RNA id: XM_022678274.1


Basic Information

Item Value
RNA id XM_022678274.1
length 8232
RNA type mRNA
GC content 0.48
exon number 26
gene id LOC103028801
representative False

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 25243906 ~ 25324523 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gaggagCTGCGCGCGCCCTCGCCTGCACGCtcgcgctttctctctctctcgctcgcgaCATGTGAGCGCGGCTCCGCCACGAGCAGCTGAGAGACAGAGCAGCGCGGTTCTCACAGAGACACTCAGAGGATGTAGCGTTTCAGAGACTAACAGCACATTTCTGAGGGAAAACCACGAGCGAGCGGCCATGACCTCGGTGTGGAAGAGGCTCCAGCGGGTGGGGAAGAGGGCGACCAAGTTCCAGTTCGTGGCGTCTTTCTCCGAGCTGACGGTGGAGTGCACCAAAAAGTGGCAACCAGATAAACTGAGAGTGGTTTGGACGAGAAGAAACAGACGCATCTGCACGAAGCTTCATGGCTGGCAACCAGGCATCAAGAACCCCTACCGAGGGACGGTGGTGTGGCAGGTGCCTGAGAATGTGGAGATTACTGTCACACTCTTCAAGGACCCAAATGCTGAGGAATTTGAGGACAAAGATTGGACATTCATCATTGAAAATGAGACGAAGGGTCATCGGAAAGTTCTAGCCTCAGTGGATGTAAACATGAAGAAGTATGCTAATGCCAGTTCGGCCCAGTTCGACCTGGCACTGCAACTGAAGCCTCTGTCAGTGAAAGTGGTGGATGCCACGCTGAAGCTCACCCTGACATGTATTTTCCTCAAAGAGGGCAAGGCCACTGATGAGGACATGCAGAGCTTAGCCAGTCTAATGAGCCTCAAGCCTTCAGATATCGGAAACCTGGAGGACTTTAATGACAGTGACGAGGAAGACAAGAGGACAAGCACAGGAGCAAACATCAGCACTGCAGCAACAGCCTCTCATCCTTCTGTTAGAAGAGTTCATGATCAGGCATGGAGGCCTGCTTCAGGCACAAACCCATTTACCACAGTTCATTCTGAAACTGAATGGACGGGTTCATCGGTCACCGCTCCTAACCTTCGTCCTCCGCCCTCTCTCAATCCTTTCCTTCCACCTCTCCCACCTCCTCACATCCAAATGCCTCACCCTGCTGCCTCTGCCCAGCCTACACGCCCCTCCCCATACGCCTTCACCTTGCCAGCATTCGCCCGCGCCCATCCTCCTGCCCTGCCCAAAATCTTCCAGCCTGCAGAAGGCTCAGtgcctctctctctccagcgaAGGCCTTCTTGGGGCCAGGCTGACTCTAGTATGGAGGTCAGCTCTGCTGAGGAGGCTACACCATTATACCCGCGAACCCCCCCTTCTACTTTCCCCAGAcctcctcctttctctctctcctccttcacCTCTCAGCCTTCTTTTCTACCTGATAATGGTCAAACAGGAGTCCGGAAAATTCTCAGTTTCTCCTCTTTGCGTGCTCCTCCTTCTGACACCTGTCCTGCTACCTCTAGTCTTGGCTCCTCCCCTCCTGGTTCTATACCTCCTCCTGACCCATGCCCTATAAAAAGCTATCGTGCTTCTTTGGCTGAGCCAGGCTCCCCCCTCACCAGGCCCACCAGCATGCCCTCTGCTGCTGAGACAGCCTCTTGGCAGAGAGAGTGGAAGTCTCCTGAAGTGAAGCCCATTCTGTGTCCTGTTCCTACACACCTAGAAGAGCCTGTCTGTCATATGCCAGTTCAAAGCAGCCAGATACTTCGCCGGCCTGCATCCATTTCATCTCCCCCTGCTTTCGACCCTCCCCTTAAAAAAGTTGCTCCTCCTATGTATTCTACCCCTCCACCTAACACACCTTCCACACCgcttcctttgactttccccaCCCCTGATGGATCTGCCCAGCCAATGGAAGCTAAATATTCTACTGTAGCTCCTCCCAAACACCTACTGCCTATGCCATGTCCATCTGAGGTGGCCTCTGTACctacttttctttcttcttttcatcCTGCACCTCCTGAACCCCAGCCACATGCCCATTATTTCCCTGTTACCATCCCTCCTCCAGCTCTGGTTCCTTCCATCCCTCCTCTGTGTACTGGTGCTCCAATCCCTTCTCCAGCTGCTGGTGCTCCCATCCCTCCTCTGTGTACTGGTGCTCCAATCCCTCCTCCAGCTACTGGTCCTACCATCCCTCCTTTGGCTAAGGGTCCTCCTACCCCTCCTCCAGCTGCGGTTGCTCCCATCCCTCCTCCACCTGTGGTTGCTCCCATCACTCCTCAAGCTACTGTTGCATCTATCCCTCATCCAACCAATGTTGCTCCAATCCCTCCTCCAGCTACTGGTGCTCCCATCCCTCCTTTAGCTACTGGGGCTCCCATCCCTTCTCTGAGCACTGGTGCGCCCATCCCTCCTCCAGCTACTGGTCCTCCCATCCCTCCTCTAGCTACTTGTGCTCCCATCCCTCATCCAACCAATGTTGCTCCCATCCCTCCTCCAGCTACTGGTCCTCCCATCCCTCCTCCAGCTACTGTTGCTCCCATCCCTCCACCAGCTACTGGTCCTCCCATCCCTCCTCCAGCTACTATTGCTCCCAACCCTCCTCTGTGTACTGGTCCTCCCATCCCTCCTCCAACTACTGCTGCTCCCATCCCTCCACCAACTACTGGTTCTCCCATCCCTCCTCCAGCTACTGGTCCTCCCATCCCTCCTCCAACTACTGCTGCTCCCATCCCTCCACCAGCTATTGGTCCTCCCATCACTTCTCAGGCCGCTCCCATTCCTCAGCTTCCAGCGGTTGTTGCATCATCTCTGccctctccctcactcactcctgATATTTTGCCCTACCTCCCACCCCCTGTTTCTGCCCTGCCATCATCTGTCAACAGTTCTGGCCCTGCTGCtgcctgtgctgctgctgctgttgctcctGTGGTCACTCCATCTGCTGATTCTGAGACAGACCCTCTCCTTGGGGTTCAGACGTCGGAATGGAGGCACCAGGTTGTCCCCACTGTGGTTAGACCGAACGTACGCAGACCTGCAGCCCCCCTTAATGTGATTCCCCCTACCTCTCCTCCCTTTTCCATCTTCtccccttttctctctcctgtaccTCCTGTTTTTCCTGGTTCCCAACTTCTACCCAAAATGGCCATCCCTCCCCCTATTATTGGGCCCGTTCCTGAAGCTCCCCCTGACCCGTGTAAAGagGTGCATCGACAGTTGAGCATATTGACAGAAGAAGAATATCCCAGTGCAGGGAATAGCAGTGAGGAGAATACAAGCAGTAAAATTTCAAATGCTCACAAACCGTCATCACGAAAAGCTGGAGTCATCAGCATTGCCAGTCAGAGACCAGGAGACTCCAAAGATGAGCATCCATCGGTCACATCTGGCACGAGGAAACAGGATGGAGAGCCTGTCTTTGGACTGAAGATTGTGAAGCCAGCACCAGGGACTGAGAAACATAGAGCTCAAGAAGTGTCAACTTACGAGTTCCTCCAACCTGCAAGTGGCAAGTCACTGAGGGAGACCTTTTCTCTACCATCTCTGCGAAAACTTGAGGAGGCTGGTGATGATGAGAACCAGCCGGTACCACCACTGCATGTCCGAAAGAAGGACAGCCTTCAAGAGACACCTCAAACAGTAGCCGCCGATGACCAAGAACCCGTCACTCCTACAATTCCAACAGTTGTTCCCCCTTGTCGCAGTAAGAAACATACTGTTCCGATTGAGAAGTCTGGAATAGAAGGAAATCTTCAGATTGAAGAAGTCTCTGTTGTAAGAAATGTGTCCCAGAGCATTGAGGATGCTAATCCTAAATCTACCAATGAAGCTGAGCAGGTGGACAAAGGTGAACACAAGGATGTTGTTCTCAAACCTTCAGAAGAAAGCCCAGTCTCAAAAGAGGAAGATTCTGTAGCTAAAAACAATCCACCCGTTCCTGTTGATTTACCAGTCCCAGTTCCTCGAGCAAAGAAACGGCTTAGTGGTTCTTTCTTCGATAACCCAGACGTTTCTTTGGAAAGTGAAAAGGCTAAGACACAGGTGGCCACTGATGGAATTCTAGGATCTCCCAGTAAAGAGCTACCAGAACTAGTGTTTGTGTCTCCTCAGGAAAAAGACCATTCTTTGTTGTCTTCTCAAGATGAAGTGTTTCCAGCAGCCTTAACACGTGTTCCTCCCAAACGTAGGAAATCAAATAGAGGTGACTCTGAAAGACTCACAAGAGCAACCACTGATACCCAGACAAGTGAGgagcagacagacaaacaacagCCAATAACAACTAGCAGTGAAATCAAACCCACTGAAGAGAATTCAAGCCAGGCAAACATGACAGATCTTCTAGTCCCAGTGCCACGTTTGAAGAAACGAATCAGTGGTTCTTTAAATGCTGACATTCCAACTTCACCAACCTGCCCTTCGTACCTAACAGCAGAtacaaatacagacaaagagGTCCTTCAGGAGAACCAAAGTGACTTGAATTTACCTGTTCCAATTCCTCGTTCAAAGAAACGCCTCAGTGGAACCTTTATGGAGGAAATCTGTAGATCTGAGAAAGAGCAAAACGAGACTCCCCTGTTACCGAACAAAGAGGAAAATGTGGGAGACAAAGTGGAAAAAATTGAAGGCCTACCTGTTCCAATTCCTCGTTCAAAGAAGCGACTCAGTGGTTCCTTTATGGAGCAAACCTTGGTTTTTGAGCAAGGGCAAAAGGAAGAGACAGAACTGTCTCTAAACAAAGAGGAAAATGTGGTAGATAAAGGGGAAAAAGTGGAAGGCCTACCTGTTCCTATTCCTCGTTCAAAGAAGCGCCTCAGTGGTTCCTTTATGGAGGAAATCTCGGCCTCTgaacaagagaaaaaagaagagatatCCCTGTTACTGAACGAAGGCGAACATCAGGTAGATCTACCTGCTCTAGTCCCTCGTTCAAAGAAGCATCCCAGTGGCATCTTTATGGAGGGAATCAAGATTTCTGAGCAAGAGCATAAAGAAGAAACATCCCTGTTACTGAATGAAGGGGAAAAAGAGGTAGGCCTACCTGTTCCAGTTCCTCGTTCAAAGAAGCGTCTCAGTGCATCTTTCTCAGATGATAGCAACCCTGGAGACAAACAGACATCATCTTTAGTTTACGCAACTGAAAGCAAAGCTCTTCTAGAAGTGTCCTCGGACAGTATCCATGGGCATGAACAAAAGCAGAAAGAATCTTCTGACAACCTAAAAGatgaagaaaatgaaaataagaaaGTGGATACGATCTGTCCAGAACCTCCCTCCGATACTCATGAAGACAGCAGACAACTGGTTGAAGATGCTTTCGAAACTGCTATCTCAAGTGACTCTAGCATAATGACTTTACTAAATACTGGTGGTGTGAAAGACAAAGAGGAGGATATAGAACTAAACAAGAAGGAGAAAGGAGAGGATAAGGTTCCTTTGGGCTCGGTTTCTTTAGATGAGGCTGCTGTTGCCTTAGATTTGTCAAGGCAAGGAGCAGCTGAAGATTCTTCAGATCGACCTGTTCCAGTGTCTCGTGTAAAGAAACGTCTCAGCGGCTCATTCCGAGACAACACTGCAACTTCCACTAACGAGTCATCCCACCAGCAGGGGTCTTCTGGTCAGAATGTTCCTGAACCACTTGTGCCCGTTCGCAGCAAGAGGAAAACAGAGACCGAAGCCATTGGTCCTTTAGACAACAGTGCTTCAGCCAGTGACACAGAGGCAGTGAACCTTGTGGATTCAAGCCAGTCTCTCCTAGAGTGGTGCCAAAAGGTCACAGAAGGTTATAAAGGCGTAAGGATCACTAACTTCAGCACCTCGTGGCGAAATGGACTTGCTTTCTGTGCCATCTTGCATCATTTCTATCCTGATAAAGTagAGTATGAAATGTTGGATCCTTATGACatcaaaaagaacaacaaaaagGCTTTTGATGGCTTTGCTTCCCTGGGAATCTCCAGGCTGATGGAGTCCTCCGACATGGTGCTGCTGGCCGTACCTGACCGGCTCATTGTTATGACGTACCTTAACCAGATCCGGACGCACTTCACTGGCCAGGAGCTCAGTGTGGTGCAGATAGGAAAAAACATCAGCGAGTCCAGCTATGTGGTTGGGGAGAAGATACAGGAAGCGGACCCTGATGCTGCTGTTCGCTATTGTACTGAGAGACTGCAGAGTGGCTACGGCTCTCAAGAGACCAATGGGAATGTCTCTGATAAAGGGACAAAGGTGGATTCTGATACCAGTAAGAGTGTGGTGGCTCCACCTCGGACTAAGCGGACTCAAGGGCCGACTCAGGCAGGAGGCTCAGGAGGAGCCCAGGCACCAGTGGCCCCACCAAGGAGTCACACGGGATCCATCAAGGGCTTTTCTCATGTCAGAGACGCAGATCTGGTGAAAAAGCGAAGATCCCAGCTGAGAGGGGAGTCTTTTGACGAGGCTGAACTGTCTGAGAAAAGTACAGCAGCAGAGAGTCAGCCTTCAGCTCATGTTGAAAGTGAAGCATCCAAAGGACGATCAGCATCACCAGAAAACGTTGAGAGTGGTGAAGAAGGAACTGCAGCAGAAAGACAGgatgTGAGTCAGTATGTCCTGAGTGAGATACAGGCATTAGAGATGGAGCAGAGGCAGATAGATCAGAGGGCTGGTACTGTGGAGAGAAAACTACGAAGACTTCTGGAGTCTGGCAGTGACCGTGAGGAGgaagagaaattgattcaggaGTGGTTCACCCTGGTTAACAAGAAAAACGCCCTAATCAGGAGACAGGATCATCTCCAGCTACTGCAAGAGGAGCAGGATTTGGAGATAAAGTTTGAACTGCTAAAAAAGGAGCTTAGAGACCTTATGGCTGTAGAGGAATGGCAGAAGACACAGGCTCATAAAATCAGAGAGCAGTTGCTGCTGCAGGAACTTGTGGCTCTTGTTAACCAGAGAGATGAGCTGGTCCATGACATTGACGCCAAAGAGAGAGGGGCACTGGAAGAAGACGAGCGATTGGAGAGAGGTTTGGAGCAGAGACGCAGGAAGTACAGCAGTCGGAAAGAAAAGTGCCTTTTACAGTGAGGGAATGTGGATTTCTTCGTGAATAAGAAGTATAAGCAAGTGTAAAATGGTCAAAGATGGTGTTCTAATAGCTACTTCTTTGCACTGTGCCAAATTTGCAAACACTGCAAAGCAGAAAAGTGAGGGTGAAAATGCTGGATACTGCCTTCCAGAGAAAGAGGATGTTAAAGTAAAACAGAGAAACCACAGTGGAAGAATTCAGGGCCGAGGAGTGGATTGAAATGGCACGTTTTAATCCTGTTTTGTTAGTGCAAaacaagctgtattttaataGGTCATACACTGCCGTGTCTTTGTTCATTTGCAAGGAATTTTAGTCAAATCAGTTGGAGAGCAGTTCTTAAATGTTGAGACAATTTCAAGTTTGTACGTTTTTAAAAGTGGAAGATGAATTTTGAATTTTGCAGTTtaaatattgttacattttactcATAGAGTATGGAGTATACAGCTGAGGCCTTGCAGTGATTTAGCCTTATCGTTGTATCCTTGCTACAAAAGGAATTACCAAAGGAAAATCTTGCTAACTGTACACTTTAGTAGCATGGGTACAGTCAAAGAAGTGAAGTTTACTTGTTGTTGGTTGGAATTTCTTGATTCTGCTCATTGATTGGGCTTTCAAACAAGAAGTTGGCAAACCAAAGAGAAGCCCATCTACTAGTCGATGGTttcaaatacaataaataaatacatgcctTAACAATCTAAACCAGGTCTCAGGACCACCACCTTTGTTTGAGTAGTAGCTGTTTAGTGCACATACtgttataaagtatttattattacagttttggattgtatatgtttgtatgttggaatataaatacagaaatatgtttAAAGCCCCCATGTGACTAATAAACAGAAACtgtaacattttcattttatttcttactCTGTGTTTACCAAGATTTTACAAGCCATTACTACAGACTTGATGTgttgagtgaaaaaaaaaactgtggtgaCTCTTTCTGAGAAACCTCCACAGTAACAGtattatttttgaaatattcATGACAGGAAAACTAGAGGATTGGTTTAATATGGTTAATGTACTGTTGTGAGAATGTATGTGTTTctgattgttattattttattttaaggtatGGTATAGTCCTGGGTTTTTTATGTGTTCTCTGCACTGTCACCTGTTGTGTCTCATGTtgttaaattaacttttaaagTCTTGTTCACTGATGATGTTCTGCACATTTAGAATTGCACTATTCGTAAATCTGcttttgaaaataataaaaaagttgaaaaataaagattattttatgttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU195092 lncRNA upstream 14775 25227323 ~ 25229137 (+) True G144174
TU195086 lncRNA upstream 106426 25136738 ~ 25137486 (+) True G144170
TU195085 lncRNA upstream 115228 25128294 ~ 25128684 (+) True G144169
TU195078 lncRNA upstream 156429 25082638 ~ 25087483 (+) True G144164
TU195074 lncRNA upstream 163575 25076296 ~ 25080337 (+) True G144160
TU195246 lncRNA downstream 63574 25388097 ~ 25401731 (+) True G144278
TU195242 lncRNA downstream 120371 25444894 ~ 25446699 (+) True G144276
TU195243 lncRNA downstream 120371 25444894 ~ 25445729 (+) False G144276
TU195262 lncRNA downstream 178936 25503459 ~ 25503798 (+) True G144292
TU195263 lncRNA downstream 179362 25503885 ~ 25504135 (+) True G144293
XM_022678262.1 mRNA upstream 26003 25210589 ~ 25217909 (+) True taf6l
XM_007255701.3 mRNA upstream 33824 25207657 ~ 25210088 (+) True LOC103030689
XM_022678260.1 mRNA upstream 39001 25172038 ~ 25204911 (+) True mta2
XM_022678261.1 mRNA upstream 40842 25172038 ~ 25203070 (+) False mta2
XM_022678258.1 mRNA upstream 73509 25089838 ~ 25170403 (+) True eml3
XM_022678276.1 mRNA downstream 6752 25331275 ~ 25353142 (+) True LOC103046088
XM_007255690.3 mRNA downstream 30295 25354818 ~ 25368486 (+) True LOC103027853
XM_015607467.2 mRNA downstream 110047 25434570 ~ 25444547 (+) True rce1
XM_022678278.1 mRNA downstream 110052 25434575 ~ 25444547 (+) False rce1
XM_022678279.1 mRNA downstream 110858 25435381 ~ 25444547 (+) False rce1
TU195051 other upstream 239741 24998773 ~ 25004171 (+) True G144146
XR_002651001.1 other upstream 349359 24892992 ~ 24894553 (+) True LOC111194253
TU194997 other upstream 372163 24857006 ~ 24871749 (+) False LOC111188189
TU194884 other upstream 532379 24707083 ~ 24711533 (+) True G144017
TU194671 other upstream 1327830 23827948 ~ 23916082 (+) True G143836
TU195235 other downstream 51475 25375998 ~ 25378765 (+) True G144270
TU195258 other downstream 147600 25472123 ~ 25474694 (+) True G144290
TU195320 other downstream 328483 25653006 ~ 25654250 (+) True G144333
TU195371 other downstream 462214 25786737 ~ 25788842 (+) True G144372
TU195623 other downstream 1426312 26750835 ~ 26754442 (+) True G144584

Expression Profile