RNA id: XM_015606051.2


Basic Information

Item Value
RNA id XM_015606051.2
length 3723
RNA type mRNA
GC content 0.54
exon number 16
gene id LOC103024124
representative False

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 37742557 ~ 37766960 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AAGTTCGAGCGATCGGAGAGCTGAGGGGGAGGCAAAATGGCGGAGCTCGAAGATGTTACGCTGGACGGGAAACCGCTTCACTCGCTCCGTGTGGCGGATCTGAAAGCTGCGCTGGAGCAGCGAGGCCTCGCGAAAAGCGGGCAAAAAACCGCGCTTATAAAGCGCCTGAAAGGGgctCTCATGTTGGAAAACCTACAGAGGACATCCACGCCTCACTCTGGGCTACAGCCCAACTCACAGATTGGGGAGGAAATGAGCCAGAACAGCTTCATCAAACAGTATTTGGCCAAACAACAAGAGCTCCTCCGACAGAGAATGGAGAGAGAAGCACGAGAAGCAGCTGAGGCAGATGATACAGACAGCCCTACAGGCCCTGATGAGGATGATCATTCGGAGGCCAATGATGATTCCTTCCTGCCAGAAAAGCATCACATTGTAGCATCACGCCCCCCTCTGTCCCGAGCAGAAGAGGATGAGGGAGGGGATCGTGGAGGAGGGTTACCGCAGGATCCAGGTTTACCTGGAGCTCGTAGGCTGGATGTGGGCTCAGCAGCAGTAGCCCAGGAACCCACTGATGCCTCCAGTGGAAGGATCTGGCGGCCCTCCTTCTCACAAGAAGACGTTGCCACTCCCTCTCCTCCACGAGCAGTTGCCTCTCTTTCAGTCCGTGTGATTGGTCAGCCAGAGCGGCAGGGACTCGTTGTGCACAGACCACAAGAAAGAGAAGGGACTGCCCCTGTTGAAGCAGGTCCTGCCCATTCAATGCCACAGCTAAGTCAGTCTGCTCGAATGCAGGAGGAGAGTGacgaagatgaagacgaagatgatgatgacagtgatgaagatgatgagtGGGGCCCTTCGTCTCAAAGAAGAAGGAATATCCGTGCTCCCCCTGTGCACAATCTTTCAGCATCAACTGCACAACGCTCCAGACGCAAGCTTCAGCCCCCTCAGCACATCCCTCCTCCACCACAGCCTGCACACCATTCTCCCCTGCAACTTCGTCAGCCAACACCACCACCGTCTCCACCCCCCGAACTCTCCTTTCCCCTGCCAGACACCCCAAAGCAAAGCCCCCCAGACCAGGATGAACCAGCAGCTCCAGGAGAAGGTGCTGCAGCTGGATTGCATGactcttcttctcctccatcTCTGCAGAGGCAAGAGTCCACCTCCAGCTCCAGATCCAGCAGCCCAGAGCCGCCATCTCAGCGCAGACCTGGACCGCTCAGCCTTCTGGTGCGCAAGATGGAGTCTGAAGGAGTTTTTGACAAAGGGCAGAAAAAGgaagatgaggaagatggaGATGGAGCAGTGAAGATGACTGAACAAAAGGATGCAAAGGCAGAAGATCAGAAAACAGGGCAACAGAAGACAGAAGGTGGGTTGGGTGGGCCTGCTGATGATCATGCCACTAGTGGTCCAGTGTTTTCGTCTGGTCAGCAGGATTCAGCACAAGAGGAGTTGCCCCAAGAGTCTGAACCAGCAGCTTCTGTGGTCCCTACCGCTGAATACAGTGATCTGGAGCCAAAGACTGTTAccgaggagaagaagaaggaggaaggaagacccgagaaacatgaaaaaggaaaaaaagaaagagaagaactgAGAGAGGAGAGGGAAAAAGACATCGAGAAGGagccagaaaagaaaaaggacaGCATCCATTCTTCATCAAAATGCCAAAGTGAGGTATCCCCCAATCAAGGCTCCTCCCGCTTCCGCCATGTTTCGCCCACCACATCTCCACCTGCAGTTACTAAGCGACCACGGATGTTCTCTGAGGTTCCCCCACCTGAATGCCTCCTGTCCCCTTCAAAACCAGAACAGGTGTCTGTACTTGTATCCGGACCACAACATGCTGATGTAGATGTCGCCATGGAGACTGAGGAGTCTGCAGCGCCTGAGTCCACACCCGAGAAAGTGAATGACCAAGAAAAGAAGCTCCAGGCAGAAACAGACAAACCAGCATCTCCACAAGCAGGTAAAGCAGTAGCAGACACTGGAAAGGCTCCTTCTGTGCTTCCTTTATCTCCACCTTCGGAAGAAGGGGAAGCTGAGAGAGTCAAGGAAAAACcaagaaggagagaaaaaaacactgagcgACACTCCTCCTCCAGTCACTCTTCATCTTCTGAGTCCGACTCAGAATCCTCCTCCTCCAGTTCTTCAGGCTCTTCGTCACGGGACAAATCCATCCCACCCAGTAAAAAGAAGGACGAAGTGGGAAGAACATCAAAACCAGTTGAGACAGAAAAGGagacaaaaaaatcttacagGGATGTGAAGCAGGCTGCTGTTGCTGAGCCCACAGGCCCTGTTGCTATGGAGCTTGAGGAACGCCCTGAGTCACAGAGCGCACTGGCTCAACCTGCCCCACAGGGGGCACCAGAGACTGCGGAGTCACGCCCTGATGAGAGCACCACTACAAAAGCGTTCGCAGCACGCAAGATTTCTCTTACTAgtaCTAAGCCAGAAGGAGCATCGCTGACTGAGACAGAGTCTGGTGGTGCAGCCAGTAGGAAGAGGAGGTGGGGCTCCAGCACAGCCGTCACTGCCAAGAAGCCATCGATTAGCATCACTACCGAATCACTGAAGTCTCTGATTCCAGACATTAAGCCACTTCAGGAGGCTGTGGTGGAGCTGCATCCAGATGAAGGGCGTTTCTCTGGGGACGAGGACTCCAGCCAGCAGGCTGACCGTGAGGAAGACCAGGGGCTTAAGATTAGACGTACTGTAACACAGattGTTCCATCTGAAGGACAAGAGAATGGACAAAAGGAAAAggaagatgatgaagatgaggaagaggaggaggtggaggagcgcAAACAGACAGAAGCAGAGAAGGAAAAACCCCACAGGAATCAGAGGAGGGAGAGTGTGTCGGAAGCTGCAATGGAAACACAAGGAGAACCCAAGAAAgTGACCCCTAATGATTCTGTGGTGCGGCGCTCTATCAGTCAGCAGAAAGTGTCCGTTACTATTGATGACCCTGTTCGCACAGGCCGGCAGCTCTCCCCTCCTCGTGGCAAAATTTCCAACGTTATTCACGTATGCAACCTGGTACGCCCCTTCACATTGGGCCAGCTGAAGGAGCTGCTGAATCGAACTGGTACCGTACTGGAGGAAGGCTTCTGGATAGACAAGATCAAATCCCACTGCTATGTCACTTACTCCAGTAAGGAGGAAGCTGTAGCAACTCGAGAGGCACTGCATGGGGTGAAGTGGCCATCTAGTAATCCCAAAGTGCTCAGGGTGGATTTCTGTGAACAGGACGAGttggaCTTCCATAAGGGTTTGCTGCCCGGAGATGACCCACGAGTCCAAGGACCAGGACCTGTACCACGTCCCGCTGCCCCTCCGCCTCTTATGCCTCCAGCACGGGAGCGAGAGAGGGAACGGGAGAGAGAGCGTGATAGTGGTCCACCGGTAGTGAGGGACCAGTGGGctgagagagagcgcgagatgGAGCGCAGAGAGAGAACGCGCTCAGAGCGGGAGTGGGACAGAGACAAGGTCCGAGATTTTGGCAGAGAAGATCGAGAAGCAGGCAGGAGGTCACGATCACGTGACCGGGACAGGCGACgcaaagagagagggaagagcaAAGAGAGGAAAGCGGAGAAAAAAAGATAAACCAGAGGAGCCTCCTGCCAAACTACTGGATGACCTGTTTCGCAAAACCAAAGCTGCTCCGTGTATATACTGGCTACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU199311 lncRNA downstream 136430 37596154 ~ 37607885 (-) True G147311
TU199326 lncRNA downstream 141393 37584618 ~ 37602922 (-) True G147320
TU199329 lncRNA downstream 142918 37584263 ~ 37601397 (-) True G147321
TU199312 lncRNA downstream 147324 37581627 ~ 37596991 (-) True G147312
TU199319 lncRNA downstream 179113 37562807 ~ 37565202 (-) True G147314
TU199386 lncRNA upstream 44638 37811598 ~ 37812345 (-) True G147359
TU199427 lncRNA upstream 73922 37840882 ~ 37849825 (-) False LOC111194363
TU199452 lncRNA upstream 236519 38003479 ~ 38009023 (-) True G147386
TU199459 lncRNA upstream 255095 38022055 ~ 38022505 (-) True G147390
TU199466 lncRNA upstream 274492 38041452 ~ 38041671 (-) True G147397
XM_022678504.1 mRNA downstream 17506 37723384 ~ 37726809 (-) True mrpl52
XM_022678503.1 mRNA downstream 58593 37674854 ~ 37685722 (-) False lrp10
XM_007250221.2 mRNA downstream 58593 37674854 ~ 37685722 (-) True lrp10
XM_022678502.1 mRNA downstream 58746 37674854 ~ 37685569 (-) False lrp10
XM_022678343.1 mRNA downstream 72285 37661676 ~ 37672030 (-) True LOC111194362
XM_007250215.3 mRNA upstream 3857 37770817 ~ 37787820 (-) True LOC103023814
XM_022678510.1 mRNA upstream 22145 37789105 ~ 37795277 (-) True LOC103023489
XM_022678509.1 mRNA upstream 22145 37789105 ~ 37792982 (-) False LOC103023489
XM_007250214.3 mRNA upstream 22145 37789105 ~ 37792981 (-) False LOC103023489
XM_022678512.1 mRNA upstream 22145 37789105 ~ 37792980 (-) False LOC103023489
TU199360 other downstream 17556 37723392 ~ 37726759 (-) False mrpl52
TU199299 other downstream 229863 37508661 ~ 37514452 (-) True G147302
TU199053 other downstream 352580 37352078 ~ 37391735 (-) True G147092
XR_002651059.1 other downstream 551815 37127415 ~ 37192500 (-) False poln
TU198491 other downstream 1859994 35883609 ~ 35884321 (-) True G146686
TU199421 other upstream 138805 37905765 ~ 37910873 (-) False LOC103047699
XR_002651067.1 other upstream 1247042 39014002 ~ 39017632 (-) True LOC103039602
TU199785 other upstream 1263038 39029998 ~ 39034183 (-) True LOC103028345
TU199801 other upstream 1333138 39100098 ~ 39104914 (-) True G147652
TU199804 other upstream 1344294 39111254 ~ 39113616 (-) False LOC103036951

Expression Profile