RNA id: XM_007250702.3


Basic Information

Item Value
RNA id XM_007250702.3
length 2666
RNA type mRNA
GC content 0.50
exon number 19
gene id LOC103039099
representative False

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 4738988 ~ 4748753 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATTAACTGTTATGCTTTAATTATTCCGCAAATAGGCCGCATTAAATCCGTCtgcagataataaaaaataaataaatgaagcagCCGGAAGTCGTACATCTGGCTTTCCGGACCTGACGTCAGCGGGTCGACTGTCAACATGAAAGATGGCGACCCATCACAGGCAGAACGCTGCGGGCCGGAGGAAAGTGCAGGTTTCTTATGTAATCAGAGATGAGGTGGAGAAGCACAATAGGAATGGGGTGAACGCTCTTCAGCTGGATCCGGCCCTGAACCGGCTCTTTACTGCTGGCAGGGATTCCATTATCAGGATATGGAGCATCAATCAGCACAAAcagGATCCCTACATAGCGTCCATGGAACATCACACTGACTGGGTGAATGATATAGTTCTCTGCTGTAATGGGAAGACATTGATATCAGCCTCGTCAGACACTACAGTTAAAGTCTGGAATGCACATAAAGGGTTCTGTATGTCAACATTAAGAACTCACAAGGACTACGTCAAAGCTTTGGCTTATGCTAAAGACAAGGAGTTGGTGGCGTCTGCGGGGCTGGACAGACAGATCTTCCTGTGGGATGTAAATACTCTAACAGCTCTGACTGCCTCCAATAACACCGTCACCACTTCCTCTCTGAGTGGGAATAAAGACTCTATCTACAGCCTGGCCATGAACCAGCTGGGGACCGTCATCGTCTCAGGCTCAACAGAGAAGGTCTTGAGGGTTTGGGATCCGCGGACATGTGCCAAGTTAATGAAGCTGAAAGGCCACACAGACAACGTGAagtctttattattaaacagagaCGGCACTCAGTGTTTGTCTGGTAGTTCGGATGGTACGATACGGCTGTGGTCTCTGGGCCAGCAGCGCTGTATCGCCACGTACCGGGTCCATGACGAGGGTGTGTGGGCCTTGCAGGCCAACGAGGCTTTCACACACATCTACTCCGGCGGCCGGGACCGCAAGATCTACTGCACTGACCTGCGCAACCCTGATATACGCGTGCTGATCTGTGAGGAGAAAGCCCCTGTTCTCAGAATGGAGCTGGACAGGTCAGCAGACCCCTCTCCTGCCATTTGGGTGTCGACTACTAAATCCTGTGTGAACAAATGGTCTCTAAAGGGAATGCATAACTTCAGAGCGTCCGGTGATTACGATAATGACTGCAGCGCCCCTCTGACGCCGCTCTGCACTCAGCCTGAACACGCCATTAAAGGTGGCGCCAGCATAATTCAGTGTCACATCCTCAATGACAAGAGGCACATCCTTACCAAAGACACCAACAACAACGTGGCATACTGGGATGTTCTTAAAGCATGTAAAGGGGAAGACCTCGGCAAAGTGGAATTTGACGAGGAGATAAAGAAGCGCTTCAAGATGGTCTACGTTCCAAACTGGTTCTCTGTAGACCTGAAAACAGGGATGCTGACCATCACTTTAGATGAGAGTGATTGCTTTGCTGCCTGGGTGTCTGCCAAAGATGCTGGTTTCACAAGCCCAGACGGCTCAGACCCAAAACTAAATCTAGGTGGTCTGCTGCTGCAGGCTTTGCTGGAGGTCTGGCCTCGAACACACATCAACCCCATGGAGGAAGAAGAGGGAGAGGTTAACCATGtaaatgGGGAGCAGGAGAGCAGGCTTCAGAAGGGCAATGGCTATTTCCAGGTGCCTCCACACACGCCGGTGATCTTCGGGGAGGCAGGGGGACGGACATTGTTCAGGTTATTGTGTCGAGACTCTGGAGGAGAAACGGAGTCAATGTTGCTGAATGAAACCGTGCCACAGTGGGTTATTGATATTACTGTAGATAAAAATATGCCCAAATTCAACAAGATCCCGTTCTATCTCCAGCCTCACTCGTCCTCTGGGGCAAAAACACTCAAGAAGGACCGCCTGTCCGCCAGCGACATGCTGCAGGTGAGGAAGGTGATGGAGCATGTCTACGAGAAGATCATCAACCTGGACACCGAGTCACAGACGACCAGCTCCTCCACCAACGAGAAACCTGGAGagcaggagaaggaggaggacgTGGCTATGCTGGCTGAGGAGAAGATCGAGCTCTTGTGCCAGGACCAGGTTTTGGATCCCAACATGGATCTGAGGACAGTGAAGCATTTTATCTGGAAAAGTGGTGGAGACCTGACCCTTCACTACAGGCAGAAGTCCACGTGAGACCGGCGCCAGAGTGTGACGTGAGAATCACGTGAACCTCCCATTTCCCTCCCAGCTCGCCTTATTCGTCTTCAGCCCATCTTCGCCCTGGCGTCCACAGGAGCGTCACGGAGGACAGGTTTTCTGCTCTCCCCTCAGCACCATTCCTCTCCTCGTGTTGTGGGTCATAGGAAACACAGAcaggactgactgactgaccgaCCGTGCTCAACTCGAACTGAATGAGTTGAGCTGAGATGATTCGCTTTGTACGGTATACTAATCTGGGACACTCTAattgtatttccttttttttttctcttttttttaagcagattttgttctttttgagGAAGTTTCCATTTCTCCTCTGAGGTTGTGACTGATGAGGCTTAGGATTTCCAGTTTTGGGGATTTTAGAGGATGATATAATGAAGGCTCCACAGAGACTTCGGGTCCagagatttttagattttaatttttgtgtTAATACATTCCAGAGAATGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU188186 lncRNA downstream 31463 4706213 ~ 4707525 (-) True G139011
TU188058 lncRNA downstream 317393 4420864 ~ 4421595 (-) True G138919
TU188049 lncRNA downstream 342056 4396090 ~ 4396932 (-) True G138913
TU188046 lncRNA downstream 387862 4332394 ~ 4351126 (-) True G138910
TU187924 lncRNA downstream 504806 4179824 ~ 4234182 (-) True G138837
XR_002651009.1 lncRNA upstream 3826 4752573 ~ 4754327 (-) True LOC111194275
TU188203 lncRNA upstream 72456 4821203 ~ 4838073 (-) True G139027
TU188206 lncRNA upstream 87035 4835782 ~ 4836531 (-) True G139029
TU188177 lncRNA upstream 90119 4838866 ~ 4854692 (-) True G139003
TU188222 lncRNA upstream 256745 5005492 ~ 5006291 (-) True G139043
XM_007250698.3 mRNA downstream 11460 4723386 ~ 4727528 (-) True LOC103038044
XM_007250696.3 mRNA downstream 193500 4530536 ~ 4545488 (-) True LOC103037397
XM_007250694.3 mRNA downstream 253003 4484233 ~ 4485985 (-) True LOC103036885
XM_022677866.1 mRNA downstream 263071 4459769 ~ 4475917 (-) True LOC103026217
XM_022677865.1 mRNA downstream 285619 4435813 ~ 4453369 (-) True LOC103025914
XM_007250705.3 mRNA upstream 13006 4761753 ~ 4767293 (-) True LOC103039917
XM_022677874.1 mRNA upstream 23046 4771793 ~ 4805667 (-) True LOC103027391
XM_022677884.1 mRNA upstream 282672 5031419 ~ 5045009 (-) False LOC103027706
XM_022677883.1 mRNA upstream 282672 5031419 ~ 5045009 (-) True LOC103027706
XM_022677888.1 mRNA upstream 818437 5567184 ~ 5598775 (-) False ccdc24
XR_002651007.1 other downstream 400791 4333133 ~ 4338197 (-) False LOC103034146
TU188021 other downstream 400894 4335991 ~ 4338094 (-) False LOC103034146
TU188022 other downstream 403099 4331650 ~ 4335889 (-) False LOC103034146
TU187750 other downstream 887306 3848000 ~ 3851682 (-) False LOC103047802
TU187730 other downstream 905318 3832721 ~ 3833670 (-) True G138708
TU188266 other upstream 527359 5276106 ~ 5276468 (-) True G139074
TU188315 other upstream 581331 5330078 ~ 5330805 (-) True G139105
TU188844 other upstream 1260306 6009053 ~ 6010867 (-) True G139489
XR_002651012.1 other upstream 1273862 6022609 ~ 6054339 (-) False LOC111194281
XR_002651013.1 other upstream 1371372 6120119 ~ 6124125 (-) True LOC103026010

Expression Profile