RNA id: XM_007250163.2


Basic Information

Item Value
RNA id XM_007250163.2
length 4448
RNA type mRNA
GC content 0.43
exon number 11
gene id chrnb1
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 39198862 ~ 39244281 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gttcaggagtTTACTCTAGGCCCACCTGGCACCCCTTCTCTGcccccgaacacacacacacatgctcgcGCGCAGTGGGAGCGTATGTGTGTTAACTGTGTTTTAGTGACCGGGTGTGACTCGTTGTGTGAATGTGAGTGAGTTGTGAGAGTTGTGATagtttgtgagtgtgagtgaaggGATAATGAAGGCTGTGGACTGGCTCACCCTGGTCTGCTGTGTGTTCGCCCTGGTGGGAACTGGAGGAGCCTCAGAAGCAGAGAATCAGCTGATGAAGAAACTTTTCTCCTCTTACAATGTCAAAGTGCGGCCAGCAGAAACGCCGCACAGCAAGGTGGTGGTGAGGGTTGGCATGACCCTGGCATCCTTTGTCAGCCTGAACATGAAAGATGAAGAAATGAACACCGTCGTAATCATGAACCTGGAGTGGAAGGATCACCGGTTGGCCTGGGATCCGAAACAGCATGACGGGATTGACGTAATGCGAATTCCCGCTGGAAAAGTGTGGCTGCCAGATATCGTTTTAATCAACAAcaACGATGGCGTGTTCCACGTGGCTCTACATGTTCATGTGCAGGCGTACAGTAATGGCAGAGTAACGTGGACTCCTCCAGCTCTTTACCGCAGCTCCTGTGGAGTTAAGgTGACGTATTTTCCGTTCGACTGGCAGAACTGCACCATGGTGTTCCGCTCGTACACGTACGACTCCTCAGAAGTGGATCTGCAGTACGCTCTGGACGAGAGAGGCAATGAGATCCGGGAGATCATCTATGACACAGGCTTCagtgAGAGCGGTGAGTGGCATATCCGCCACAAGCCTTCCAGAAAGAACGTAAAGAGAGAAGACCTGTATGAAGACATCACCTTCTACATCATCATCGAGCGGAAGCCCATGTACTACGTGGTCAACATCATCCTTCCCTGCATCCTCATCACTATCATTGCCATCTTCAACTTTTATCTTCCACCAGATGCTGgagagaagaTGGGTCTGTCCATCAACGTCCTCCTGACCCTCACTGTGTTTTTGCTGCTGCTGGCTGACAAAGTTCCCGAGACGTCTCTGGGTGTGCCCATCATCGTCAACTACCTGATGTTCACCATGATCCTGGTGACCTGCTCAGTCATCCTCAGCGTAGTGGTTTTAAACCTGCACCACCgctcacccaacacacaccaaatGCCTGTGTGGGTGCGGAAGATTTTCATCCACATGCTGCCTCCATATTTGGGTCTCCTGAGACCGAAGGTAGAGACGCCGCTGTCTCTGGAGAGACCGCCCAAGAAAGAGAATCCGAAAGCCATCAGCCGAGCAGCAGATGAATACTTCATCCGGAAGCCCAACACCTGTGTGCTCTTCCCCAAACCCAACAGGTACCAGCCAGACGGCCTGTGCACTGACCTGCGTAAGTTTATTGATGGCCCCAGTCACTTCCTGACTCTGCCTCCGGAACTGAAGTCTGCTGTGAAGGCGATCTGCTACATAGCGGAGCAGCTACAGGCTGAGAAAGACTATGAAGCTCTAAAAGAAGACTGGCAGTACGTTGCCATGGTGGTCGATCGCCTCTTCCTCTGGATCTTCGTCATATTCACCACTGTCGGTACACTGGCTATTTTTGCTAAAGCCAGTTTCAACGCCACACCAAGTGACCCATTCATGAGCTCTTGATCTTAGAGGTCATAGCTCTGATCTCTGACTTTTGAACACCGGAGCATGGCTGGGCAGTGCAGTTGTGGTACGCATTGCTGGTCTTTGAAGTGAAtgttaatgttctttttcatgTTCTTGTGTTGTTTACTGTAGATAGAGAGTGTTGGAGTGTGATGATTCTGCGCTATGAACATTTATTTCGGGGGGAATGTCACtttgatgttttaaataaagctcctgTTTATGAAAGGTAACACAGAAGCTGCGTTTCAAAGTTTAGGCTACAGTTGAAATGCAGTGAGCTGCATTTCTCAGACACTGTGTCATAGAAGGCTGTTCCAAACTGAAGGGCCCTTTATGCTATATACAGCTGAAAAATGTAGTCGAAGTTCGGAGTGAGCACAATTTGATGAACACAATTTATGTTTCCTTTGTGGTCTTTTGTAACTTGCAACTCACAACGCCATAGGGGAAAAAGGAACAACAGcaccataaaaatatattcaaatgattaaaaataaagtttcaagagcagagatattattaaaatgtaaagaaatgaaaaagcaCACAATCTATATAGTATCTAACTTTCTATCAGATTCCTTAATCAGATTTCtgacttattttctttatttactctAAGAAATCAGAGTATGTGTTTGATTAGattattaccgtattttttgcactataaggtgcacttaaaatcctttaattttcccaaaaatcgtcagtgcaccttataatcaggtgTGAATTTTACCAATCAGGTTATAGAGAGCAGTAAAGCCGCTCCGCTAAATTACAGCGTTATATAGgactttcagtttagttctccagagactcaagactggagtattagcattagcattacctgctaaccatgctaagagcaaagttcattttaaaaggtgttaaaatcatttaaaatcacAGGTTTTGTGGCTTTTGCGTTTTGGAACATTCACACATGACCATCCTCATTTGGCTGACAGCAGACTACTGATGAGTCTTCATAGGACTACAGCCTAGGTTTTTCTAGTGTATCTAACCACTAGGTAATTTTTGCAGGTTATTGATATTCTGTATTAAGTTGAATCCAGCAACTTCACCAGAGTGCATACATGTGAGAGACACCTGTTGGCTTTGCTTACTGTTTGTTTTCTAGCTAAGATCAGAGAGGGGGAGAATCAAAGGCAGTGGGACAGCCCATCTGTTGTCAGTATGTGATCCCTGTGACTGTTTCAGCAATGCGACCTCCTGCTCTCTAATCTAGTACAGCCGGCTTTCTGCACCACCATGCTACTGTACTGGCCTCCGCTCAGTACAGCTGGAAGTCACTGTCAACCAAGGGCATAACAGACCCTTCAGCTCAACAGTGCTAGCATGACTTACAGTGAGAATTACCAGTAGAATAAGCTACAGTATCATTCTgtcattactttactttattggTCTTTGGTTGATTGCAAATgccaagctttaaaaaaaaaatagtaaattaaaatgtataggTATGTATACACCCCTTATCCTTAGTCCTCGTCATTCTTTTTGGGACACAAAGCCATATATGGTGTATATAAACCAATCAGCCAGAACATTAACACCATCTGGCTAATATTTTGTATGGAATCCACATAACCTCTGAAGTTGCCTTGTTGTATCTGGCATGTTTGCAGCAAATCATTCTTTCAAGTCTTTGTAAATGAGTCCTGCTAAAAATTGCACTAATTAACCCTAGGTGCCCATGACCCTGACACTGGTTCACCTCTCCTCCATTTGTCTTCAACCACTTTAGTAAGGtcctgaccactgcacaaaacCCTCACAAGACCTGCctaatgttttggagatgttctaaCCCCAGTCGTCTAACAATAAAACATAAGTGGCTTCTGCTTGCACTTTATGTAATACACCATCTtcaactgactgttcacttacTGCCTATTATATCCACACCTTGATTGATGCTACTGTAGATATACAATGGTTTTTACTTCCGGTCAGTagtgctaatgttatggctgatctttccattaaaatagaaaaaagaagtTAAAAGTAGCCCTTTGTTGTTTGAAGATATGGGTATATAAGGTACACAAACATCataccaacagtaaaacatgatggtggtagtgtgatggtgtgtggatGCTTTGTTTGGATCCTTAGTGATTTAACTCTTCTAATTACGCTCTATAGAGGGTATGTGTTGACGTCACATTCCTGCCTGGACAGTGGACACGCCCCCTTTAGCTTGACTCAGTGGCAAAACATTCTGTAACAAACTGGCAATGGAACAAATGATTGAGttcaaattaaagttaggtGAGCTCAAAAGTGGTTCATCTAAAGAATCAAGAAACCAATAGTCAGTGAACATCAATATGTGGCCAGAGATCAGGCCTTCCTGTCAGTTTTAGGTACCTGATTTCAGGTTGAAATGTCATATACACACCCGCTATACCAAACAAAAATCATACAGAGGAATGCCCAGCCTACTTCTAAAcgaataacagaaaaaaagagaatagaTTCAGTTTCAGAGTGACAGTCAATTTCCCATCATGGTGAACTTAAATTGGCAGTTCATGCTTGAAAGCCCATCAGAGTGGCTGATTTAAGGCAATTCTGCAGAGGTGAGTGGGCCAGACGTCTTCTGGCTAAAGAAACATTTATTTCATTGAACCCTTTTTAAATGTGACATAACCAGTTATTAAGTTTAGGAGGGCAACTTTCTTTTCTCAAATctttttcaataaaataaagtggccatttaaAAATT

Function

GO:

id name namespace
GO:0007271 synaptic transmission, cholinergic biological_process
GO:0006811 ion transport biological_process
GO:0045211 postsynaptic membrane cellular_component
GO:0005892 acetylcholine-gated channel complex cellular_component
GO:0030054 cell junction cellular_component
GO:0015464 acetylcholine receptor activity molecular_function

KEGG:

id description
K04812 CHRNB1; nicotinic acetylcholine receptor beta-1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU199792 lncRNA downstream 47681 39149092 ~ 39151181 (-) True G147645
TU199790 lncRNA downstream 56885 39139021 ~ 39141977 (-) True G147643
TU199797 lncRNA downstream 96648 39078300 ~ 39102214 (-) True G147649
TU199761 lncRNA downstream 148480 39041618 ~ 39050382 (-) False LOC103038564
TU199779 lncRNA downstream 173145 39023013 ~ 39025717 (-) True G147637
TU199786 lncRNA upstream 5534 39249815 ~ 39250697 (-) False LOC103028345
TU199852 lncRNA upstream 15616 39259897 ~ 39260652 (-) True G147691
TU199855 lncRNA upstream 18544 39262825 ~ 39265172 (-) True G147693
TU199862 lncRNA upstream 78310 39322591 ~ 39323343 (-) True G147698
TU199865 lncRNA upstream 138432 39382713 ~ 39388107 (-) True G147700
XM_022678550.1 mRNA downstream 3663 39172624 ~ 39195199 (-) False LOC103034907
XM_022678549.1 mRNA downstream 5467 39157149 ~ 39193395 (-) False LOC103034907
XM_007250164.3 mRNA downstream 5467 39172624 ~ 39193395 (-) True LOC103034907
XM_007250165.3 mRNA downstream 37155 39153237 ~ 39161707 (-) True LOC103035548
XM_007250166.3 mRNA downstream 61683 39126899 ~ 39137179 (-) True LOC103036164
XM_007250162.3 mRNA upstream 31361 39275642 ~ 39397994 (-) False fgf11
XM_022678551.1 mRNA upstream 223082 39467363 ~ 39484662 (-) True LOC103028039
XM_007250161.3 mRNA upstream 246280 39490561 ~ 39498234 (-) True tmem256
XM_007250157.3 mRNA upstream 571626 39815907 ~ 39817763 (-) True ufsp1
XM_007250154.3 mRNA upstream 601609 39845890 ~ 39848520 (-) True pop7
TU199810 other downstream 75074 39117310 ~ 39123788 (-) False LOC103036465
TU199804 other downstream 85246 39111254 ~ 39113616 (-) False LOC103036951
TU199801 other downstream 93948 39100098 ~ 39104914 (-) True G147652
TU199785 other downstream 164679 39029998 ~ 39034183 (-) True LOC103028345
XR_002651067.1 other downstream 181230 39014002 ~ 39017632 (-) True LOC103039602
TU199853 other upstream 21068 39265349 ~ 39398012 (-) True fgf11
TU199886 other upstream 247381 39491662 ~ 39498214 (-) False tmem256
TU200005 other upstream 572437 39816718 ~ 39817600 (-) False ufsp1
TU200007 other upstream 576470 39820751 ~ 39821575 (-) True G147828
trnan-guu_3 other upstream 1367258 40611539 ~ 40611612 (-) True trnan-guu_3

Expression Profile