RNA id: XM_007255724.3


Basic Information

Item Value
RNA id XM_007255724.3
length 1578
RNA type mRNA
GC content 0.51
exon number 10
gene id LOC103036193
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 24713729 ~ 24733773 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATAAAAAGTTTGAGGTGGAGGCTCGAGCAGAGTTTGGCGAGTAGGAGGGAGGGGGTGAACCGTGCTAACGATTTAccgagagaggggaaaaaaaatgaccGACACAGACGTTCAGGAGGCTCCTCCGTCAGCAGCGGAGACCCAGGAGGACCTGCCGCCGGAGAGGAAAGTAATCGCTACTCTAGTGCAGGGAACTGTGAAGTGGTTCAACGTACGAAATGGATATGGATTTATCAACAgAAATGACACCAAAGAAGATGTGTTTGTACACCAGactgCCATTAAGAAAAACAACCCTAGGAAATTCCTCAGAAGTGTGGGAGATGGGGAAATTGTGGAGTTTGATGTAGTTGAGGCAACTAAAGGCTCAGAAGCTGCCAATGTGACCGGTCCAGGTGGGGTGCCTGTCAAAGGTAGTCGCTATGCTCCCAACAAGCGCAGATTCCGCAGACGCTTCTTCCCGCGGAACGCAAGGCCTGGCCAGGTGGAGGGGAAGGCTGGAGATTCTGGTGCTCTCACATCTGAGGGAGAAGGCGGAGAAAACGGCACCACTCAGCCAGGGGTACGCCGGCGTCGTCCACGTAGGAGACCTGTTTCACAGCAAGGCGAGGAAGAATCGGGGGATCAGAAAATTGAGATGGCAGATGGTGTCCAGCAGAGGCCACCAGCACGTAGGTTCAGACCTCGGTACCGCAGACCATTCCGTCCACGTCCACCAcctggagagggtgagcaggaAGCCACACCTGCTGAAGGCCAGAAGGAAGCTTCAAAAGAGGGCCAGAGCAATGGGGAGCCAACTGACGGCCAGGCCCAGAAACCCCGCCGACAGTTCAGCCGCCGGAGACAGAGGAACTCTGACTCCACTGCATCCAAAGACGGTCAAGAGAAGTCTGAACAAGCAGACCCTGCATCCCCTGTTCAGTCTTCAAAGCCACCTGATGCCAAAGCCTCCCCAAAAAGCTCCCCAAAACAGTCCCCAAAAGCATCTTCTCCAAAATCAGCTGAGGTTCCTGCTCCCCCTGCGGAGTGACTTCTGTGACCTGGAGGGAATCGAGTGACCCCGGGAAGAGGTCCCCGGGTGGGTTAGCTTGGGTGGATGGACCTCGTCTGTCTCAAACACACAACCGACGTGCACACAACTATTCCCTCCCCCCGCACCTCTTGCCTCTATGCTTTAGTGTGGGTCAGTCATTTGTATTGGGTGGaaggatggagaaagagagaaggaagggGGAGGAGGGGTGACGAgtatatttggaatttaaaaTCTTTAGGGGGATTACacacagaaaatatataattgctCAATTCCCAGACTATTTGAATCATCTCCCCCTGTAGTTCAGTGAGATGGGTGTGAGcagctaaaaaaagaaaaccagttTGGCCCTTTAAGTTTGACAatcagggggaaaaaaaaactaaataaaagtgtaagtGGGGtggggtgtgtagtgtatgCCTCCACTTCTTACCAGTGTCTAGATGAGAATTGCTACAGGTCTATTCAAAATGTACGAACtggttaatttttgttttttttcttagtattttttttttctctctttccctttt

Function

GO: NA

KEGG:

id description
K09277 YBX2; Y-box-binding protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU194880 lncRNA upstream 23554 24689795 ~ 24690175 (+) True G144014
TU194864 lncRNA upstream 111327 24557282 ~ 24602402 (+) False ppp3ca
TU194860 lncRNA upstream 285231 24428062 ~ 24428498 (+) True G144000
TU194830 lncRNA upstream 430579 24282034 ~ 24283150 (+) True G143973
TU194821 lncRNA upstream 523847 24189634 ~ 24189882 (+) True G143964
TU194906 lncRNA downstream 82091 24815864 ~ 24816084 (+) True G144038
TU194993 lncRNA downstream 117117 24850890 ~ 24851126 (+) True G144113
TU194996 lncRNA downstream 140541 24874314 ~ 24876737 (+) True LOC111188189
TU195027 lncRNA downstream 183913 24917686 ~ 24917987 (+) True G144125
TU195034 lncRNA downstream 202052 24935825 ~ 24936380 (+) True G144132
XM_007255727.3 mRNA upstream 9301 24693102 ~ 24704428 (+) True gps2
XM_007255731.3 mRNA upstream 24143 24686265 ~ 24689586 (+) True LOC103038819
XM_007255733.3 mRNA upstream 52622 24657413 ~ 24661107 (+) True ddit4l
XM_022678230.1 mRNA upstream 65004 24616116 ~ 24648725 (+) False LOC111194343
XM_007255726.3 mRNA downstream 35574 24769347 ~ 24781192 (+) True LOC103037427
XM_022678327.1 mRNA downstream 49332 24783105 ~ 24802986 (+) True LOC103035878
XM_007255719.3 mRNA downstream 77204 24810977 ~ 24813754 (+) True LOC103035573
XM_022678252.1 mRNA downstream 122999 24856772 ~ 24874228 (+) False LOC111188189
XM_022678249.1 mRNA downstream 122999 24856772 ~ 24874228 (+) False LOC111188189
TU194884 other upstream 2196 24707083 ~ 24711533 (+) True G144017
TU194671 other upstream 797647 23827948 ~ 23916082 (+) True G143836
LOC111194174 other upstream 1306835 23403688 ~ 23406894 (+) True LOC111194174
TU194568 other upstream 1318489 23385168 ~ 23395240 (+) False LOC111194251
TU194997 other downstream 123233 24857006 ~ 24871749 (+) False LOC111188189
XR_002651001.1 other downstream 159219 24892992 ~ 24894553 (+) True LOC111194253
TU195051 other downstream 265000 24998773 ~ 25004171 (+) True G144146
TU195235 other downstream 642225 25375998 ~ 25378765 (+) True G144270
TU195258 other downstream 738350 25472123 ~ 25474694 (+) True G144290

Expression Profile