RNA id: XM_007260179.2


Basic Information

Item Value
RNA id XM_007260179.2
length 1976
RNA type mRNA
GC content 0.47
exon number 5
gene id rgs20
representative False

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 13796394 ~ 13846951 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCCACTATGGATACACACTGCAGTGCTCACTGGAGTTGTAGCCGTATCGCTTCTCCCTCCTCATTAAGGACCAACAGTGATGTTGGCGCTGccacagatggatggatggcttcGGTTCCCTAAGCCTGCGCCGTCTCACTGACAACCctgcctgctgctgctgaagtgAGAATGCTCTCCAACAGGATTGTGATAAAGTGGGAAGTATCTTCTGCGGTGCAGTGTATTGaccacacacacttctttaTGTGTGGGCAGCTGCAGCGGCTGCTCTTCGCCTGCCGGCACGGGGAGGGTTATTTGGCTCCAGTTCCAAGTTATGAAAGTGACATTGAGCACGGACATGGACCGGTGGAACCTATATCCTTCCAGCCCATGGGATCGGAGAGGATGGAGATGCGAAAGAGGCAGCTGTCAGGGCAGCAGGAGGCGGTGGCGGGGGTGACAGTGACGGCGCCGGCACAGCAGGGCCAGGCCGGCCAGGGCCAGCGTGCCTCCAACGcctgctgcttctgctggtgctgctgctgcagctgctcctGTCTCACTGTTAGGAATGAagacagagaggagaggaacCGGAAAGCCTCGTACGACGTCAAAGCAGAGGGCACCACCGACTGTGAGGAGAGCCCGAATCCCACTGTGGAAGAGGTGCGCGCGTGGGGGCAGTCCTTCGATAAGCTGATGCACTGCCCATCCGGACGCAGTGCCTTCCGCCAGTTCCTGCGGACAGAGTTCAGCGAGGAGAACATGCTCTTCTGGCTGGCCTGCGAGGAGTTCACCAAGGAGACCAACAAGAGCGCCATCGAGGAGAAAGCTCGCCTCATATACGAGGACTACATCTCCATCCTCTCACCCAAAGAGGTGAGTCTGGACTCGCGTGTGCGGGAGGTCATCAACAGGAACATGCTGGAGCCCACGTCTCACACTTTCGATGACGCCCAGCTGCAGATTTACACCCTAATGCAAAGAGACTCATATCCGCGGTTTATGAACTCGGCGGTCTACAAAAACCTGCTGAAGAGCGTCTCTGAGCAGTCTCCAGAATCCTAGATCTCTGTGACCCCACTCCAGTAACCCCAccctctccttcttcttcttcttcttctgcttctgcttcttctttttgttgttcttttttctcatttttttctttgagtAGAGTATGTTTAAAAGGACCTCAGCGTGGGTCCCTTGCAGGGATTTTACTGCATTAGAGATCTGTACCTGAAAAAAGACACTCAGGTCCTCCAGGTCACTggattttaaaaacaatgtctCAAATCTCCTGAGGGCTCAACACCACAAGTACTGCTACAGATCAACATAGCAAGATGCTCCAAAGGAAtaccagtgtgtttttttttcttcttttttttctttcttttgtgtttttaaagaggaataatctattttatttgttttctgagtttcttttttaattattgtttttaaaatacaattttttgtattctgtttgaAAGAAGACGTGACACCCGTTGTGggctatttacagtatatacagtagatatatTTATTGAATTTGTAATATATTTCCTCAACAATCTTTCTTGtcttacaatatttaaagaaaagggAATTATGGGTAACAGGACGTGCCCAGTTCTGAACACTGCGTATGAGAATCAAAGCTCAAAGTCAAGGCAACACATCAGCTTTACGCACAGGAAACTGTGTGAGGTACTGTAACAATCCAGCTCCGCATATTTCATTACCTGTTCCCTCCCATAATCACTTGGCACCTCCAATCGGAGAAGACATTTCGCCATATTTAAGATGTTTTTGTTATTCAGATCAGTGttaaaagagtgaaaaaaggCAGAAACTAAATAGAAAGTTATTTGAAAGAAAATCAAATCTCAGATTTATAAATGCTATCAGCTAATCAGCAAACCCACTCTtcatcatatttattatttaaaccctgATTTCATTCAGTTACATATTTCCCA

Function

GO:

id name namespace
GO:0043547 positive regulation of GTPase activity biological_process
GO:0038032 termination of G protein-coupled receptor signaling pathway biological_process
GO:0005886 plasma membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005096 GTPase activator activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU191313 lncRNA upstream 5036 13758683 ~ 13791358 (+) True G141323
TU191295 lncRNA upstream 148322 13647861 ~ 13648072 (+) True G141311
TU191274 lncRNA upstream 207935 13588090 ~ 13588459 (+) True G141292
TU191273 lncRNA upstream 208569 13587352 ~ 13587825 (+) True G141291
TU191265 lncRNA upstream 209961 13585828 ~ 13586433 (+) True G141285
TU191428 lncRNA downstream 321763 14168714 ~ 14170792 (+) True G141405
TU191429 lncRNA downstream 325275 14172226 ~ 14173432 (+) True G141406
TU191437 lncRNA downstream 335093 14182044 ~ 14193703 (+) False LOC111194315
XR_002651024.1 lncRNA downstream 335510 14182461 ~ 14193663 (+) False LOC111194315
TU191441 lncRNA downstream 338256 14185207 ~ 14191053 (+) True G141413
XM_022678039.1 mRNA upstream 359191 13393377 ~ 13437203 (+) True LOC103030306
XM_007235293.3 mRNA upstream 949214 12842798 ~ 12847180 (+) False LOC103029537
XM_007235294.3 mRNA upstream 949214 12842800 ~ 12847180 (+) False LOC103029537
XM_022678038.1 mRNA upstream 1064026 12708110 ~ 12732368 (+) True LOC103030385
XM_022678034.1 mRNA upstream 1331747 12179700 ~ 12464647 (+) True LOC103027534
XM_022678041.1 mRNA downstream 19336 13866287 ~ 13882845 (+) True LOC103040707
XM_022678043.1 mRNA downstream 53957 13900908 ~ 13918612 (+) True gpr141
XM_007260184.3 mRNA downstream 56289 13903240 ~ 13918612 (+) False gpr141
XM_007260188.3 mRNA downstream 91334 13938285 ~ 14142611 (+) True LOC103035806
XM_022678044.1 mRNA downstream 369159 14216110 ~ 14219347 (+) True LOC111194316
TU191033 other upstream 946452 12842814 ~ 12849942 (+) False LOC103029537
TU191019 other upstream 1052941 12741473 ~ 12743453 (+) True G141086
TU190827 other upstream 1414840 12378996 ~ 12381554 (+) True G140930
TU190829 other upstream 1555769 12237988 ~ 12240625 (+) True G140931
LOC111194237 other upstream 2340384 11455485 ~ 11456010 (+) True LOC111194237
TU191361 other downstream 8652 13855603 ~ 13858605 (+) True G141361
TU191433 other downstream 333714 14180665 ~ 14200998 (+) True G141410
TU191577 other downstream 681189 14528140 ~ 14530296 (+) True G141495
TU191927 other downstream 1207706 15054657 ~ 15056973 (+) True G141740
TU192022 other downstream 1381759 15228710 ~ 15285457 (+) True G141791

Expression Profile