 30389 36115657 ~ 36273884 (-) False nhsl2
XM_007242016.3 mRNA upstream 30389 36115657 ~ 36248183 (-) False nhsl2
XM_007242018.3 mRNA upstream 30389 36115657 ~ 36184882 (-) False nhsl2
XM_007242019.2 mRNA upstream 30389 36115657 ~ 36178120 (-) True nhsl2
TU198491 other downstream 152687 35883609 ~ 35884321 (-) True G146686
TU198348 other downstream 557814 35463197 ~ 35479194 (-) True G146584
TU198346 other downstream 605088 35422965 ~ 35431920 (-) False hspa12b
XR_001518498.2 other downstream 2251587 33785095 ~ 33785421 (-) True LOC107197333
TU197806 other downstream 2931421 33100297 ~ 33105587 (-) True G146175
XR_002651059.1 other upstream 1042147 37127415 ~ 37192500 (-) False poln
TU199053 other upstream 1266810 37352078 ~ 37391735 (-) True G147092
TU199299 other upstream 1423393 37508661 ~ 37514452 (-) True G147302
TU199360 other upstream 1638124 37723392 ~ 37726759 (-) False mrpl52
TU199421 other upstream 1820497 37905765 ~ 37910873 (-) False LOC103047699

Expression Profile