RNA id: XM_007250674.3


Basic Information

Item Value
RNA id XM_007250674.3
length 1810
RNA type mRNA
GC content 0.43
exon number 10
gene id LOC103030773
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 3585149 ~ 3598602 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ctaggaGAAAAAACAGAGCTCAGTGTTGAGGGAAGATCAGTATGAGCTTAGTTAGCTGCACGTAGGGAGATCATACGAGCTGTCTCTTAATATATAACGTTcacattattttacataaatagcTACAACTAGTTAACTAGATTAACTATATATTTTGGGTAGCATTAACGTTAAGCTTCTACCTGttctgatttaactatttaagtTACCTAATTAACGCTAACTCGACGTTTAGAGACGTTTTGTGTAACTTACTCTTACCTGGATACTCTGGGCATTGTCGTCGCGGTCACATCGCTGAGGAAGTGAACTGTAGTGGTACACCATGGCTTCAGCTGTTACCTCCATCGATCTCCAAACAAAAAATGCCTTTCCTAATCCCAATTACGGTCAAACACCAACTCCACCAGgctaTGTACCGCCCCAGGCTCCTGCAATGATGCCTGTCCCTCAGAGGCCAGTCGGCTGCCCCCCAGGACTGGAGTACCTGACCCAGATCGACCAGCTCCTCGTCCATCAGAAAATAGAGCTGGCTGAGGTTATTTTAGGCTGGGAGACCAATAATAAGTATCTGGTGAAGAACACACTGGGGCAGCAGGTGTTTTATGTGGCGGAGGAGAACGACTGCTGTACCAGACAGTGCTGTGGACCCATGCGCTCCTTCGTCCTCCATGTGCAGGACAACATGGGCCAGGAGGTGATGACCCTCACACGACCTCTGAGATGCGCTAGCTGCTGTTGCCCCTGCTGCCTGCAAGAGCTTGAGGTTCAGGCTCCTCCAGGAAACCCGATTGGATATGTGATTCAGAAGTGGCACCCGTTCTTACCCAAATTCATCGTACAGAACGAGAAGAGAGAGGATGTTCTGAGGATCCAGGGTCCGTTCTGTGCTTGTAACTGCTGTTCAGATGTGAATTTTGAGGTAATGTCCATGGATGAGAGCACACAGGTGGGCAGGATCTGTAAGCAGTGGACTGGAATGCTACAGGAAGCCTTCACAGATGCTGACAACTTCGGCATTAAGTTCCCCATGGACCTGGACGTGAAGATCAAGGCTGTTCTTTTCGGGGCCTTATTTCTCATTGACTTCATGTTCTTTGAGAACAGTAACAACAAACACTGAGTTAAAGCGGCTTTTATCAGTTCACCGCTCTGAAAAGAAAGGGAAGAGGAATCCACCAGGTTTCAGGATTTGCTGAAACGTTTTTGTAGTTTAATATTCACCATCACTCGATACTGATTGAgtttctcaatcctggtcctggtgACCCCcgctgccctgcacattttagaggtTTCCCTGCTTTATCTTATCCACTAACACTCTGAAAGTGCTTGTTTTAATGAGCTGATTTGTTAAGATCAAGGAAGAGGAGGTAACCAGAACCAGGACTGAGAAGCACTGTTACACACCAAAgactgattttaaaaatatttttttttgtacatttaatacaaatattcaatttatatattttatacatatttacatagcTTATTGAATCTTTATTTTTggttatattttactttcttcttTTCCACTTTAAATGtagatgtattttattataattattacctGTAGGTGGCACCAGAGTGCGACTTATTACCCAGCAGTCCAACTGCCCGCCATACCTCATATCTCCATAAGTAAAAACAGGTGAAGTAGCCTCTCTGAATCAGAGGTACAGCTGTGATTATTTCTGGTTTTAGAAAGCCTGAAAGTGCACTGCAGACCATATGTGTATTGGCTATATGACTGGATGTGCTTAAAATTGTTCTGTTATAGCAAGTAAATGTGTAACACTTCAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU187623 lncRNA upstream 859 3584018 ~ 3584290 (+) True G138642
TU187578 lncRNA upstream 58841 3524631 ~ 3526308 (+) True G138609
TU187558 lncRNA upstream 78204 3504576 ~ 3506945 (+) True G138593
TU187564 lncRNA upstream 90786 3492696 ~ 3494363 (+) True G138598
TU187486 lncRNA upstream 288767 3256901 ~ 3296382 (+) True G138534
TU187628 lncRNA downstream 3253 3601855 ~ 3602193 (+) True G138647
TU187651 lncRNA downstream 12591 3611193 ~ 3611402 (+) True G138658
TU187654 lncRNA downstream 65174 3663776 ~ 3664008 (+) True G138661
TU187656 lncRNA downstream 70760 3669362 ~ 3669576 (+) True G138663
TU187658 lncRNA downstream 83124 3681726 ~ 3681930 (+) True G138665
XM_007250671.2 mRNA upstream 4023 3571143 ~ 3581126 (+) True LOC103030036
XM_015606179.2 mRNA upstream 4023 3571143 ~ 3581126 (+) False LOC103030036
XM_007250673.2 mRNA upstream 4023 3571143 ~ 3581126 (+) False LOC103030036
XM_007250672.2 mRNA upstream 5212 3571143 ~ 3579937 (+) False LOC103030036
XM_007243178.3 mRNA upstream 16471 3554930 ~ 3568678 (+) False fubp1
XM_022677693.1 mRNA downstream 206185 3804787 ~ 3839372 (+) True LOC103047488
XM_022677694.1 mRNA downstream 302552 3901154 ~ 3942480 (+) True LOC103031935
XM_022677843.1 mRNA downstream 397340 3995942 ~ 4002916 (+) True LOC103021527
XM_007250680.3 mRNA downstream 423834 4022436 ~ 4046639 (+) True LOC103032574
XM_022677844.1 mRNA downstream 454128 4052730 ~ 4065474 (+) True LOC103033521
TU186618 other upstream 1560763 2022755 ~ 2024386 (+) True G137929
TU186579 other upstream 1746632 1835477 ~ 1838517 (+) False LOC103042893
XR_002650979.1 other upstream 1946894 1626955 ~ 1638255 (+) True LOC111194189
TU186490 other upstream 2085193 1497299 ~ 1499956 (+) False G137826
TU186409 other upstream 2545223 1037869 ~ 1039926 (+) False mrps14
TU187669 other downstream 203251 3801853 ~ 3815437 (+) False LOC103047488
TU187722 other downstream 234653 3833255 ~ 3834460 (+) True G138701
TU187723 other downstream 234653 3833255 ~ 3834460 (+) False G138701
TU187791 other downstream 497414 4096016 ~ 4102214 (+) False LOC111194271
TU187783 other downstream 567440 4166042 ~ 4171980 (+) False LOC103023077

Expression Profile