RNA id: XM_007242026.3


Basic Information

Item Value
RNA id XM_007242026.3
length 1771
RNA type mRNA
GC content 0.48
exon number 4
gene id LOC103024731
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 36012780 ~ 36017524 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTCCGCCCCTCGGAGCAGATTCAGCAGCAGCGGGCGGGCGGACGGCGGACGGGCTGCTGTCTGTGCTGTGGGTCGCTCGCTCGGACGGTCGGAGGAGTTACGGTGTCCTGTCCTCTCTGAGCCTCTTTCTGTCTTATCGTAGCCTCTTCTGACCCGTCCTCAGGACAGCAGTCAGAGCCTGGAccacaccagcagcagcagcagcacgggAGGAAATCCAGCGAGTGGATCAGTTAGGAGATGTTTTTGATCCACAGGAGTTTGAGAAGATATGATTTCAAGTGGATATAAACTACCACAGACCGAGCGAGCCGGAGCTGTGCACTGCGCTAttggaaagacagaaagacaattTGCGGGCTTGGTGGAGGAGGTATATCCATAACTCATAAAGCTGTTTATTATCACGCTTTTACAGCTTTTCTCAATGCGCCTTAACGACCATCCAGGAACAATGAGCAGCGGATCTGGCAACTTTCTGCTAGTTCCCATACCGGAGTACCCCGTCCTGGACTGTGTGCCTAATAAAAACGTTAAAATAGTCGTTTTGGGAGCGAGTAACGTCGGCAAAACAGCCTTGATAGTAAGATTCCTGACCAGGAGATTCATTGGAGATTATGAAGCTAACACAGGGGCCTTGTACTCGAGGAAAATCAGTCTAGACGGAGAGCAGGTTTCCTTACAAGTGCAGGACACTCCCTGCGTCTCCCTGCAGGACGATGCAGAGGGTTTGTACTGCCAGGAGCAGATCAACCGGTCCATCTACTGGGCTGATGGTTACGTTCTAGTCTTCTCCATCACTGACCTGCACAGCTACAGGACCATCCAACCTCTGTATCAACACGTGCGCCGTATCCACCCCAGCGGCAACATCCCCATCATTCTAGTGGGCAACAAGAGTGACCTACTGCGGGCGAGGCAGGTACCGGCTCACGAGGGCGAGGCGCTGGCCGCTGAGCTGGGCGGACCGTACTTCGAGGCTTCGGCTCGGGAGAACCACGAGGGTGTGCACACCGCCTTTCTGCACCTGTGCCAGGAGGTCAGCCGGGCGCTGGGAGGAGGAAACGGGGAGAAGAGGAGAGGGGGTCTTCATCTCGCTCGACCTAAGAGCCCAAACATGCAGGAGCTGAAGAGACGCTTCCGACAAGTGCTATCATCTaaagtgaagtcagccactgcactttgatgaagatgaagaagacAGTGAAGATGATCTTGCTGATAAGGATAAAAATCCAAAGACTGCATCAGGGAGCAGATTGAGAGGCATGTTCTGGTATGCCTTTAATCATCATGAGTGGTCAAAGGGTCAAAGTTGgatctttttaaaatatgaatgagATTGGAatacattttcatacataaactGTTTGGATTGTGTTGTTAACTTTCATCTAAGGCATCCGTTCCCTGGATGGACACACAATGGGATTGATAAATGatgaatgttattttttaatgacttttatAGGCCTATACACCAAAGCAGTCATCTGGCATGCCtgatataacaataacaataacaatctGTTTCTTTGGCTGAGGTACAAAGCTTTAGTATAGCCACAAAagatcaatatcacaataatgatTAAACCATTAAATACACCAACCAGCCATAACATAGAAaccactgacaggtgaagtgaacaattcagttgtttttttcaactgtccaatgaaaaacaagtatctccatttttgtaaatttttagtttactacacaatttgaacacacaaactctcccttacactgtgacaaaatttcttg

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0045943 positive regulation of transcription by RNA polymerase I biological_process
GO:0016020 membrane cellular_component
GO:0005730 nucleolus cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07852 RASL11A; Ras-like protein family member 11A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU198510 lncRNA downstream 85252 35926843 ~ 35927528 (-) True G146703
TU198471 lncRNA downstream 265666 35741331 ~ 35747114 (-) True G146666
TU198470 lncRNA downstream 278477 35732760 ~ 35734303 (-) True G146665
TU198447 lncRNA downstream 299467 35709442 ~ 35713313 (-) True G146654
TU198351 lncRNA downstream 551950 35459003 ~ 35460830 (-) True G146585
TU198564 lncRNA upstream 13615 36031139 ~ 36035502 (-) True G146743
TU198588 lncRNA upstream 142232 36159756 ~ 36163324 (-) True G146753
TU198591 lncRNA upstream 144076 36161600 ~ 36165981 (-) True G146754
TU198590 lncRNA upstream 147416 36164940 ~ 36165981 (-) False G146754
TU198763 lncRNA upstream 281148 36298672 ~ 36320877 (-) False hdac8
XM_007242027.2 mRNA downstream 23917 35971343 ~ 35988863 (-) True LOC103025043
XM_007242028.3 mRNA downstream 48369 35944355 ~ 35964411 (-) True LOC103025363
XM_022678453.1 mRNA downstream 146849 35735172 ~ 35865931 (-) False col4a6
XM_007242022.3 mRNA upstream 19484 36037008 ~ 36106859 (-) True LOC103023665
XM_007242023.3 mRNA upstream 19484 36037008 ~ 36085268 (-) False LOC103023665
XM_007242024.3 mRNA upstream 19484 36037008 ~ 36085268 (-) False LOC103023665
XM_022678457.1 mRNA upstream 98133 36115657 ~ 36273884 (-) False nhsl2
XM_022678455.1 mRNA upstream 98133 36115657 ~ 36273884 (-) False nhsl2
TU198491 other downstream 128459 35883609 ~ 35884321 (-) True G146686
TU198348 other downstream 533586 35463197 ~ 35479194 (-) True G146584
TU198346 other downstream 580860 35422965 ~ 35431920 (-) False hspa12b
XR_001518498.2 other downstream 2227359 33785095 ~ 33785421 (-) True LOC107197333
TU197806 other downstream 2907193 33100297 ~ 33105587 (-) True G146175
XR_002651059.1 other upstream 1109891 37127415 ~ 37192500 (-) False poln
TU199053 other upstream 1334554 37352078 ~ 37391735 (-) True G147092
TU199299 other upstream 1491137 37508661 ~ 37514452 (-) True G147302
TU199360 other upstream 1705868 37723392 ~ 37726759 (-) False mrpl52
TU199421 other upstream 1888241 37905765 ~ 37910873 (-) False LOC103047699

Expression Profile