RNA id: XM_007258067.2


Basic Information

Item Value
RNA id XM_007258067.2
length 2243
RNA type mRNA
GC content 0.45
exon number 1
gene id LOC103025339
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 7160020 ~ 7162262 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tgtgtgtgtgtttgtgtgcatcaTCTCACCTTTGGTATATAAGTCCCTGCACAAAGAAGATTTGCTTTCTGCTTGTTTTATTGGTATTGATTTTTGCCTCAGCATGACTTGGCGAGATTTAACCGACTGATAGGAGCTCTTGTTGTTGAGTCAGAATGGCCCTGCAGGACGTCTGTGGATTTCAGGAGACTGAATGGAGGCACCCAGCTTCTCCTGCTGGTGCCGTGCTAAGCGTTAACCCAGCAGGTGAGATTAAAGCCGCGTGGAGGGATCCGTTTGAGAAAGATGTTGGAAGTCCACTTTGCTTCCTTTTGCCACCTCGGCAAAGCCAAACTCGGAGCGCAAGGAGTTCATCCTTGGCTACTGTTCCACGCCCTTTCCCCTTGTCTCATGGCACCACAACGCTAGGCTTCGTCTTTCAGGGTGGAGTGATAGCGGCGGCTGACACTAGGGCAAGCTGTGCAGGGCTGGTCGGATGCCCGCTTGCCCAGAAGGTGATACCAATCCACTCGCACATGGTGGTCACTACATCAGGCAGCGGGGCGGACTGCATGCTGTGGGAACGCATCCTGACAAGGGAAATACGTCTCTACCAGCTTCGCCATGGCCGGAGACTATCAGTAGGAGCTTCTGCAAAGCTGCTTTCCTTCATGCTCCATCCCTTCAAGGGCACTGAGGTATGTGTGGCAGCTACACTTTGTGGGTGGGATGAGGAAGAAACAAGGCCAAGAAAACACAGTATGaagagaaaatcagatttggatgacaaagaaatggatTCAAGTGCCTCTGACTTAAGCACTTCATGGGAATCATGGGCTACACCACAACAACCCAGTGGCTTCCTTGTTGGCTCCAAGGAAGTTGGTGGGAAGCCACCACAAGGTCAAATCTCAGAATATGGAAGTACAGCCGTCTGCCGGTCAGGCCCCAGGGTGTGCTATGTATGCAGTGATGGCCTGGTGATAAAAGCAGAGGTCATTTCGGTCGGCTCAGGCTCTCCCTACGCCTACTCTGTTCTCGATGACGGCTGGAGGTGGTCCATGGGTGTGGACGAGGCCGTGGTTCTAGCAAGGGAGGCAGTTTACAGGGCCACTCACAGGGATGCATACTCCGGGAACAACGTAGACCTCTTCCACATCACTGAGCGTGGGTGGAGCCGTCGACCCAGAGAGGACCTGAAGGAAGAGTactacagggagaggaggagggagaaGGAGGCGAtgcagaaaagagaaagagaaaaacaggaaagagagggagtgatTTTGACTAAACGCTGAATAATGTGTACTGTGTGCACTTGCTAGCAGATGAGGGCAAGAATTGGGGTTACTGGatagtaacataattaaattacttattaaaatgatatttttctgtttagtataaaaaaacaaaaaggcttTATAGTCATGATCTAATCCAGAGGTGTCAACCCTGGCCACATTATTAACACAGAGTGGATTCAGATTTGTATTCGAAACAACCAGCTGCACACctgatttcacctgtttaatGAGTTGGTCAGTCTTCAAACTGGTAAAACTgatgaaaacctgcagccacatcCACCCAGTGTGAATAGGCTTGACACCCCTGAAGGTTTAtttctttcaataaacacaataactttttaaagaacACAATAACTTTTCTTTAATGAccttttactgtatatatagtggTGCCTGATTAAACTTAGTAGTTTTACTGATTTAATTGTGTTAATTGGGTACTTAGACATTTCAATGTTCAATATTCACTTCAATATTCACTTGGCtgttttggaaaaaatatttagctatttaattgtgtctgcactgatgtgggaattctgggctgATGCCGATAACCGATATTAGGCTACACAGGTTCATATCTGCAACCTTACAGAGAGATTAGACACCCCAGtataactttataaataaatgttacatttatgtATCttgcattttagcttttaaccaaCTGTAAgcaaacaatgaaacaaaaggTGTCTACTGACAGATTAGTTTACAATTTCTTgggtttcacatttatttagctaactgTTCCTTACAAAGACTGCTCACAGCTTTAAACTCTCTTGTTACCTTTTTAATTGTTTGGTCAATTGTAGTGGTGCGGCCAGTGTTGCTTGGGCATACAATTCCCAGCATACAATAAGTACATCAGCAAGTATTGGCTTGAAATCTGACAAATCAATCAAAAGCAATTATCGGCTGGTACTGATATAATTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU188732 lncRNA upstream 72338 7086977 ~ 7087682 (+) True G139401
TU188725 lncRNA upstream 110291 7046418 ~ 7049729 (+) True G139395
XR_002651017.1 lncRNA upstream 120640 7031810 ~ 7039380 (+) False LOC111194296
TU188727 lncRNA upstream 127348 7029282 ~ 7032672 (+) True LOC111194296
TU188697 lncRNA upstream 226547 6931518 ~ 6933473 (+) True G139375
TU189130 lncRNA downstream 29646 7191908 ~ 7192404 (+) True G139710
TU189132 lncRNA downstream 40670 7202932 ~ 7203256 (+) True G139712
TU189165 lncRNA downstream 313708 7475970 ~ 7476346 (+) True G139737
TU189166 lncRNA downstream 344790 7507052 ~ 7507357 (+) True G139738
TU189175 lncRNA downstream 377397 7539659 ~ 7539943 (+) True G139747
XM_007258052.2 mRNA upstream 113722 7041560 ~ 7046298 (+) True LOC103044361
XM_007258049.3 mRNA upstream 141490 7005464 ~ 7018530 (+) True LOC103043453
XM_022677925.1 mRNA upstream 155771 6995553 ~ 7004249 (+) True LOC103024705
XM_022677926.1 mRNA upstream 170649 6975971 ~ 6989371 (+) True LOC111194294
XM_015608064.2 mRNA upstream 190821 6958536 ~ 6969199 (+) True LOC103043149
XM_007258057.2 mRNA downstream 2522 7164784 ~ 7184403 (+) True psmb5
XM_022677940.1 mRNA downstream 2623 7164885 ~ 7184403 (+) False psmb5
XM_022677941.1 mRNA downstream 68274 7230536 ~ 7250133 (+) True LOC103025648
XM_022677942.1 mRNA downstream 172742 7335004 ~ 7654533 (+) True LOC103025951
XM_022677943.1 mRNA downstream 172742 7335004 ~ 7654533 (+) False LOC103025951
TU188724 other upstream 113732 7041674 ~ 7046288 (+) False LOC103044361
TU188586 other upstream 892633 6266816 ~ 6267387 (+) True G139282
XR_002651011.1 other upstream 917449 6238156 ~ 6242571 (+) True LOC103028159
TU188563 other upstream 999854 6159720 ~ 6160166 (+) True G139268
LOC111194289 other upstream 1016119 6143375 ~ 6143901 (+) True LOC111194289
TU189488 other downstream 1999071 9161333 ~ 9162505 (+) True LOC103030954
TU189503 other downstream 2060347 9222609 ~ 9223156 (+) False LOC103030224
TU189594 other downstream 2377513 9539775 ~ 9540810 (+) True G140062
TU189643 other downstream 2581436 9743698 ~ 9745355 (+) True G140103
TU189871 other downstream 2827656 9989918 ~ 9990296 (+) True G140258

Expression Profile