RNA id: XM_007248002.3


Basic Information

Item Value
RNA id XM_007248002.3
length 4769
RNA type mRNA
GC content 0.44
exon number 10
gene id rbpj
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 31773504 ~ 31859657 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gtgggtttACTTTTCACTGTGAGGAATGTTTGAGAGCAAGAGTTTGTCAGTTACCATGAATTATGAAAGACAgactgttttggtttatttgagctgtgtgtgtgtgtgtgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcacttgtgCGCTTGTGAACATGCTCTTTAACAATAATTCTCCATGCTCAGGCGGTTTCTCAGGTGTTTTGTGTGCATGCACTTGctcagtgtttgtgtttgtggtgtggtTAGTTGTGAACCTCTCTCatgctcattctctctctctctctctctctctctctcttctgcccTCTCTTCACAGGAAGTTTGGGGAGCGCCCTCAACCACAGCGCCTAACGAGAGAAGCAATGCGGAACTATCTGAAGGAGCGAGGAGACCAAACCGTTCTGATCCTGCACGCCAAGGTTGCACAGAAATCCTACGGCAACGAGAAAAGGTTCTTCTGTCCTCCTCCGTGTGTGTATCTGATGGGCTGTGGCtggaagaagaagagggagcagatggagagagatggcTGTTCGGAGCAGGAGTCTCAGCCCTGCGCCTTCATTGGCATCGGCAACAGTGACCAGGAGATGCAACAGCTTAACCTGGAGGGAAAGAACTATTGCACCGCCAAAACATTGTACATATCGGACTCAGACAAGCGCAAGCACTTCATGCTGTCCGTACGCATGCTGTACGGCAACAGCGCCAACATCGGAGTCTTCCTCAGCAAACGCATCAAGGTCATCTCCAAGCCTTCCAAAAAGAAGCAGTCGCTCAAGAATGCTGACTTGTGTATAGCGTCAGGAACAAAAGTGGCGCTGTTCAACAGACTGCGCTCTCAGACGGTCAGCACGCGCTATCTACATGTGGAGGGAGGGAACTTCCATGCCAGCTCACAGCAGTGGGGAGCCTTCTATATTCACCTGTtggaTGATGAGGAGTCAGAGGGTGAGGAGTTCACTGTGCGGGATGGTTATATCCACTACGGCCAAACCGTCAAACTCGTCTGCTCCGTCACGGGAATGGCCCTGCCTCGACTGATCATCCGCAAGGTGGATAAACAGACAGCCTTGTTGGATGCGGACGACCCCGTGTCTCAGCTCCATAAGTGTGCCTTCTACCTAAAGGACACGGAGAGGATGTACCTGTGCCTTTCCCAAGAGAGGATCATCCAATTTCAAGCCACTCCATGCCCAAAGGAACCAAATAAAGAGATGATCAACGACGGCGCCTCTTGGACAATCATCAGCACGGATAAAGCAGAATACACGTTTTATGAGGGAATGGGTCCGGTCCAGTCATCTGTCACACCTGTGCCTGTGGTAGAGAGCTTACAGCTGAATGGTGGAGGTGATGTAGCAATGCTGGAGCTAACAGGACAGAACTTCGCACCAAACCTGCGAGTGTGGTTTGGAGATGTGGAAGCAGAAACTATGTACAGGTGTGGCGAGAGCATGTTGTGTGTAGTTCCGGACATTTCAGCGTTCCGCGAGGGATGGCGGTGGGTAAGGCAGCCCGTGCAGGTTCCGGTGACGCTGGTACGGAATGACGGGATCATCTACTCCACCACGCTGACCTTCACGTACACGCCAGAGCCGGGGCCCAGACCCCACTGCAGCGCGGCAGGGGCCATCCTGCGCTCCGGCAGCAGCGACCTGCTGGCCACCAGCAGGAGCGGCGTGGGGGGGAACGCAGACACAGCCGTCTACGGCACCAACAGCACGCCAAACTCCGTCACAGCATCGTCCTCCAACGCCACAGCCGCCGTGGTGTCATAACGTACACGGGAACACTTTACAGAACTCGAAATGTGGAAACAAAttaccaacaacaacaacaaaaaagagacTACGagacttttgttttttataaaagtgCTGCATATTGATTTCAAATCCGGAAACATTTGACAAAGAAAAGATGGAATGACTGAATTACAGAATACCAAGACTAAAGATGAAGGGAAAAGTCGGAGGGGAATTTTTGACTTGTATGCCtttgtgcgtgcgtgtgtgtgtgtgtgtggaatggtGCTTTGTGGGATGGAcacaaaagccaaaaaaaaaaagaggcaagaAGCACCTGCACCCGTCAACACGACACAGGAAATGAGGAGCAACCCACAGCAACGACACACCAGCCCtgtacaataaaaacacacaaaaacaacgCGGTTTAAGAAAGAAGTTCCTAAAGTTTTCCCCTCTCACCTGAGCTTCTTCCTTTCTTGCCCTCAGTCCTGGGTGGTGTGTGTCATTGCCTGTGGGTAGAAGATTCGTGGACCCATGATGTGGACACGTGTGAGGAGGGATCACGTCCAAATTGTAAGAGTTACATATAGTTTTTATGGACCAACGTTATTGTATAAGCTTTAGTAATGGTACATTTTTCTCCATACCTTTTTTGTATCAAAACATAATATAGTATGCTTTTGTTACCAAATAGATTCTGTTCCTATTCTGagctttttacacttttttttttgttttgtttgtttttaattattaatttgattGATGTTACTTTCTAGGGTTGTTTGGATGAGGTTTTTGGGTAGGGATGGGGCCTGGGCCTTCGTCTGGCTTTTGTATAAAGCTTCTTTCATCTCTTCTCTTCAGCGAACAGCTGCTTTTCACCTTTTTGGGCGGACTTCTGAAAAACACTTCCGTTTTTGAtacttttccatttttaaaacaaaacttttacctttctttgtttcttttttctgtgttttttttttcgctttgGGAAAAAAACTCAGAgggtctgtttttatttttttttatacacaaagTCTttgaaaagaacaaaacaaaaaagctttAAGCAACGCCTCTGCCTTGCCTGCAATATGATTGAATATGTGAATATGCTCCCTTTAAGGATTTTGTACCGTGTGCaagtgtggatgtgtgtgagtgtgagagtctTCAAAGCGCAAAAAAGAACAGCGCCATCTTGTCCTCCTctcttccttaaaaaaaaaaaaacacaacaagaaaaaaataaaaaaatggtgaatCCAGACACCACCACTCGCAATACTGAGGCCTACAGTAGGTTTTACATCAACTAGTTCACTCATCGAATCCAAACAGTAGCCATAGGTTAGAGTCAGTAGTAGTGTACAGTTCTAGCAAAGAACAAACAGAGAGTATGCCACATATCTGTGATCTGTAGTGTTCGTAATtgtcacaattttttttcttcgaATAGAAATTGCTGCGGTTCCTGCAAATGTTTTTCAAGCTCATTTTGTCTTCCTACACTTCCGAATTGTTTTGTTACAAAAACGACTGAACTATTCCACTGGATCAAGTCATATCCTTCATTAGACGTGGCCTTACTGTAACACCGTGGTTTTAGAGTGCAGTTCACGCCTTACAAACATGGCCTGTGAACTATGAGCTCTTAAGCTCAGCctagtatagttttttttttttaagattaagaCACACCCTTAAATTTAATATGTTGTCAGATTTCATTTGATGAACATTGAAATGTTTTGCTCTCATATGAACATACCCAAAGATATTGTGATACATGGCTGTACATTCTGTTTTTTGTACGTTTTGAAGAGTGTGTTGGCACCCGTGGCCTCTTATCCACCAAAAGTAGGGAGCTTTATCACATCAGTGTAttgatttttgtttctttgatttttccttTCTCGTGGCcttgctaacacactaatgtatATCCAGAATTATCAGTGGCAACTAGGAGTGACTAACAAATCAGCCTGCTCTAGtagttttgtaatattttgtaatattttctttttttggtctTTCCTTTGTACAGTAATTTAACTTGTAAGGACCATCAGTATGCttccttttgtttattttaataatttttttttaaaaccctcTTCCCCTCTGAATCTAGCAGCTTCCTGTGGTATTTCTTGTCAGTgcagtttggtgtgtgtgtgtatgcgtgcgGTGTCCAAATTTGTCACTTCCTCTCCTGTATAGCTTATCTGTCTATATCGTCCTAATAGTAATGGACAAGGGACTAAAGACATGTCCACTTGATGATGAACTCAATGGCCTTTAGATGCGTGTTTTGTCTTTCAAAGATATATGCATACAGCAATATTGTATAGGTCACGTTCTGTGTCTTGGTCTGTGGGTAATAACCACTGATTTTCACCAGCCTGATCCACGTTTTTGTGGCTATGATGAACAGCACACTCGTCTTGAGTCGAATTAACTTTGCTTCACGCTCCaccactttaaaaaagaaaaaagaaaagaagaaacaaaaaagtgatttatctacaatttttggtttattatttttggATTTATGTTTAGAAGAACAAAAGCAACCACCCTGCCATGATCAGGCCTGACCTTGAATCGGACTTTCTTGAAGGCCGAGGACAGTCAGTGAGAACCATTTGTGGAGCTCCAGCTTCCTTCGTTTACATCACTGCTTGTAAacacaaataagtaaaaatcaTGCCAAGCCAGCATCAACGAAACGCTCAAGAAAAAAGTCGGTGGTTGATGGACAGATGCTTCAGAATGGACAGTCTTCAGTCTTCAGACAGTCTTCCTTGCTGACTGGATCTGTCATTGATAGTGATGTGGTTGAACAATTCAACAaggcaatattttattgttttgtttttctttttttaaagaatgggTGTCATGAGTGCACTTCCCGGGAAAACTGTAATTTGAATATTTGTATGTCGTGAGTAATAATCTTCAGTAACCCCCCTCC

Function

GO:

id name namespace
GO:0007507 heart development biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0001756 somitogenesis biological_process
GO:0003140 determination of left/right asymmetry in lateral mesoderm biological_process
GO:0002040 sprouting angiogenesis biological_process
GO:0072149 glomerular visceral epithelial cell fate commitment biological_process
GO:0039021 pronephric glomerulus development biological_process
GO:0039022 pronephric duct development biological_process
GO:0030325 adrenal gland development biological_process
GO:0022008 neurogenesis biological_process
GO:0060840 artery development biological_process
GO:0005634 nucleus cellular_component
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function

KEGG:

id description
K06053 RBPSUH, RBPJK; recombining binding protein suppressor of hairless

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU197527 lncRNA upstream 9837 31788945 ~ 31807910 (+) False G145974
TU197520 lncRNA upstream 60080 31757097 ~ 31757667 (+) True G145969
TU197514 lncRNA upstream 77955 31736796 ~ 31739792 (+) True G145966
TU197539 lncRNA downstream 66037 31925694 ~ 31926398 (+) False tbc1d19
TU197602 lncRNA downstream 148069 32007726 ~ 32012637 (+) True G146034
TU197644 lncRNA downstream 210266 32069923 ~ 32070179 (+) True G146047
TU197646 lncRNA downstream 211657 32071314 ~ 32071563 (+) True trnae-uuc_22
TU197650 lncRNA downstream 216323 32075980 ~ 32076196 (+) True G146053
XM_007248004.3 mRNA upstream 98696 31717142 ~ 31719051 (+) True smim20
XM_007248006.3 mRNA upstream 109792 31684228 ~ 31707955 (+) True LOC103032447
XM_007248008.3 mRNA upstream 147618 31666799 ~ 31670129 (+) True LOC103032972
XM_007248012.3 mRNA upstream 198215 31597479 ~ 31619532 (+) True acox3
XM_007248000.3 mRNA downstream 32869 31892526 ~ 31926550 (+) True tbc1d19
XM_007247999.3 mRNA downstream 75066 31934723 ~ 32002483 (+) True stim2
XM_022678434.1 mRNA downstream 1020033 32879690 ~ 33104229 (+) False pcdh7
XM_007242058.3 mRNA downstream 1020034 32879691 ~ 33104229 (+) True pcdh7
XM_007242059.3 mRNA downstream 1020034 32879691 ~ 33104229 (+) False pcdh7
TU197207 other upstream 463303 31352296 ~ 31354444 (+) True G145748
TU197164 other upstream 595413 31197218 ~ 31222334 (+) True G145711
TU197121 other upstream 687724 31073973 ~ 31130023 (+) False LOC103044823
TU197029 other upstream 902935 30911857 ~ 30914812 (+) False LOC103022860
TU196945 other upstream 1145560 30668799 ~ 30672187 (+) True G145543
trnae-uuc_22 other downstream 211698 32071355 ~ 32071426 (+) False trnae-uuc_22
TU197717 other downstream 752468 32612125 ~ 32612562 (+) True G146104
TU198225 other downstream 3540166 35399823 ~ 35402380 (+) False cct7
TU198654 other downstream 4631855 36491512 ~ 36494457 (+) True G146805
XR_454044.3 other downstream 4831036 36690693 ~ 36719287 (+) True acap1

Expression Profile