RNA id: XM_015603987.2


Basic Information

Item Value
RNA id XM_015603987.2
length 7577
RNA type mRNA
GC content 0.45
exon number 8
gene id nwd2
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 34465465 ~ 34556703 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTCATATGCATGAGAAATCCTGCCCGGGGTAGGAGCCTGTCTTTAAGAACGCCATTCTCCACCTGAACCGTGACTCCAGCCAGCATGAGGGAAGCCTGCCTGAGGTCGGGGGAACCTCAGCTGTAATAGAGAGAATAAGATTACAGGTCTAGCAGGAGGAGGAAAGGAGAGGAAACAGAAGTAAAGTCCCTGCTTGCTCCCCATCTCTGCACTCCTCCTGTGTTCAGTGCCCCACGCTGAGTGCTCGGGCATTTATATGAGGACTGGGGGCCACACGGAGTCATCCAGCTCACGGCAAAGCGATCCTTCACTACACCGCGCTGGAAGTCGCCCCCCATGTGGCCGGCCGGGGTGGGCAGCAGGCAGCCGTGTCCGCGCGACTCCGCGCTGCGCAGGGCTGCCATCAGCGGGAATGTGCTCGCGCTGCCGCCACAGCACGTGCCCACGGGCAGGAGCGTGCGCGTCTTCATCTGCGCCAACCCTGACGATACGGAGGCAGAGAGAAACGCTCTGAAAGAACACGTCTACCCCAAACTGAGGGACTTCTGTAGGGAGAATTATGGCATTGAGTTCCAGGTGGTGGACCTGTACTGGGGGGTGGACCCAGAAGAGTGGGACAGTCCAGAGCTCCAGAGGCTGCGGATGAAGCttctggaagaatgcctgaaaACGTCTGCAGGTCCATGCTTTGTTggatTGGTGGGGGAGAAGTATGGCAGTATTCGTGTTCCAGGAGAAGTGGAGTCGGCTGAGTTTGAGATGATTCTGGATGCGGCAGTAGAAGCCGGTCTGGACACACGGATCCTGGAGGAGTGGTACTGCCGGGATGAAAACTCAGTACCGCCGGCATACTACCTCAAACCTAAAGCCCAGATGCTGAAGAACTATCAGAACTCGATGGAGTCAAACAGTGCTGCAAAGTCCAAGAATGATAAGGCCTGGCGAGCAGTGTCTGAAGAGATCAAGAAAATCTTCAGAACAGCAGTGCTACAGCTACAAGAGAAAGGGACCATGAAGAGTGTCCAGGCCAAGAAGTTCCTCTGCTCAGcGCTGGAGGACGAACTGGACTTTGCTTTAGGAAAGCAGACTCCAGCCTTCCtgaagaagtgtgtgtgttacatcCGCAAAATCTCCAACTTCGACCGCTTTGCCAAGCTACCAGAGATGGCGCGTTACATGGACATCATCACGAGTGGGGATCGCATTATGAGGAACCAGGAGGCCTACGAACGGCTCCTGAAAGTCCGAGACGAGTTTATCCCGACCGTAGTAGCAGCATCCAACCTCCGCGTCTATTCCTCGGTCACCCACTGCGACATGAAGCTGGGCTATTCCCAGGAAGTGGAAAGCCACTATGTGGAAGGCCTATGTAAGCAGTTCTATGAAGACATGGTGGACATCATTCAGGCCACAGTGCAGCAAAACTTTGACACCGAAACAGATCCACTGTATGACGAAACCATACAGCACCTCTCGCTCTGCAAGACCTACTCCTCATTTTATGTCTACAAGAGTGAGGCCCTGGACATGGTGCTGGAGTACCTGTACCCCTCCCAAGGAGGGAGGATAATGCCCCTAGTGGTGTACGGAGGACCCTGCACTGGGAAGACGCTGCTCCTTGCTGAGGTGGCCAAACAGGCCTACTCCTGTCTTCAGAAAGAAATGGGTCCAGAAACAGATCCCGTGGTCATTGTTCGCTTCATTGGCTCCTCTGACCTTTCTACAGACCTCCGTAACTTGCTCCAAAGTATATGTGAGCAGATTGCCATCAACTACAGATGCTTGATCCATTTTCTACCAAACAAGATCCAGGAGATGAGGGAATTGCTGGTTAACCTTCTGGGGGAGTCATCATTTCAACGTCCCCTAGTCATCATCCTAGATGCCTTGGAACAGTTGTCAGATGCAGATGACGCCCGCAAGCTGTGGTGGCTGCCTATCCACCTTCCTCGTACCGTCCGCATTGTGGTATCAACCCTGCCCAACAAGCATGGGATACTACAGAAGTTGCGTTGCCTGATTCATGATGATGACTGTTATGTAGAACTGATGCAAAGGGATCGCAAAGCATGTAGCCAGACACTCAAACAACAGCTTCTGAGCGTCAAACGAAAGGTAACCTCAGGGCAAcagatatatgtaaatgaagcACTGGCTAAATGTACTCTGCCCATGTTTGTCAACCTTATCTATCGTGAGGTAGTACACTGGCGGTCACACAAAGACGTTGACGACAAGTCCCTGTGCTCTACAGTGCACGAGAGTATAGAGCAGCTATTCTTTTCAATTGAGAATAAGCTGGGGTCTCGATTCGTCTTTCGTGCGCTAGGCTACGTTACGATGGCTCGTGCTGGGTTGACAGAGGTGGAGCTGGAGGACATATTGTCTTTGGACAATAGTGTACTTGGAGACATCATGGTCAGTTCAAATCTAAAGAGTCCCCTTAGAATCTCCTATGATCTTATTGCTCAATTGAAAGAAGAGCTGGAAGGTTACCTGGTGGAGCGACAGGTTCGCAACGTGACCCTGATGGTGTGGGCAAACCGGCATCTGCATCTCATTGCACAAAAACTGTACCTCAGTAATGAAGAGGATGTGCATCAGATGCACAGCCTTTTGGCTGAGTACTTCCTTGGAGCATGGGCAGGTGGCAGGAAGAAGATCTTCCACTGCGACAACAATCACTTTGCCTCATTGAACATTTCTCAGCACCGAAACCCTCATCACCAACAGAGCCTTCACGGCCACGACAAAGCTTCTGCGGACAAGCACTCTTACGACCGGCAAACTCCTGAACAACCCTGGGTGTTTCAGTGCAACCTGCTGGACCAAGACATCTTCTTTGTCAATCACAGGAAAATGACAGAATTGTTGTTTCATTTGACAAGAAGTGGGCGAACAGATGACCTTATGTATGGTGTAATCATGAACTTCAGCTGGCTGTACACCATGATAAAAATTGGGCAGTTTGACAAGGCACTAACAGACATTGACACGGCTTACACCTACACACAAGAAAAAGAGCTCAAGTTTCTTGCCAGCACACTGCGTAGTATCAAGATCAAGGTGAACAAGAACCCTGCATCACTGTCTGCCGAGCTTCAGCAAAGGCTCCTTCCTGTGGTTACATCCCTTCCTAAGCTCAGACACCTCTTACTAGAGTGTGACAAGGACGGGCCCAAATACTGCTCCATAGTGCCACTGCACTCCTCCATGGATGTCACTTACAGTCCAGAGAGACTCCCGCTGTGTACTAGCTACATGCAAATTGTGGAGATTCTGCCCACGCTGGCACCCAACATTGTAATCGTTGCTCTAGAGGATGGCTCAGTCAGTACCTGGGATGTTGAGAGCAGACAGCTGCTGAGACAGATTGACACAGCCAGGTCAGTCGTGCTTGGTGTTAAGCTCACCACTGATGAGAAGTACCTCGTTGTCGCCACCACGAAAAACACACTACTCATTTATGACAACCACAAGTCCTGTTTGTTGTCAGAAGTGGATATCAAAGGTTCAAAACACTGTGGAATCACAGGAGGTGTAGCATTCATCAACGGATTTACTTTGTCCAGCCACCATGCCTTAGCTTGGTTGGAGGCCAGCAAGGATGTCAATGTGATTGACTTGCTCTATGGCTGGCCCCTGTATCAGTTCCATTGCTGGTATGAAGTAACTTGTGTAGAGTGCTCCCCAGATGGAATGTACGCTTTCTGTGGGCAGTACCTAAACACCACTACCATATTCCACCTTGGAAGTGGAGATAAGCTTGCCACAATGACCTCTGAGTTCTCTGGTGGATTTGTAAAGTCCATCCTGGTTCTCGACACAATCAATCAGATGGTGATGATTGACAATGAAGGTAGTCTTTCTGTTTGGAGTACCAAAGATGTCACAAATCCCAGGCTTATGGAGGACTATGACTGTCGAGGTGATGACAGTGAGGTGGTAGGGATAGAACTGTCAGAAGATCAAAGATCCATACTGATTTGTAAAGCCAGAAGCATTGAAGTGCTTGACACCAAGCTGTGGAAGATGGTAGAGAAGTTCAAGGCCAAGCGCACTGAGAAATTTGTGGCAGCAGTGCTGTCAAAAAATGGCCAAAGTATTGTGGCATCCATGGAAAACACCTCATCCATATTTGTTTGGAGAAGAGACAGTGGGCAGTGCATGGCTAGCTTAATAGAGATATCAGGAGCCATCGTCAAGTTGATCAAGTCAGTGCATCATAACCTGCTCTTGTCTGTAGCTAGCAGTGGGGTTCTCTCAGTTTGGGACATTGACATCATAACAGCAATGTCAAACATCGACAAGACAGGAAAGCGGATCCAAAGTGTCCAGCTTTCAGGCAGGGAAGACTTTGTTTACACAATGGATGGTTCGGAAGCCATTCACAAGTGGAACTTCAGCACAGGTTTCATTGAGATGGTGTTCAAGCATGAAGGGCTTGTGGAGAACTGTGTACTCACCACATCTGGCGACCTCATGGTCACATCTGATGACAAATGTAGCCAGTACATCTGGCAGACAAACACAGGTGACAATATCTTCCGGATTAATGGCCAAAAGATATCCCAACTGCTCATCACCCATAATGACCAATTTGTAGTTTCCCTATGTGAACAAAATGCTTCTCGCGTCTGGAGACTTGCGACTGGACACAAAGTGTGCAACATCCTAGTAACACTCCAGCATGCTCTCATCACCACAGCAAACACATTCCTGGTCGGCACAAGTAAAAACAAGCTGTTGGCCGTTAGCTTGTGGTCAGGCAGTGTCTCCAAGAAGTTTATCTGCGATGATGGCATCACAATCGTAAATTTTCGGCTAATTCCAGACAGCCCAGACTATGTAGTCTTCATCACTTCAACAGAGACAGTTTTCATATGGAGTGTAGCTGACGAGTCTATCTGCAGAAGGGTGCAGCTACCAAGCAACTTCTTGAAGAATTTGGAAGACTTCCAAATCTCACCAAATGGGAAATTGGGAATTGTGTCTAAAGGAGATGAGAACATCAATGTCCTAGACTTGCACAGCGGCAAACTTCGCCTTGTCCATGCTGCTGGCATAATATGGAGGCAGAAGCTGTCACGAGATGGACGGTACTTGGTGTACATCTGTTTCCGCAActgtgatgaagatgatgatgcagGCGTTGTTTCCAGTTTGATCGTCATGCGACTCGCTGATGGGAAAAGCATCGGTACCTGTTCTCTCTACAAGACACCAACCTTCTTGTGCCTGTCACAACGAGCACTCAACATTATCGTCGGCTTTGAGGATGGTAGCATTGGGACTTACACAGTCGTGGACCGTGTGGATGCAGCCCTCAAAATCAAGATCGCCACCTCCAACAGCCGCCAGATCGTTAACAATGCCTCACAGAAAGTACGACCCAAGTGTAGCACCAATGCCTTCAAGACCATTGCTGATTGCGTGTGGAGGGAGTCCACTGAGGTCTTCTCTAGAGATAGCCCCATCAATGTCTCAGACAGTGGGGAACCAGAGACGACAACACCCACTAAAAAGACTGAAGTACTGCAGTGAGGTCGCCCTCCTCAGGATGGTAAGGGTACAGTATATGCGAATGGAAGAATATGTGGATGCAGTTGATTCTTGTTTACAGCAACCTTGCGACTAGTTCAGTTGCACAAATCAGTCCTCTGGGTTCCACACAGTTGTTACTACTGGCCAATTACTATCAAGCTGCACTCAGCCAAGCCACTTTCATTCTCTTGTCCCTCATCAGCTAATATGACACAGCATATTACATGTGCAATTTCTTTTTTCAACATAGAAATACTGCATAGATTTTTATATTGCTCTATCCATTCAGATGggctttatcatgttttttcttATATAAAAGAGTATAATACATTTCAGAtgcattgtttatttaaatcaagccataaagtttatttatacagaaatacatagtaatgttatatatttttagccaTAAACAACATTTGACATGTGCTGccattgtttctttgtttttgtaaagTTCAGTCATATCTTTTTTTCCTTAATGTCTTCTGAAActctataaaaaaatgaaacttgTGTACATGTGTACATATCTATTTTGGCTGCTGCAATTTGTGCAACTCTTTAACAATGTTATGTTGTGCTTAATGCAATCAAAGAGAGTGCCTGgattttaagaagttttttcttatacagtaaatactaaTGACTAAAAAGATGCAGGGAATTTGTAAAACAGAACTTGATCTTGATACTGATATACatcaatacaataaaacacactatGATGAACAAACAACGAATATCTAATTTGATTCATTCAAAACGTGCAGATCATCACAACattataattgttattatttcaGGAAACAATATTACAAAGGCTGTTTATAGTGTTACGTTGCTGAATTTATGGtgttaaactgaaaacaaggaTGAAAGAATGGACATTTTTGCAAGCTGAAAATGTTGCATATATTGGTAGTTGGATTAAACCATTACTGAGTATTGAACATttaagcattgtgtgtagcatCTCGCCAGGAGTATCTACGCCTTAAAAAGTGGTGTCATAAGTTATGCCATGTTttgtttgttgctgtttttcatGTCCCTAGTGAGGtgaagtgtgaatgtgtgataGTTGAAAATTAATACTTTGTATTTTCACGTAATATATGACTTACATagaaacatacaaatatacGCTATTGAAAATAAGATTGCAACAAGCAAGTTTTAGGGATTGCACTTTATTTTTGAGCAGTTGTTTACCACAGTTGGCTTAACTCAAATATTCATCTTCAAACTGGTGGTTCGGTATGGCCTGTGAAGATTTGCATTTTGCCTTCAGTTATGGGTTTATTCTGGCATGCATAACAAATTTACCAGTCATGCCCTGTTCAATCTCCTCCATAACTCTAAGGGCTATTCCGACAAATTGTATGTTTACCTCTGGAATTGTTGAGAAATAGGCCCATTTACAACTGCTAACCTGTAGCATTATTCAGGTTTGCTCAACTTCACCCCTCAAAGTGCAAATTTTCAAAACTCAGAAATATGATAATGTACTTTGCCAAAGTTTCCTTTCTTGTGTTAGCTGttcctttatataaaaaaataataatatgaattgTGTTATCATTTGTGACTTAATTGAATGCCATTTTTTTGGCTTTACTGTACCTCCCGGTGTGACTTACGTTAGTTATAATAGAAGAAATGTATTACCTTTGCTAAGAAGTTGAAGAAGACGTCCATATTGTATTGGAATGCTAGTTTTAGAGTATATCTGAATGTGTCACTATGAGAGCAGTACATGGTATATTGTACGTTATGTAACTCGAATGACTTTTAATTCTATTCATGTTTGCAAAACATAGTTGACATACTGGTaatgaatgtgtttattgtattctttGTATAGTCAGGACTGAAATCCCTGTTTagagatttatatattttcataaatgTTGTACTTACATTTTGTTACAAAGTTGTtttcaaaaaagaagaaaaaacttaTGTCTGAAGCAATATGAACTAGTGTGTATGCATTGtttgtattaaacattttaatgtaataa

Function

GO: NA

KEGG:

id description
K24734 NWD; NACHT domain- and WD repeat-containing protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU198108 lncRNA downstream 34708 34428998 ~ 34430757 (-) True G146396
TU198106 lncRNA downstream 81752 34376721 ~ 34383713 (-) True G146395
TU198105 lncRNA downstream 217756 34230032 ~ 34247709 (-) False LOC103031173
TU198098 lncRNA downstream 242628 34217738 ~ 34222837 (-) False G146390
TU198146 lncRNA upstream 80513 34637216 ~ 34637432 (-) True G146431
TU198149 lncRNA upstream 113734 34670437 ~ 34670847 (-) True G146434
TU198296 lncRNA upstream 484812 35041515 ~ 35055812 (-) True LOC111194386
TU198302 lncRNA upstream 484812 35041515 ~ 35055812 (-) False LOC111194386
TU198303 lncRNA upstream 484812 35041515 ~ 35055812 (-) False LOC111194386
XM_007242046.3 mRNA downstream 7052 34432831 ~ 34458413 (-) True LOC103030854
XM_022678438.1 mRNA downstream 88795 34229922 ~ 34376670 (-) False LOC103031173
XM_007242048.3 mRNA downstream 94404 34229920 ~ 34371061 (-) False LOC103031173
XM_007242047.3 mRNA downstream 94406 34229920 ~ 34371059 (-) True LOC103031173
XM_015603985.2 mRNA downstream 94407 34229922 ~ 34371058 (-) False LOC103031173
XM_007242045.3 mRNA upstream 342101 34898804 ~ 34943657 (-) True LOC103030319
XM_007242042.3 mRNA upstream 538547 35095250 ~ 35112113 (-) True LOC103029676
XM_007242040.3 mRNA upstream 734465 35291168 ~ 35390551 (-) True LOC103029051
XM_007242038.3 mRNA upstream 849623 35406326 ~ 35435707 (-) True hspa12b
XM_022678447.1 mRNA upstream 929216 35485919 ~ 35490358 (-) True nagk
XR_001518498.2 other downstream 680044 33785095 ~ 33785421 (-) True LOC107197333
TU197806 other downstream 1359878 33100297 ~ 33105587 (-) True G146175
trnae-uuc_21 other downstream 2408597 32056797 ~ 32056868 (-) True trnae-uuc_21
TU197580 other downstream 2584674 31872862 ~ 31880791 (-) False cckar
XR_002651049.1 other downstream 2907004 31550529 ~ 31558461 (-) False LOC103035326
TU198346 other upstream 866262 35422965 ~ 35431920 (-) False hspa12b
TU198348 other upstream 906494 35463197 ~ 35479194 (-) True G146584
TU198491 other upstream 1326906 35883609 ~ 35884321 (-) True G146686
XR_002651059.1 other upstream 2570712 37127415 ~ 37192500 (-) False poln
TU199053 other upstream 2795375 37352078 ~ 37391735 (-) True G147092

Expression Profile