RNA id: XM_007260197.3


Basic Information

Item Value
RNA id XM_007260197.3
length 2878
RNA type mRNA
GC content 0.42
exon number 9
gene id LOC103039460
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 14461990 ~ 14472520 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CGATAGTCACGCCCCGCGGAGCAGGAAGCTGTGACCTGTGTATGAGGACGAAGTTTAGAGGTGTTCTGTGTTCTTTCCTCTTGTTGTGTTACTGTGAGAATAAATAAACGCTAGAGAATGCTGGTGAACGCCTCTCAGCGCGGTGTTCTGTCTCTGGGCGCTGTGGAGAGCGTTAGTAAGCGCTGCTGGTGCTGCTCGGTCTGTGGGAGTTTGACCCGCGGGGGACTGAGGCTTTCTCCACGCCGCGCTGCTGCTCTGAGGCGGGACGGCCGCGCAGAGCTCCCCCGGCCTCCGACACCGGTACCGGGGGTGGATAAACACAGCGCTGAGCTTCGGCTGGAGTCGCCCGCTCCCCTCAGACAGTCCCTGCTGTGGCAGAAAGGAAAATCTCACCTCAGTCTGGTAGTTGgaccttttttaaaaaggacTCAGTCTGGTCCTGGGACGGAGAGCGTGTCTATACTGAAAGGCCTGCGGTGgctgctgttcagagAGTTGAGCACCTCCAACAAAGTCATGCAGTATGATCTGGGTTCGAGAAACCTTGAAAAGTCTGGCCACAAAAAGCTCATGTTTGATACACACGCAATGTTTCAGTATTTGGAAGCCAGTGGGTTCACAAGCCAGCAGGCAGAGATTATCATCAAGATTCTGGTCAACACAACCAACACCAACATGGATATCATGTACAGTGATATGGTCACAAAGACTCAGCATGAAATCATGTTGCAGAAGGTAATGTCTCACATTACTGCAGTGAAAAAGGACATGATTATCTTGGAAAAAAGCGAGTTCTCTGCGTTACTGGCAGAAAATGATagaataAAGGTTGAACTTGCACAGCTCAAGATTCAGCTTTTAGATATGATGAACAAAGTACGTGTGGACAACAAGTTGGATATGAACTTAGAAAAAAGTCAAGTAAAGGAGATGAAAGCAGAGCATGAAAAGAAGCTGCTGGAGACAAGGAACGAGATGATCGAGATGcttgcaGAACAAGAACGCCATGTGACTCAGAATAACGTGAAAATCGACACAGAAGTTGCCGGCCTGAAAACCATGCTGGAGTCCCACAAATTAGACAGTATCAAATATCTGGCAgGGTCAGTGTTCACATGTCTCACTGTAGTGCTGGGATTCTTTCGAATATGGATGTAAACTGGTGGCTGTGTCAATACTTAAGGATGATTTCCATAACAAAAGAACAACAAAGCCAGAACTGGAACTGTTGTTAGTTGTATTTGTCTGGCTCGAACATTCCTGATTCTGCCTACATTTATGCACTATTTTTGCTGGTGATaccagtttttttattgttcagttAAATCATGTAATTACAATGCACAGAGTAAACAGTTTAAAGGTGCCTTAAAATGGAATGTATTTCTCTTAGCATAATGCAAATCTTAGAAACATAAACAAATCTGAGCAGTGtgacaagccaattgcaaaccCCCAAAACTGTTACTAGCAGTCCAAGATGGCGGCATGGTAAAACACAGAGGACATGTCTCatcttttgtgtgtttaagaATGAACACCACGGTCTTCGAATGTGGaataaggcgctgccactatgatcaggagatcaccggttcgaatcctgtttatgcagcttgccatcgactaccagagccctgagacagcacagttggccttgctctctctctgggtgggtctCTCCCCCATCACTCTTAGAGTGAAATCGATCAGTACAGggtatctgtgagctgatgtatcggaatcgagttgctgcgctttcctccgagcaggctgtgatgctactcggaaatgctgcatcagcagcagttcaaaaagaagccgtggctgacttcacatgtatctgaggaggcatgtgttagtcttcaccctcctgatgcTGGGACATTACTAGAAATGGGGGgactcctaatgagtgggttggataattggctgtgtaaaatgggataaaaaaaaataaaattaaataaataaaattatataaaaaagaatgaaCACCACAAATGTTTTAGCCAGTTGTGCAATGACCAATGCATCAAGAACAGTGCCTCTATGTACACAATGTGTACTGGCTTGAACACAATATGCATCATAATACTGGGATTACTATTCATTTTATCACAGTATATTACGTAAGAACCTGATTTATTGTAAAAACCGACACAATCATATTtctttttccatattttttgaaaaatttGCTTTTTATCCaaacagaacagtgggatctaatgaGAGAGTACAATAGTGTCATTTAGCGGGGTTTAAACACTACACagaatgaaccactgtctgtcACCAATTcttacataattaataattaaatatctgtgtttttaaaaaacgatACAGTATTACAATATTGATACTTTCTTGCAACCCTTGCTAACTTCACTTTAAACTGAGAGGGTAGCATCACTATCTAGTAGAATTGCTCTGGTAAAATTGAAAGCTGTTAATTTTATGTGAACCATCACTGTGGCTAGCTGGTTACCCGAGCTCATTAAATTATTCACATAAACAGGACTAAAAGCTTGTTTAATTCTTGAAAGGGTTGTAAATGGGCTTAGTCACACATCATCTATTTAGACACCAGATAACAGTTTACAACACTAAATCAATGCATCTTGTGACAACATTTAAgactaatattaaaataaaggacaaaaaatatgcaaaataataGATGAGCTGTGTATGATACCAAAGATTATCATTTTGTGTGTACATATAGATGTATATGCTTAGGTCTACACTTGCCTTTCactgaaatgtaaatgtattgctTGGAATGTTTACTGTATGATTATTATTGTGTGTTTAAAGGTTTCTCTGAGCGCTGAATAAAACTTATAGATGTCATACATCAGTAGCAGCa

Function

GO:

id name namespace
GO:0006099 tricarboxylic acid cycle biological_process
GO:0051287 NAD binding molecular_function
GO:0004449 isocitrate dehydrogenase (NAD+) activity molecular_function
GO:0000287 magnesium ion binding molecular_function

KEGG:

id description
K22137 MCUR1; mitochondrial calcium uniporter regulator 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU191575 lncRNA upstream 19658 14440905 ~ 14442332 (+) True LOC111194202
XR_002650985.1 lncRNA upstream 19686 14441676 ~ 14442304 (+) False LOC111194202
TU191513 lncRNA upstream 225338 14222563 ~ 14236652 (+) True G141467
TU191498 lncRNA upstream 247726 14210460 ~ 14214264 (+) True G141459
TU191444 lncRNA upstream 253174 14202989 ~ 14208816 (+) True G141415
TU191588 lncRNA downstream 12500 14485020 ~ 14486617 (+) True G141501
TU191590 lncRNA downstream 12500 14485020 ~ 14486617 (+) False G141501
XR_002650986.1 lncRNA downstream 44826 14517346 ~ 14518444 (+) True LOC111194203
TU191613 lncRNA downstream 73277 14545797 ~ 14547039 (+) True G141514
TU191615 lncRNA downstream 80113 14552633 ~ 14553089 (+) True G141516
XM_007260196.3 mRNA upstream 3703 14452340 ~ 14458287 (+) True LOC103039154
XM_022678077.1 mRNA upstream 3703 14452340 ~ 14458287 (+) False LOC103039154
XM_022678068.1 mRNA upstream 53590 14272831 ~ 14408400 (+) False scrib
XM_022677712.1 mRNA downstream 5034 14477554 ~ 14488421 (+) True LOC111194238
XM_022677713.1 mRNA downstream 15911 14488431 ~ 14500190 (+) True LOC103041924
XM_022677714.1 mRNA downstream 39273 14511793 ~ 14512939 (+) True LOC111194240
XM_022677715.1 mRNA downstream 42950 14515470 ~ 14517074 (+) True LOC111194241
XM_007238407.3 mRNA downstream 75588 14548108 ~ 14551573 (+) True trmt10b
TU191433 other upstream 260992 14180665 ~ 14200998 (+) True G141410
TU191361 other upstream 603385 13855603 ~ 13858605 (+) True G141361
TU191033 other upstream 1612048 12842814 ~ 12849942 (+) False LOC103029537
TU191019 other upstream 1718537 12741473 ~ 12743453 (+) True G141086
TU190827 other upstream 2080436 12378996 ~ 12381554 (+) True G140930
TU191577 other downstream 55620 14528140 ~ 14530296 (+) True G141495
TU191927 other downstream 582137 15054657 ~ 15056973 (+) True G141740
TU192022 other downstream 756190 15228710 ~ 15285457 (+) True G141791
TU191950 other downstream 913096 15385616 ~ 15390415 (+) True G141754
trnae-uuc_20 other downstream 941256 15413776 ~ 15413847 (+) True trnae-uuc_20

Expression Profile