RNA id: XM_007255706.3


Basic Information

Item Value
RNA id XM_007255706.3
length 6327
RNA type mRNA
GC content 0.44
exon number 9
gene id LOC103032175
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 25007022 ~ 25037257 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ctctctctctctctctgtgaagcTGGTGTACCCGCCCTatttcaccaccaccacctcccaTCCTCCTCATCACAGTCGAGAGGCTTCACCTGCACGCTGATCTCTCAGCTCCGGCTCAGCTCTAGGGAAATAATAATCTGGTGAAGTTGGACAGTTCAGAAAGAGGACGGAGATCGTTTGTGAATCGTAGCTGCAGCCTGAATCGCAGAGCCCCGCAATTACAGCAGAAAGATGGCAGATCCGATTACACAGTCCGCTCAGATTTCGTCGTCGCAGGGACTAAACGATGGACACCCTGCAGCGTCCAAAGACTCAAAGTTTTCCGattcctttttttcctcttcgCCTGTATCTCTCATTCAGTCTCCTCAAGacaaaaggGTGGTACTGGGCTCTGACAAGCCTTCAGAGGGCGTGGCCACCTCACTTCGTTTTTCATCCCAGCCAAGTTCTTTTTCCCCTATGACTTATGGTAACGAATCGTCAGGACCACCTGGAGGAAACATAGATCGTAGTTTCCAAGAGAAAAGAGAGCTTTTTGAATCGTCACCTGGATCCCAAAACCAGGACACGTCCCCCATAAAGGTGTCCCCTGTGTCTGAGCGAATCAAAGCATTGGAAGCTCTGGCTGCGAAGCAGAATGATTCTGATTGGAGTGAAGGAGGATTTCCTCATTTCCGAGAACGCCATTATGAAAAGTCCCCTACGGAGATGCATGGGATCTCCTCTCGTTCATCCTTGAAGAAAAGAGCAACGTCCACTGAACAGGATTCGCCAGAATCGCCTTTTGAAATACTCGGCGAGGTCAGGCGTGGAAGCGACTTTGAGGATACTGCAGACTGGATGAGGGCCCACTTGCCGCCAGCACCTGATTTCAGTGCTGCTGATCCTGATTTTGATGAAATGCAAGAAGCTACTATTATACAAGAAAGCCCAACCAAAGAGATAAAAGGCAAAGAAACAGATGCAACGGTTCCTGAATCGTTTGTTGGTGTTCCTCATGAATTTATGGACATTCCCACAGAAGTAACCAAAAACATGGATGATGATACTAAACAGTCCAAGCAAGACAGCGTTGAAGAGGAGTCAGAATTTGATCTCAGATTTTTACCTACTGCTTATATGTGGGACAAACAAGAGAAACCTGACAGTGACGCACAAGCCCCATCAGATAATCCTGAAAATCCGGCATCTGAGATACCTGCATCTGTTGTATCCCCTGAACCTCCTACAGGCTTTGAATCTCCTTCCATGTCTTCTCCACATCCTGCTCCTCAGGAAGATTCAAGTGCAAAGCAGCCATCTGCCTCCCCAAGTGGTGGCACTGGGTCTGTAGAAATTCATGAAGTTGACAGCTCTGGTGAATCTGATGATATGGTTATTGAGGATGCAAGTGATGCCCTTCAGTCTGCTAGCACTGATGCTCCGGAAGCTGGACCATGTGTAGAGAAGTCCTCTTTTTCAGATGAATGTGGGAAACGTTCTGGGAATGTTCTGGTGCCCATCATTAATGTCATTGAGACAGAGGAGCAGAACATCATCAGTGATTATGAAGTGGAGCCGGATGaagatgacgatgatgatgatgatgataagtATGAGATAATGCGAGAGCCTACAAGACAAGTTTCAGTATCCTCTGAAAAACCATCAGAGGTTTCTGAAGAAAGATCTAAAGATGTTCTGAAAGAAGAAATTTCCTCACGAACAAATGTTGAAGATTTTGACACAGATTATTCTTCAAAGCACAAGATTGCCAAAGATGATGTTGGCGATGAGAGTTCCATCCAGACTTATAATGACTCAAAGGACCTCAGTTCTGAAGACTCGCAAAAGCAATCAGATGTGGCTCAGAATCTGGATGAGCCTTTTAGAGAGTTTTGCATGAATGATATTAAACCTGACAAGACTTCAGAAGTCACACCAGACCTTCCCCCAAATGATCAGGATCTGTCAAATGAGCTTGAGTCTAGTGACATAGATACATATCTGGACCATTATGCCAGTGAGGAGTTAGCTTTGAAAGACCAGCTACGTTCAGGCGTTTGTAATGATAATGTTGGGGAGTCGTTTGAAGTACTAAAATCCAACTCTCACCAATTTGACAATCAAAATAACTCTGTGTTTGCTCAGCAGTCAATTGACGAAGCTGCTGTTGATGAATTTGATGAGGAGCTTAATGACAGCAAACAAGCCTTTCTTAAGCCTGAGCCATCCCCTGTTGGCATTTCCACAGAAGTTCTTGTTGAATCTCAGCCTCCTCGAAATGAAACACCAGTTCCTGAATTAGTGGATCAACTTGACAACCTTGAGGATCAGAAGATTGTACATGCACCAGGAGATTTTTCTCTAGTGGAGGAGGATGATTACATGTCCCAGGTCATAGAGGAACTGTCCTCTGTTCAAGAGAATGCTCCTGCTCCTTTCCCTTCTTTCCATAATGATTCATCCGGCAAGATCAGTGAGGTAATCTCCGATTTTGTGACAATGGATGTGACGGAGGGATTAGTGATGACTAACTCTGACCATAATGATCTAGTCCAGTGTGAGGTTGCAGACAGGCAGTCACCAGAAGTCACAAGTGAGCCTGAGAACATTGAGCCAGAATGTTCtgagacagcagcaacagacAGTTTTGTGGAGTTCATGAGGGAGTGCTTGAAGTCTCGACAGGATGAGGAACCGGATAGTCTTGGTCTAGGACACAGCGGCAAGGGTCTTATGTCTGATGCTTCTTCTTCTCCTGCTATGATCATGGACCTTGAACAGGAGCGTCTTACCATCTCTGCACTCAAAGAGCTTGGAAGCAGCCAAGATGACGAGGATGAAACAAGCGTTTCTAACAAAACGACCGTGGTCTCTTCAAAGGAGGCTTCAAAACCTCTGCCTAAATCGGAGTCTTCCGTCGCCACACCTCAGCAACTTCCAAATGAGTATCAGCCTGACGTTTCGTTAGCCAAAGAGGTAGAGGCAATCGACATTTTGGTGGCAGAAGCCTACCACCTCGCAGAGCATGTCTTGACAGCAATACTAACCCACGTGTCAGtACATGATCTGGTGCACTGGCGGGACCCGAAGAAGACGGGCGTGGTCTTCGGCAcctccctgctgctgctgctgtctctgGCAGCCTTCAGCGTGATCAGCGTCATCTCCTACCTGCTCCTGGCTCTGCTCTGTGTCACCATCACCTTCCGCATTTACAAGTCAGTCGTCCAGGCCGTGCAGAAATCCAGTGAGGGACATCCCTTCAAGGCTCTGATGGAGAAGGATGTCAGCGTGCCTCCCGAGACGTTCCGCAAGCACGTGGACGCGTCGCTGACCTACATCAACCGCGCACTCAAGAAGATGAGCCGCCTGTTCCTGGTTGAAGACTTGGTGGATTCCCTCAAGTTGGCAGTGGCCATGTGGCTGCTGACATACGTGGGTGCAGTCTTCAATGGCATCACTATCCTCATTCTTGcgGACATCCTTATCTTCAGTGTACCGCCTTTGTATGAGAAGAACAAGACCCAGATAGACCACTACATTGATGTGGCACGCACTCAGATCAATGCTACAGTTGCCAAGCTACAAGAGAAGCTCCCTGGAGCAGCGAAGCGCAGTAAAGCGGAATGATCCACCTCTCGGATCCCTCCGTGACCACCCCATTGCCTCCAAGCCCCTCCCTGCATCCTCTCCTTTCTTCCCTTCTATCTTCCTGATCCTTCAGTTTAATCTtatccccctcccccctcctcctcttcctctcctcctcctccccagATACATCTCACCAACCATCTGCACTGAACCAGCTAGTCTCTAAGATCTCAGAAGCTTCTTGATAATCAATGTTAACTCTGCAGCTTAACTATAAGCATTAGGAGAAGATGCGTGGGGCTCCAGAGGCTGGCGACTCAAacacaggaagtgatgtaaTACTGCAACTGGATGCCCATATATGGTGCCCGTCTTTGGGCGGCAGGGTTTGTGAACTAGACTGAATCTTTGACCTGGTTTCCCGAGTGTCCGTAGGCGCTGTGCTATTAATAAAGTGAAATGTATGAGTACATAAGGATGAGGATTCGATGGCCTGTGCTTATGGGAACATATTCACAGGGCAAAAGGcaaacagtaaaagaaaaaaggacaggcagGCCTGCATGCTCTTTCTCCATCCTAGTTTCGTAGCTCTTCTTGCCCCCCAAGCCCcccttatctctctctttttttttttttttttttttcaccttaaaATATTTGCTCATGTATTATAAAACTATTAAACTGCAATGCACTGATTGTTACTAgtctctcacacagacacacacttacacagattgattgattgattgattgattggttttaGACGATTTGGTCTAGTTCGCTGTCCTGTCTcggtcttttttttgttcttttgttctctttctttctttttgcgCGTTTCAATTTTaattgtgtatgtatatatagtaaGATTACAAACAGGCTCTTTGCTGTGAAGAAGTAGTTAGccttgctttttatatttaaagaaaaaaaagaaccaatATCCTCTTGCGCCTCTTATTTGTCTCTTGCATCTGTCTGAGACTCGGATCTCCTGAGTTCATGTGCGTGCGTTATTCTGATTATTCCTGTTCAggttatgattatgattattattattattattattaggtcaCATGTAGGATAGCTGCTCTTGACTCCCCAGTCTGGCATTGGCATCTtaagtaaatattattataattattatgactattattactattgattattattattaattttaaggtTGAGTTATCTGTATAGAATCTTCAGAACTTCTGAATAGCCGAGACGTTGAGAAAGACgatgttgctgttttgaaggGACAGAAGAAGGAGTGTGATTGGTGTTGGAGGTTGGTGGGGAAAAGGTGTTCTCCCTGCTGATCGTGGACCAGTCTCCAAGCTAAACGCTGGTCCCGGATCAGTATTTGGAGAACTTTTCTAACACTCTGGGTGATTTTCTCGTGATTTAAAAAGTGGTCTGCATTGGTGTGTTGTAAGGTTCTTGTTCTTAATTTAAGGATGCAGAGCACATGTTGAAAAAGCTGgagatgtgtttttgtttgttacatGAGAAGGTGAGCAGACTTTATACAGTTGTGTGTAAGCATACACTGAAAGGGACTTTAGGACTAAAAATGGATGCACTAAGCTTACtgccctctgtgtgtgtgtgtaaatggcgCTGGATTCTACCTGGCCTTGCTCTAGAACCATCTGGAAGCATTTGCGTTCACCTTAATGAAGCACTAACCTAGGCTTCAGTATATGTATACCTGTATTTATATTGACTTACCAATGAATAAACACAGTACCAGAGTTAAACAGTAATACTACTACATAGATGTCTATCAACTGCTGAATGttacattgtaatatttatagaGCATTCCAGCTGACGCATGCAATCCTGTGTGTTCACAAAGGAACTCATTTCAGCCTGAACTTGCCTCACATGGAGTTTTCCCATAAAGGGTCAAGTTCACCGAACTTGGACTTTGATGGCCAAAACCAAATGCcagggtttttattttttccttcctcttttttttttgagtgtgtttgtatgtgtttctCCACCCCTTAAAAGTTCAACTGTAGTCAACGTTCCatttttgttcttcttttttttttctcgtacCCACGCTTTCTTCTATGCATGCGCGCAAATGGCACACTCAGACACGCTCACCAACGTCTTGAAAGTATCCTTTGTTCGTACCACTTGTGTCCTTGTGTTGCAGAACTAACATACATTATGTTGTCAACTCGTGGATCATAGGTGTGGTGATGCTTGAAGAAGTAGGATAAGCTCCAGCAGCTAGtttgaacatttttattctttctttttgttccaacactaatttaaagaaatacgacctgttttatttcttcttttgtttaattaataaatgcaaacctctctctctctctttctatgtaGACAGCTTctattgttttctcttttcaaCTAGTGTTTCGATTAAATAACCTGCAGATTTTTAACTTCTGTAGTTTAACAGCATGTTGCTCTTCTCCCCAATTTCTCACCTGTTTTTgagtttttctgtctctctattggGGAGGGAGATGCAGAGAAGTCCTGTTTATCCTTGGTTTTTGCTTTGGACTCTTGCTGATTTAGATGTGATAACTACTATCTACGTATGTTCAGTTTGTTAGTTATAATTAAGTTAATCTTGGGAGCTTTGGAAAATAAAGTGGAGGGAGAGGGGGGGGAAATGTGGTCCCTGTAATGATGtcaaagtgaaattaataaaaatgttaaatgat

Function

GO: NA

KEGG:

id description
K20723 RTN3; reticulon-3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU195043 lncRNA upstream 47834 24958711 ~ 24959188 (+) True G144139
TU195036 lncRNA upstream 70222 24936415 ~ 24936800 (+) True G144134
TU195034 lncRNA upstream 70642 24935825 ~ 24936380 (+) True G144132
TU195027 lncRNA upstream 89035 24917686 ~ 24917987 (+) True G144125
TU194996 lncRNA upstream 130285 24874314 ~ 24876737 (+) True LOC111188189
TU195074 lncRNA downstream 39039 25076296 ~ 25080337 (+) True G144160
TU195078 lncRNA downstream 45381 25082638 ~ 25087483 (+) True G144164
TU195085 lncRNA downstream 91037 25128294 ~ 25128684 (+) True G144169
TU195086 lncRNA downstream 99481 25136738 ~ 25137486 (+) True G144170
TU195092 lncRNA downstream 190066 25227323 ~ 25229137 (+) True G144174
XM_022678328.1 mRNA upstream 57622 24933371 ~ 24949400 (+) True LOC103047006
XM_022677676.1 mRNA upstream 95671 24895613 ~ 24911351 (+) True LOC103033974
XM_022678248.1 mRNA upstream 132796 24856772 ~ 24874226 (+) False LOC111188189
XM_007255705.3 mRNA downstream 14778 25052035 ~ 25073701 (+) False LOC103031648
XM_007255704.3 mRNA downstream 18179 25055436 ~ 25073701 (+) True LOC103031648
XM_022678259.1 mRNA downstream 52574 25089831 ~ 25170403 (+) False eml3
XM_022678258.1 mRNA downstream 52581 25089838 ~ 25170403 (+) True eml3
XM_022678260.1 mRNA downstream 134781 25172038 ~ 25204911 (+) True mta2
TU195051 other upstream 2851 24998773 ~ 25004171 (+) True G144146
XR_002651001.1 other upstream 112469 24892992 ~ 24894553 (+) True LOC111194253
TU194997 other upstream 135273 24857006 ~ 24871749 (+) False LOC111188189
TU194884 other upstream 295489 24707083 ~ 24711533 (+) True G144017
TU194671 other upstream 1090940 23827948 ~ 23916082 (+) True G143836
TU195235 other downstream 338741 25375998 ~ 25378765 (+) True G144270
TU195258 other downstream 434866 25472123 ~ 25474694 (+) True G144290
TU195320 other downstream 615749 25653006 ~ 25654250 (+) True G144333
TU195371 other downstream 749480 25786737 ~ 25788842 (+) True G144372
TU195623 other downstream 1713578 26750835 ~ 26754442 (+) True G144584

Expression Profile