RNA id: XM_007260188.3


Basic Information

Item Value
RNA id XM_007260188.3
length 6237
RNA type mRNA
GC content 0.52
exon number 23
gene id LOC103035806
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 13938285 ~ 14142611 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

acgGAGAGagagggctgctgctgctgctgctgctgtctctcCGTGGCCGTTTTTCCGCCTCCTTTTCTTCCCCAGCTGTGGATGTTTTTAGCGGATGCTCTCGGCGTCTCTCGGGCGGTCGGTGAGGGATGGTTGACATTATTAGCTGTGTGTTTCAATTTTCGGCGTTAATCTGAAAACGGAGGAGGAAGGAGATCATATGTACTCGGAGTAATGCCAGTTCCTGATCAACCTTCTGACAGTGAAAACTCCAGTATGTTGAGCCCAGTCCTTAACGCCTCCAACGGGGATGGATCTGAAACAGAGACTACCTCTGCTATCCTGGCCTCCGTCAAGGAGCAGGAGCTGCAGTTTGAAAGACTGACCCGAGAGCTCGAAGCTGAGCGACAGATTGTGGCCACCCAGCTGGAACGATGCAAACTGGGATCTGAGACTGGGAGTGTGAGCAGCATCAGTTCTGCTGACGAGAAGTTTCGCTGGAACAATCAAGACGGACAGAAGGATATAGAAGAAGAGCTCACCACCGGCCTGGAGCTCGTGGACTCCTGCATCAGATCTCTGCAAGAGTCTGGAATTCTGGATTCACAGGAATTTGCAACAGGAGAAAGACCAGGCATCCTGTCTCAGAGtgctctacagctcaataaTCAAGAGGGCAACTTCCCTTATTCTggttaccatagcaaccagacCCTGGCCCTGGGCGACCCGTCAGCCTCCCAGCCCCCTCCACGCAGTGGTCAGGTGGGAGGAGCCGTACACAGCTATAATCAGGTGACGTCTAACCGTGCCGCCCAGCTGGCGGGCGGCGATTGCGCCCAGTCCAGAGACTCGTTTGCCCAGAGTCATGGTAGCGCCTTCCACCTGCCTGACGTCCAGCCTGCCACCTCCATCTACTACTCCTGCGCCACTCTGCCGGCCCAACGTGTGAGCTCCCCCCTCTCCATGCAGGCCCTGGACTCGCCCTCCAAGCTGCAGAGGCTGGCCTCAGCCTCCGACATGCCCAGCTACGCCACCCTGCAGCGCGTGTCCTCGCCCAAGCAGTCGCCCAGCCGCCTGGCCAAGTCCTACAGCACCAGCTCGCCCATGAACATGGCAGCTGGAGGGGGCTCCGCCTCTTCCCCTCTACACGCCATGTCCGGCCAGGGCAACGTCTCCAGCTCCTCCCCCCTCCACCAGCTCAGCTCGGTTGTAGGCAGCTATGCCACTCTGTCGCCCACTAAGCGAATGCTGCACTCCTCCGACCAGTACAAGATTTCCCATGACCTGTATGCCAACGCTACGCTGCAGAGGCCTGGCAGCCTAGCAGGTTCCAGAGGCTCGTACAGCAGCCAGCACAGTCACCTGGGTGGGGAGCTGCGCCCCCTGCAGTCCCCCGAGCACCACATCGACCCCATCTACGAGGACAGAGTTTATCAGAAAGCCCCACTGAGGAACTTCAGCCAGGGCCAAGCCCCGTCCTCCCCCGGTGTTGACCCCATCCCCTTGCAGCGCACGGGCAGCCAGAACGCCACCGGGACCTTTCCCCGCTCCGGCTACGCCACCGGACCCGGCGTCTCCGCGGCCGACTACGGCAACCCGTACCGCACTCTGCAGTTCTGCCCCTCCACGGACTCTCCCTACAGCAAGTCTGGTCCTGCTCTGCCACCCGAGGCCACGCTGGTCAGGTCGCCCTCCGTGGACAGCATCCAGAAGGACCCCAGGGAGTTTGGCTGGAGGGATCCAGAGCTGCCCGAGGTGATCCAAATGCTGCAGCACCAGTTCCCATCCGTGCAGTCGAACGCTGCAGCGTACCTGCAGCACCTGTGCTTCGGAGACAACAAGATCAAATCTGAGATTCGGAGGCAGGGGGGCATCCAGCTGCTGGTGGACCTGCTGGATCACCGGATGACAGACGTCCACCGCAGTGCCTGCGGGGCTCTGAGGAACCTGGTGTATGGCAAAGCCAATGATGACAACAAAATCGCTCTGAAGAACTGTGGAGGCATCCCCGCCCTGGTGCGCCTGCTTCGTAAGACCACCGATGTGGAGATCAGAGAACTGCTCACAGGGGTGTTGTGGAACTTGTCCTCCTGTGATGCTCTGAAGATGCCCATTATCCAGGACGCTCTGGCAGTGCTCACCAACACCATCATTATCCCTCACTCGGGCTGGGACTCCTCCCCTCTCCAGGACGAGCGCAAGCTGCACCTGCACTCCTCACAGGTGCTCCGCAACGCCACCGGATGCCTTAGGAATGTGAGCTCTGCAGGAGAAGAGGCACGTCGTAGGATGCGGGAGTGCGAGGGACTGACAGATGCACTGCTCTACGTTATCCAGACCGCTCTGGGCAGCAGTGAGATCGACAGCAAGACTATAGAGAACTGCGTGTGCATCTTGAGGAACCTGTCCTATAGGCTGGCGGCTGAGACGTCTCAGGGGCAGCAGCTGGGCTCGGAGGAACTGGACGGGGTGCTGTGCACCGACGCCAGCGGGAAGGACGCTGAGAGCTCCGGCTGCTGgggcaagaagaagaagaaaaagaagagccaTGATCAGTGGGATGGAGTGGGGCCTTTTCCAGACTCCGGTGATCCACCCAAGGGCCTGCAGATGCTCTGGCATCCGTCCATCGTGAAGCCATACCTGACACTGCTGTCGGAGTGCTCCAACCCGGACACGCTGGAGGGGGCGGCCGGGGCTCTACAGAATCTGGCAGCCGGAAGCTGGAAGTGGTCGGTGTATATCCGAGCAGCAGTGAGGAAGGAGAAAGGTCTGCCTATTCTTGTGGAGCTTCTGAGGATTGATAACGACCGTGTGGTGTGTGCGGTGGCCACAGCCCTCAGGAACATGGCTTTGGATGTGAGGAACAAGGAACTAATTGGCAAGTACGCCATGAGAGACCTGGTGCACCGGCTGCCGGGAGGGAACAATAacagcagcggcggcagcgtGGCAAAGAGCATGTCCGACGACACCATCACTGCCATCTGCTGCGCTCTGCACGAGGTCATTACCAAGAACATGGAGAACACCAAGGCCCTGCGTGACGCTGGAGGCATCGAGAAGCTCATTGGTATCGCACGCAGCAAAGGAGATAAACACACGCCCAAGGTGGTGAAAGCAGCGTCTCAAGTCCTGAACAGTATGTGGCAGTACCGGGATCTGCGCAGCCTTTATAAGAAGGATGGCTATTCTCAATACCACTTTGTGGGTTCATCCTCTacaatagagagagacaggcaaaGACCTTATTCATCTTCACGcactccctccatctctcctgTGCGAACTTCCCCCAATAATCGCTCAGcGAGCGCCCCTGCCTCCCCTCGAGAGATGATGAGCCTGAAGGAGAGGAAGGCGGACTACGAGTCAACTGGAACCAATTCtggttaccatagcaacaaggGCGAGCACACCTCCCGAAAGGACGCCATGGCAGcgcaaaTCTCCAGTGGAACCTCCACTCTGTTCCGAGGTGCTTACGTGTCTCCCAGTGACGACCTCAAACATAACCAGATCTCTGCTCAAGGAAACCCTCCAGAGGCCTACCCTCCCTTCCAGACTCCCCCAGGAGCCAACTTCGAGGAGAATTACTACGAGGACCAAGTGCACCAGCGCCCCCCGCCCGCCGCCGACGGCACCATGCACCTGGGCCTGAAGTCCACCGGCAACTACGTGGACTTCTACTCAGCCTCCCGGCCCTACAGCGAACTCAACTACGAGACGAGTCACTACCCGGCCTCGCCCGACTCCTGGGTGTAGAGGCGGAGGGCCGGGCTGAGGACGCGCCGACACACGGAGAGAAACCAGCCCCGCATGTGCATGAACACTATCggagacacacactcacactcacacacagacatgccccTTCAGTTCGGATCGGACTGGGGATCCCACTGAGCTAGCTGTTCATCCACAGTGGCTGTCAGAGACAGTGtctgaaaaagaagaagaagaagaagagatagAAAAATGGGATGATGTGGAGAAAGGCTAAGGCGTTGTTTTTATCGGACACACAAGCCCCACGAGTGTGCGGACGGACggtgttctgtctgtctgtgtgctgaGGGAGCGCAGGAACATTCAGAAAGCGTTAGGGAAAGCTGTAAATACAGGTAGGGAAAGGAGGTGAGTACGTGAAGCACAAGAAAACGATACATCATTTAACACAAGCTGAGGAAAATAGCTCTGACTCATTTTTAGAACATTCGTTTGAGTTCGACCTGCTTTTTAACGGAGTGCTCTTTTCACGAGGAGCTTCTCAGagcctttttatcttttttgttcATTCTCTTTATTTTGTACCTCCTCTTTTTAACTTCTTAATTCTAGTGTAAAGTATTTGATGTATATTGCAGATGTAGATACATTGAAGTTACATTGTGTATAttacagggaaaaaaaatactgtgtccTCACTCCTCTGTGGCTCAAAATATCGTTTTTCTGGTAGACCTGGGAAACGGAGGGAGGGATACGCGGTTTAAAACGTTCTCTACTGTAGGTATGTAAGGTATGTGTCGGCAGCAGAAAAGGTAGGCTGTGATTTTAGAAGCTGTAGTTTACTCAGACGTCAggatttcttctttatttctttttatttttaagaacaatTGAGACCATAACAACGAGTGCTGAGTGCTCTACTGCCTGGCAAGAGTTTACCGGTGAACATTTTAACCTCATTCTGCTCAGTTTTTTATGCTTTGTAAAGATTCAGCGAAATgcttttctttgtgtgtgtgttttttttttttctctttttttttctttttctaaatcacactgaactgaaactgTACTGTTCCACTCGGCTCCCAGTGATCTGTGctccatttttgtaaaatgtgcCAAACGTGTTTATCCCTGAGCCAGGGGGGTACCGCCAAGCCTACGCTGAAGTTTACAGCGTAAACATTCAGCGCCTGCGTCATTGGTCGTAACGATACCAGtttgtaaatgctttttttgtttgtttctttgtttgttcgTTCGTTCATTcgtttttttaacatgtttcaAAGGCAAAGAGCCACACACTCTACATCAAGACTGAGGTAACGCTTGGGGGGacgcagccaatcagagctaAGATCCCTCCTACAAATGTACAATTAGTTTACGCTGTGTTGTAAAATAGACGACTGAACAAATCCgtttgttttatttccttttccTCCTCCAGAAAATCGGTGGTTCTTAAGTTCATCGTAGACTAATGTCAATAGAGTacgaatatatattatataaatacaaatatatataaatatatatactttttatgtGCAGATGTGGATGTCACCTAATGCAGCAAcatttatgaagaaaaaaaagacaaagacttGTAGGAATACATGTAGGGTTTTGTTCACGTTAATTTCTGATCTAAATTTTCACTCCAAACTGTTGCCCTCCTCTTGTCATGTCGCCGTTGCTGTGTGAAACGGGTGAGACCAGGGCTCCAGGCACAGAGATGGACGATGTGTCCGAGTTTCTAACACTGATCAGAAAcggtgctaaaaaaaaaaaagacaaacaataaaaaaagcaaaagagagagaacccCACGTCCACATTTTAGTGTCAATATATAATGTTTGCCATTTGATGTCGCTACCTTTCTAAAtatcaaagcagttttaaaAGTGTTTCATACCCAGACTGAAAattagccccgcccccttcaCATTgctaaaaaattaaagaaaaaaaaaaacgacaacaCTGCGAAAGCGCTGCTAGTCTGGACTTGCTTGTAGAAAAGTGACTTTGAGTTGTGATTGCCCTTCTCTCTTATCTCAGGACATCTTACCTTGGCTCTCTGAGGGAGCAGCTCGGCGAACGCTCCTCCTCTCAGACTGAAAGACAGATGCCGCGAGCAGCAGTCGAGGCCTCTGCTCGAGCTGTTACTTAATCTGAAGTGGTTGAGGACCCTTTGAAGTGTGGCGGCAAGCCCTGGTCTTCCCTCCATATcattttgaatttagagataACTCGTCAGACGCGAGGAAACGGAATGATATTTCCTGAATTCGTCTCACATATCTTTCAGCACTGTCAATAGTGaacatgggggaaaaaaaataaacatgcgAAATATTTGTGGAAAAAGTAGACATGTCTGATGACCTGTACTGGAAATGtaagtacatttttttgttgctaGACAAAGTGTTTGAGAGACTTGTGAACCTTTTTATTGCCAGATTGCAACTGATATAAGATAAAAACTGACTATGGGAAAAA

Function

GO: NA

KEGG:

id description
K23491 CTNND2; catenin delta-2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU191316 lncRNA upstream 88303 13793016 ~ 13849982 (+) True G141324
TU191323 lncRNA upstream 107255 13826703 ~ 13831030 (+) True G141329
TU191313 lncRNA upstream 146927 13758683 ~ 13791358 (+) True G141323
TU191295 lncRNA upstream 290213 13647861 ~ 13648072 (+) True G141311
TU191274 lncRNA upstream 349826 13588090 ~ 13588459 (+) True G141292
TU191428 lncRNA downstream 26103 14168714 ~ 14170792 (+) True G141405
TU191429 lncRNA downstream 29615 14172226 ~ 14173432 (+) True G141406
TU191437 lncRNA downstream 39433 14182044 ~ 14193703 (+) False LOC111194315
XR_002651024.1 lncRNA downstream 39850 14182461 ~ 14193663 (+) False LOC111194315
TU191441 lncRNA downstream 42596 14185207 ~ 14191053 (+) True G141413
XM_022678043.1 mRNA upstream 19673 13900908 ~ 13918612 (+) True gpr141
XM_007260184.3 mRNA upstream 19673 13903240 ~ 13918612 (+) False gpr141
XM_022678041.1 mRNA upstream 55440 13866287 ~ 13882845 (+) True LOC103040707
XM_007260179.2 mRNA upstream 91334 13796394 ~ 13846951 (+) False rgs20
XM_022678044.1 mRNA downstream 73499 14216110 ~ 14219347 (+) True LOC111194316
XM_022678045.1 mRNA downstream 114261 14256872 ~ 14269906 (+) False LOC103037989
XM_022678047.1 mRNA downstream 114261 14256872 ~ 14269906 (+) False LOC103037989
XM_022678046.1 mRNA downstream 114715 14257326 ~ 14269906 (+) False LOC103037989
XM_022678048.1 mRNA downstream 119253 14261864 ~ 14269906 (+) True LOC103037989
TU191361 other upstream 79680 13855603 ~ 13858605 (+) True G141361
TU191033 other upstream 1088343 12842814 ~ 12849942 (+) False LOC103029537
TU191019 other upstream 1194832 12741473 ~ 12743453 (+) True G141086
TU190827 other upstream 1556731 12378996 ~ 12381554 (+) True G140930
TU190829 other upstream 1697660 12237988 ~ 12240625 (+) True G140931
TU191433 other downstream 38054 14180665 ~ 14200998 (+) True G141410
TU191577 other downstream 385529 14528140 ~ 14530296 (+) True G141495
TU191927 other downstream 912046 15054657 ~ 15056973 (+) True G141740
TU192022 other downstream 1086099 15228710 ~ 15285457 (+) True G141791
TU191950 other downstream 1243005 15385616 ~ 15390415 (+) True G141754

Expression Profile