RNA id: XM_007250192.2


Basic Information

Item Value
RNA id XM_007250192.2
length 1790
RNA type mRNA
GC content 0.46
exon number 12
gene id LOC103043213
representative False

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 38828677 ~ 38845998 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGGCATCCGAAATCGGGCGGTGATTGGTTGGAGCAGTGCCGCTCTCGTCCAATCAGCGCGTGTGTGCGGTATTTGGATGCACGCTTGATTTATTGCTCATTAAAGTCAGGAGCGAGTGAGGAAAGACGATGCCTTTTACGAGAGGAAAGAAACCCACTGTCAGCAAGATCCCAAAGCTGCAGGCCAGGAGCTCAGAGAATCAGGAGGATGGCCTTCAGGTCAAGCGATCAACCTCGCCTCCTCAAGGAGCTCCCAGGAAAAGGACAGCATTTATTGACATCACTAATgcTCACAAGCTCAAACTGAGCAATCCTATCAAGAAGAAAGGTCAAGTTAAGCGGGTGCCAAAGAAGACCTCAGTTGCTACCAACAATGAAGCCAACAGAAAAAgTTCAGCCTTGGTTGACTCTGAGTGTCAGTCTGAGGAGCTGGAGAAGGAAGCGTTCCCGGCAGAGAAACCGGAGGAGCCCCTTCCAAAGGATCCTCTCCCACCACACCTGCTCCCTCCACAGATACCTGTAGAGTTTGATATTGACTCTGATCCTGCCAACGACTGTACGCAGACGCCAGAATATGCCAAAGAGATCTTCGATTACCTAAAGAACAGAGAGgagaagTTTGTATTGAAGGATTACATGGACAGTCAGCTGAGCCTGAATCAGAATATGAGGGCTATTCTAGTGGACTGGCTTGTAGAGGTGCAGGAAAATTTTGAGCTGAACCATGAGACTCTTTACCTGGCAGTGAAGATGACTGACCATTACCTGGCTGTGTCTCAGGCCAGCAGAGAATCCCTACAGCTCATCGGCTCCACGGCTATGCTGCTCGCCTGCAAGTTTGagGAGCGGCTCCCACCTTGTGTTGATGACTTCTTGTATATCTGTGATGATGCGTACAAGCGCTCACAGATCATCACCATGGAGGGGACTATTCTGCAGGCGCTGAACTTTGACATTAACATTCCTGTTCCCTACCGCTTCCTGCGTCGCTACGCCAAGtgtgtgaatgCTGGGATGGACACGCTGACCCTGGCTCGGTTTGTGTGTGAGCTCAGTCTGATGGAGATGCAGTTCGTCCCGGTCCGAGCATCTTTACTGGCCTCCGCTTGCCTGCTCATAGCCCTGGTAACCAAGGACCTGGGGGGATGGACCCCGTGCCTAGAGTTCCACTCAGGCTACAACACAGAAGACCTGGCGCCCGTGGCCCGAAAACTCCAGCACATGCTGAGCCGGACGCCCGACAGCAAGCTCGCCACAATCCGGAGCAAGTACTCCCACAAGGTTTTCTTTGAAGTCGCTCTGATGCCTACTGTGACCTCGGAGAAGCTGGAGATGTTTTTGAagtgaaggagaaaaaaaaaaagatgtgtaaTCTATAAACcatgtaaatatttgtatttaatattgtatattgctcctgttttaaaataaattctagTTCTGTTCTGTGGTTACAAAATGAGCCTTGGAGTATTTcaaatgcagtttttagaagagttttttgaaccaaaaaaaaaaagtgtaacatCAGTGCAACAAATGTGAAagacaaatatatatgttacaGAAATGTTATCTTTATGCTGCACTGTGTTAACATACTTCTGCGAAGTTGTTTAAGAagactttaaataatgttcttAAATTCAATATTAAACCATGTTATTAAACCATGTATTTCTTACGTAtgtaaataaaacaaccatgttttGGGTTGGATGTCTTTTGCAAGgctttattaatgtaattttttattgctggcatttaattaaaatgtttttcttatgttta

Function

GO:

id name namespace
GO:0010389 regulation of G2/M transition of mitotic cell cycle biological_process
GO:0000079 regulation of cyclin-dependent protein serine/threonine kinase activity biological_process
GO:0051301 cell division biological_process
GO:0005634 nucleus cellular_component
GO:0019901 protein kinase binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002650995.1 lncRNA downstream 77320 38747818 ~ 38751357 (-) True LOC111194220
TU199607 lncRNA downstream 146999 38639308 ~ 38681678 (-) True G147514
TU199598 lncRNA downstream 199567 38628400 ~ 38629110 (-) True G147506
TU199595 lncRNA downstream 209979 38618151 ~ 38618698 (-) True G147503
TU199592 lncRNA downstream 211620 38616803 ~ 38617057 (-) True G147500
TU199756 lncRNA upstream 80389 38926385 ~ 38926799 (-) True G147629
TU199774 lncRNA upstream 160991 39006987 ~ 39012368 (-) False LOC103040134
TU199779 lncRNA upstream 177017 39023013 ~ 39025717 (-) True G147637
TU199761 lncRNA upstream 195622 39041618 ~ 39050382 (-) False LOC103038564
TU199797 lncRNA upstream 232304 39078300 ~ 39102214 (-) True G147649
XM_022678541.1 mRNA downstream 218785 38408844 ~ 38609892 (-) False LOC103044140
XM_022678542.1 mRNA downstream 219245 38408844 ~ 38609432 (-) True LOC103044140
XM_022678538.1 mRNA downstream 425418 38352738 ~ 38403259 (-) False LOC103028652
XM_007250187.3 mRNA upstream 81530 38927526 ~ 38961503 (-) True LOC103041964
XM_022678544.1 mRNA upstream 117742 38963738 ~ 38983217 (-) True LOC103042589
XM_022678545.1 mRNA upstream 117742 38963738 ~ 38978604 (-) False LOC103042589
XM_022678546.1 mRNA upstream 140016 38986012 ~ 38997741 (-) True sf1
XM_007250183.3 mRNA upstream 154099 39000095 ~ 39006229 (-) True LOC103040853
TU199421 other downstream 917804 37905765 ~ 37910873 (-) False LOC103047699
TU199360 other downstream 1101918 37723392 ~ 37726759 (-) False mrpl52
TU199299 other downstream 1314225 37508661 ~ 37514452 (-) True G147302
TU199053 other downstream 1436942 37352078 ~ 37391735 (-) True G147092
XR_002651059.1 other downstream 1636177 37127415 ~ 37192500 (-) False poln
XR_002651067.1 other upstream 168006 39014002 ~ 39017632 (-) True LOC103039602
TU199785 other upstream 184002 39029998 ~ 39034183 (-) True LOC103028345
TU199801 other upstream 254102 39100098 ~ 39104914 (-) True G147652
TU199804 other upstream 265258 39111254 ~ 39113616 (-) False LOC103036951
TU199810 other upstream 271314 39117310 ~ 39123788 (-) False LOC103036465

Expression Profile