RNA id: XM_007250154.3


Basic Information

Item Value
RNA id XM_007250154.3
length 1507
RNA type mRNA
GC content 0.41
exon number 2
gene id pop7
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 39845890 ~ 39848520 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ACAGAGACGGCTGTTTGAATGGCGATTTGCTCCACCGggtaacattttacatttacagctgTATGTCTGTGACTCACTGGTTGTTTTGCAGtcactattttactattttaaatacagacGTCCCTAAACACACGAGAGACAGACATCACTTCCGGTAAAAAGCTGGTAACACATCCGGCATCTTCTACAGTGAGGCGGTGTGACGAGCCCCCAGAGCAGAGCAGATTTAATCTCTGCTGATCCTCTTCAGAAGCCCCGAGATGGCAGATCCACGAAGTCAAGTCCCAGGTTCGGTGTCTCAGAACCCACTAGGTTTTTCAACACCTGAGGGCAACACTGTTGAGATGGACCCAGTGGAATACACCCTCCGCAAACGGCTGCCCAGAAAGCTGCCCAAGAGACGCAACGATGTATACATTAACATGAAGACCGACTTCAAGGCCCAGCTGGCCAGGTGTCAGAAACTGCTGGATGGCGGTGCTGGTCACAAGGAAATCTGCATCCACGGTCTGGGACTCGCCATTAACCGGGCCATTAACATCGCACTGCAGCTGCAGGCTTTCAGCCAGGGGGCACTGCAGCTGGCTGCGAACACCTCCACGGTAGAGCTAGTAGACGATCTGGAGCCAGAAGACCCAGATGAAGCTGGAGAGCCACTAACACGAACAAGGAACAACTCGGCCATCCACATTAAAGTGTTTTACCCCAATGCTTAGAAAGTTACAGCCAGCTACACAAgatcaaatattattaaataggGAAAGAAGGAAATCCATCACCATAGAGGGATAATCTGACCTTTAATTTCATTAATAGCTACTGAATGTTAAGACTTTTCAATTGAATCATTTGGGATTAAATTCTTAAATAATACATGGCTTGGATGTGCAGTTTAAGGacagtattaaaaatattttttgagagcctttacataatgtaaagatcagtaaaaacaaattctgtcaGCACTTTATTTGGCCAAAAAAGTTTTGAGATATGTTTAAGGGTGCGAAAGACTAATATTTCTAAAATGCAAATCAGTTTGTGtccctatatattttttgggttATTTTGCCAAGTGAAAGAACCTAGGAGTTGTTCACACATCTAAATTGGAATCAGTAAATCGATTAGCCCTGATATGAGAGAGCCTGGTATGGAAGTAGCTGACCCAATATTATATTCTACCCACTTGTCTTCTTATGGcactggaggagaacattagATCAGTGCTTTGATGTATGTCTGTGAAACTGCTCATGAGGTCATTCATATGTGTAGGTGTTTGATATTTTGATAAAACTTGAAGAAAATAGAACATTTTGTATTAATGTGCTGTCCACAAgtacaaaatattatttaaggtGCCTATGCATGTTGTATTGTCTGAAACAGTTTGTGTTCGTTTGTGAACATACTATGTTTTTAAGTCTTATTTTCATTGTTTGAGAAGcatattcagatttattttctgatgtatatttgtgtaaataaaacACTAACACAT

Function

GO:

id name namespace
GO:0008033 tRNA processing biological_process
GO:0090502 RNA phosphodiester bond hydrolysis, endonucleolytic biological_process
GO:0005634 nucleus cellular_component
GO:0004526 ribonuclease P activity molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K14527 RPP20, POP7; ribonuclease P/MRP protein subunit RPP20

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU199983 lncRNA downstream 68956 39771982 ~ 39776934 (-) True G147807
TU199887 lncRNA downstream 355699 39489370 ~ 39490191 (-) True G147714
TU199865 lncRNA downstream 457783 39382713 ~ 39388107 (-) True G147700
TU199866 lncRNA downstream 457783 39382713 ~ 39388107 (-) False G147700
TU199862 lncRNA downstream 522547 39322591 ~ 39323343 (-) True G147698
TU200066 lncRNA upstream 39669 39888189 ~ 39893258 (-) False G147869
TU200072 lncRNA upstream 39669 39888189 ~ 39893258 (-) True G147869
TU200073 lncRNA upstream 39669 39888189 ~ 39893258 (-) False G147869
TU200067 lncRNA upstream 41564 39890084 ~ 39893258 (-) False G147869
TU200084 lncRNA upstream 41597 39890117 ~ 39947430 (-) True G147872
XM_007250157.3 mRNA downstream 28127 39815907 ~ 39817763 (-) True ufsp1
XM_007250161.3 mRNA downstream 347656 39490561 ~ 39498234 (-) True tmem256
XM_022678551.1 mRNA downstream 361228 39467363 ~ 39484662 (-) True LOC103028039
XM_007250162.3 mRNA downstream 447896 39275642 ~ 39397994 (-) False fgf11
XM_007250163.2 mRNA downstream 601609 39198862 ~ 39244281 (-) True chrnb1
XM_022678559.1 mRNA upstream 936992 40785512 ~ 40792759 (-) True ankrd53
XM_022678558.1 mRNA upstream 936992 40785512 ~ 40792733 (-) False ankrd53
XM_015602604.2 mRNA upstream 975561 40824081 ~ 40833786 (-) True LOC103041524
XM_022678345.1 mRNA upstream 1060337 40908857 ~ 40909862 (-) True LOC111194366
XM_022678347.1 mRNA upstream 1171808 41020328 ~ 41023008 (-) True LOC111194367
TU200007 other downstream 24315 39820751 ~ 39821575 (-) True G147828
TU200005 other downstream 28290 39816718 ~ 39817600 (-) False ufsp1
TU199886 other downstream 347676 39491662 ~ 39498214 (-) False tmem256
TU199853 other downstream 447878 39265349 ~ 39398012 (-) True fgf11
TU199810 other downstream 722102 39117310 ~ 39123788 (-) False LOC103036465
trnan-guu_3 other upstream 763019 40611539 ~ 40611612 (-) True trnan-guu_3
trnan-guu_4 other upstream 763438 40611958 ~ 40612031 (-) True trnan-guu_4
trnan-guu_5 other upstream 763857 40612377 ~ 40612450 (-) True trnan-guu_5
trnan-guu_6 other upstream 764276 40612796 ~ 40612869 (-) True trnan-guu_6
trnan-guu_7 other upstream 764695 40613215 ~ 40613288 (-) True trnan-guu_7

Expression Profile