RNA id: XM_007248008.3


Basic Information

Item Value
RNA id XM_007248008.3
length 1421
RNA type mRNA
GC content 0.43
exon number 6
gene id LOC103032972
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 31666799 ~ 31670129 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTGACTGGGCGTCTTCCTGTCTCAGAATCCTGCCTAAGTAGGCAGCATGGTGTACAATTCGGACACGGCCTCAGCCTCTAGtttgttagttaggttagcggGCTTAACGAAGTTAACTAGGTCTTTGTTAGCTGTTTGGTTTTACCTGAACGTTGTTTGTCGGAGTTGTAGCTTAGTAAACCACCGTTCTACCTCCACAAACCCGAAGAGACAGCAAAAAATGGAGTCCAAGAAATTAAAGCAGCCCAAGGCACCAAAATCTGAGGTGAAAGCCCCTCTTCGTCGATGGGAAGAAGCGGAAGACGAGGATTTCTGTAACCCCGACAAACTGCTTGTGTGTCCCTACGACCCAAACCACCAGATCCGCGCCTGTCGCTTCCCTTACCATCTCCTCAAGTGCAAGAAGAACCATCCTGAATTGGCCAATCAACTGTGGACGTGCCCATTCAATGCCCGTCACCTCATGCCCAAGCATGAGTTATCCCATCACATGTCGAACTGTGTGGACAGGTGCTCTGTGAGTGCTGACTATGtggaAAGTGCTGAGACACAGCGCAAATTTCAGGTACCTGTCAATAACTGGACAACCCCGGAGTGTGATGAAGATTGGGACCAAGAGGAAGAGGAGACAGTAGTCCCGGCAACACCATTTGTCTGGGGATTGTCAACCTCGCAACTTGGACAAGAAAGGTCTGAACCAACTGTGACCAACAGTTTGTCCTCCAGTCTCAGAGCACCAAGAGTTTTTCCTTGGAAACTGGACAAGTGAAGAATGTTATTTCCTCTAAAGCACTGTTGGTGAACATGTTCatcttattttgagtttaatttACAACACACTGAATCTTTTATTGACGACCCAAGTCCAAGAGAATCACTCAGAATGACTCAGAATAGCTTTCAGACTGGGTTTCAGAATGTTTAAAGGTGTGTCAGTTAAGTTAGTTTTTGGTTTGGCCTGTGAGATTGTGTCAAACAAAAGAGAAGGATGCAAGCAGGATCTAAGAGCAGTTAACTGTGACCTCTAGTACATTGTCATGGGTTGCTTTTGTGTTTCAAGTGCCAGGATGTTTTCATACTTCTCAGTTTTCAATTGATGacgtttacaaaaaaaactgtatgatTCTGAAGCCTTACTGACATTTTACGTGCACTTACTGATGCTAGCCTTTGGTTAATGTTTTGTGGCCTGGACTTCTATGTACCGTTAGTTTAACTTAAATTAAGAACATATTTAGGCTGCATAAAAATTGTGACAACTTACCAAGTTTGTAGACAGTAGCAGCATCACTTTGGCATGTCTTCTTCAGAAAAGCAATTGTTTCCTCCTTGATCTTTTCTTGGTTCAGGTTAAAGATTGTTCTATCCTCGTCTTTCAAAAAAATTTCCTCTGatctgttataaaaaaaaaaaaaacagag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU197377 lncRNA upstream 16914 31648526 ~ 31649885 (+) True G145875
XR_002651051.1 lncRNA upstream 33874 31627040 ~ 31632925 (+) False LOC111194381
XR_002651052.1 lncRNA upstream 33874 31630143 ~ 31632925 (+) False LOC111194381
TU197370 lncRNA upstream 36058 31629258 ~ 31630741 (+) True LOC111194381
TU197371 lncRNA upstream 36058 31629258 ~ 31630741 (+) False LOC111194381
TU197509 lncRNA downstream 47056 31717185 ~ 31719051 (+) False smim20
TU197514 lncRNA downstream 66667 31736796 ~ 31739792 (+) True G145966
TU197516 lncRNA downstream 66667 31736796 ~ 31739792 (+) False G145966
TU197517 lncRNA downstream 66667 31736796 ~ 31739792 (+) False G145966
TU197519 lncRNA downstream 68653 31738782 ~ 31739107 (+) True G145968
XM_007248011.3 mRNA upstream 47267 31597346 ~ 31619532 (+) False acox3
XM_007248012.3 mRNA upstream 47267 31597479 ~ 31619532 (+) True acox3
XM_022678419.1 mRNA upstream 47267 31599152 ~ 31619532 (+) False acox3
XM_022678417.1 mRNA upstream 81826 31572241 ~ 31584973 (+) True man2b2
XM_007248015.3 mRNA upstream 81826 31573610 ~ 31584973 (+) False man2b2
XM_007248006.3 mRNA downstream 14099 31684228 ~ 31707955 (+) True LOC103032447
XM_007248004.3 mRNA downstream 47013 31717142 ~ 31719051 (+) True smim20
XM_007248003.3 mRNA downstream 103375 31773504 ~ 31859657 (+) False rbpj
XM_007248002.3 mRNA downstream 147618 31817747 ~ 31859657 (+) True rbpj
XM_007248000.3 mRNA downstream 222397 31892526 ~ 31926550 (+) True tbc1d19
TU197207 other upstream 312355 31352296 ~ 31354444 (+) True G145748
TU197164 other upstream 444465 31197218 ~ 31222334 (+) True G145711
TU197121 other upstream 536776 31073973 ~ 31130023 (+) False LOC103044823
TU197029 other upstream 751987 30911857 ~ 30914812 (+) False LOC103022860
TU196945 other upstream 994612 30668799 ~ 30672187 (+) True G145543
trnae-uuc_22 other downstream 401226 32071355 ~ 32071426 (+) False trnae-uuc_22
TU197717 other downstream 941996 32612125 ~ 32612562 (+) True G146104
TU198225 other downstream 3729694 35399823 ~ 35402380 (+) False cct7
TU198654 other downstream 4821383 36491512 ~ 36494457 (+) True G146805
XR_454044.3 other downstream 5020564 36690693 ~ 36719287 (+) True acap1

Expression Profile