RNA id: XM_022677623.1


Basic Information

Item Value
RNA id XM_022677623.1
length 7005
RNA type mRNA
GC content 0.46
exon number 49
gene id smchd1
representative False

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 23190464 ~ 23250746 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCTAATTTTTAATCTTAGTGTCGTAGCTAAACGTTTCGTTTGTTGTCTTATCATCTCAGCTTATTTTAGTACTCGTGTAGTTGATATGGCTAGGTTGAACAAGAGACAcagttgctttttattttattagttttattcttATATATGCCCCTAACGTTGTTGTCAGTGCAAGTAGTTAGAGACTCCAGATGAGAATCTGGCAACCCTACCACTAGCAAACTAGCGCGTGGAGACTGACAACACTGTAGCTCCAGTGTATCACATGGTTCAGAGGTGTGGGAGGTGTAGGAAGCCTCCAGTACTCAACGCTGGGCACTGGATGTtcagctagctaagctaagccaGTCAATAACAGCCCGGATAAGCGCCGCTGTCCGCTTGTATGCCTGAGCGAGCATGTCGGAAGCGGAGCGGTGACGCGTTTCTCTCTCAGTTTCGCTTTGGTGGAGCGGAGACAGATATCAGACCTGAGACAGaggcagcagaaacagcagggCAGAGGAACATGGCGGACCTGGGGGCTCCCCGAGCTGAGCCCGAGCCTGACAACCGCTCGGTTTACATCTACGACTGTCGCCCGGAGAGCAGAGAGTCCTctgagagggagatagagatcAGCGGTAAAGACTTTACTCAATTCCTTCAGGCTGTCCGCAAGgaGTTTTCTATCACTCGAAAAGATGCTTTTGTACTCACTACCACAGATCGCAGGGAGATCAATAAAGACATTTATGGAGAACttgcaaatggcaaaacattaCACCTTCTACAGTCTGTGGATCAAGAGCTGACCAAGGCAACTCAAGAGCGAATTAATTATCTTCCACATTACCACACCATCGTGCAGAGTGGACAGTATGAGTACTATGCAAGTGAAGGACAGAAAGCACTACcctaCGCTTTTGCTGAGCTCATTGATAATGCACTTTCCGCCACTTCACGTAATCCTGGAGTCAGGAGGATTGACATCAGACTGTTGTTTGATGAGTCTCAAGGTGGTCCAGCTGTAGTGGTGATGGATAATGGTCGTGGGATGACCTCTAAAGAGTTAAACAACTGGGCTGTTTATCGCCTTTCTAAATTCAATCGAGAAAACAGCACTTTTCAGAGTGATCATTCTGGATATGTGCGTCCCACTCCAGTACCACGCAGTCTCAACAGCGACATCTCCTACTTTGGCGTCGGAGGCAAACAGGCCGTGTTTTATATCGGCCAGTCTGTACGGatCATCAGTAAGCCGGTCGGCTCTCCAGACGTACACGAGTTTGTCATGTCTAAAGAAGACTTTGAGcggaaagagaaaaacaaagaggaGATTTATTCAGGGATTATCCGCAACCGGAAGCCTGGGGACTGTTCTCATGTGAAAGTAGATGAAGAGCGGTTTTTGCAGTCTCTCATTCTGGAGGAGGAAGGCAAGGACAGCTTCACCGCAATAGTCATAAACAGAATCCAGCCAGAACATGTTACCTACCTCAGAAATGACTTCATCTTGTGGACAAGAGAGTTGGCGCACATCTATCATTACTACGTTCATGGTATCCATggaaatgacttaaaaaatgAGAAGAAGGCAGATTCTCCATCAAACATCGACATACAGATCTGTCTGCTCGAGCGTTCCCCTCGGTTACCAAAACTGATCAATCTGAGGGAAATCGATAAAGACATGCAGACTCTTTATATAAACTCCAGTGTGGCAGAGTTTGAGTTTAAAGCCAGTAAAGGGAGCGACGCCAGAGTAGAGGGACTGATCAGATATCATCCATTCCTGTATGACAAAGAAACCTACCCAGAGGACCCATACAACTCAACACCagtTGCAGAAAATGACGACGAtgactgttttatttttcaagCTGAGGGACGAGGAAAAAGACCCATTTTTGAGTGCTTCTGGAATGGACGATTAATTCCTTATTCTTCTGTCAATGAgTTTGAGTGGTGTGCAAAACCCAAGAAAATGTGTACAGTGCCTTTAGAATGCTACAACAGAATCTCAGGTGTTCTCTTCGCTAACGACTGTTTTCAAGTCAGCACCAATAAACTCACATTTATGGATCTGGAACTGCAGCTACGAGACAAAGAAACCATCTTTACCAGAGTCCTTAACAGCCAGgagCAGAGAGTGAAGATCAGTCGAGAATTCACGATTTGGTTAAAAGAATGTCATGAACGATTTGacaaacagGTGAAGTTCATTGGTTACCATGGTACAACAACTCGCACAGATGTCTCATCTAAGCGGCAGCAGTCGCCATGGGCTCGGTTCAAAGGCATCCATTGGGACGGCAAAGTCTACAAGGCTGGACAGCAAGTGAAATCAGTGAAAACTCAACCTATTCTGTTTGGCTCCATAGTTCAGTTTCTGCTCTATGGAGACCATGAGGGGGACGTCTACGCCACTGGGGGACATGTTCAGATTGCACTGGAACCGCAGGAACTGTATAATGAGGTTCGAATTATTCCAATATCCAAGATCGACAGACAGGCAACAGATTCTGCCATCAAGAAAAGCATTGCTGAAGAACTGGCCAAGCTTCCTGATCAGTTGAAGGTTTCATGGCCAGAAGGAAACCCGTGGCCTGACAAGGCTGTTCGTCCAGCTGGCACTCCTTTAgGTCCAATCCAAGTGCATATTCTGAATAAGAAAGGAGAGACGATGTCCCGGCTGCCGGTCTCCAACATCAACGCCAAAAAACTCCTGATGGAGCTGAAAGTCATCTGGCACTctcCTAAAGGGGATGTCCAGACAAACTCTCACATTTGCATGCACTCCACCAAGTGGGAGTTCTGGTTCAAAGTAATGGaaaACTTGAATAAATTGGGAAAGTACACACTTTGCTTGCAGACTTTGCTGAGTGATAGTGAGTCAGCTAGTGAGTGGGCTGGGAAACGTCTGCCTCAGTATGTGCTTCACTTCACTATTAAAGAAAGCAGTGCAGCATGCTTTGTATTGCGCTCAGTTCCCACGTCAGTGCAGGTGGGCGTGCCCTTCTCTCTGAACCTGGAATTTAAGGATGAATTTGATCATGTGACTCAGCCCCCATCTGACATCAAACCCCAGCTAGAGTGCAGTTCACTGCAGCTAAATTACGAGCAGACAGCTTTGAATGGAACTACATTTACCGTACAAGACCTGAGAGCCAAGGGGAAAGTAACAAACCAGCTGGAGAAGGTTCACACGGTGAAAGTCATCGTCCCAGGCCTCAAACAGGACTTCCAGTCTTTCCAGTTTAGTGTTCGTCCAGGTCCTCCACAACAACTGGTGGTTTTTCCTGAGAACGACATCTCTATAGAAAACGGATCACCAGCAGGATTTAAAGTGGAGGTTCACGATGAGTTTCAGAACATCACAACACATTCCAAACTCATCGTCCGCTGCCAGTTATTAGGAGCCCCTGATTTACCTGTGGATACTGTTGACTGCAGTAATACCGGCACAGGGGTGCTGCTCGCAAAACCAGTTCAGCTGAAGAATGTCACCACTGAGCAAGTCCTCACTGCCAAGTTTGGCATTCCTAACCAGAAGGGAATATCTTGTGTGGAGCGGAGTCTGCGCGTGCTGCCCAGCACACGTGTCTTCCGTGTGGAGATTTACAGGCAGGATTCGGATGATGTCATGTTGATTCAGAATCTGGAACGAATCAACTGGACAGCAGGAGACACACTCGGGAGTCTGCGCTTCAGACTGTATGATGAAGGAGGCAGGCTGGTGCCTTTAACACACAAACTTGCACATAATGTAAAGGTGAACTGGACTGCAGGCGTAAGGACAGCAGAACTGGCTAAGGGAAGACTTCCAAATGTTTCTGTTCCAACGAAAGTACAGAGAGAGCACTTCTATCAGGTGTCTTTTACGGATCAGCAGTCAGTTGAGACGTCCTTTTTCATAATCCCACGTCCAGATGAACCTGACAAACTGAGGGTCACTCTCAGAGAGAACACTGTGAAAATGGGAGAAACTCTATCAGAAAATATCTCCGTTGAGGTGGTTGATCAGTATGGTAATAAGACAGACACTCTGAATGCTGAGAACATCAAGACAGTCAGTGTTCACGCAGATGACCTGGATGTGTCCACCCTCAGTGTCGATTGGCAGgaAAGCTCAGGCACTGTGTTGGTGAGTGGTGTGCGCTTCACTGGAGGCTCACCGGGTTCCAGGGAGTTGTGCTTCAAGTACCAAGAATTTGAGGAGTTTGCCAGAGTAAAGGTCACTGCTGGACCCCCTGCTAAAATCACGCTGGTGGAAGCTCCAGAAATGCCGTTACATGTGTTAAACGGACGAGGTCTGGACACTCCGTTCCTGCTACAGTTATGTGACAAGTGGGAAAACCCTGTTCCAGATCAGCGAGTTGTCATAGCGATCAAAACGCTTTCAACACAGCTCAAGGTTAAATCATCAGTGATGTCCCGGCCGGTGGATCCAGACGGAAAGGCTTGCTTCAAATTGGAGATGGTGACGGCACCAAAAGGAGAGCATGAGCTGGAGTTCCGCGGATCCTTCAGTAGAAACAGTATTCCTGGTCCGGTGGTGAAGCTGAACGTGATGCCTGATCCCAACAACCCCGTCAAACTTACTGTGGAATATGATAATGAGGCCATCTTAATAGCAGGAGACTTTTTGCCAGAGTTTAAAGTGATggtggtctctgaagaaggTGGTCCGGTGAAGAATGTGAATCCAGCCAGTCTGACCATGCTGCTGTGGCAGGGTTTAGCCGCAGGAACCCGCCCTCCTCCTGAGGCAACAAATTTTAAGTGCAGTCAACAGGATTCGGACATCTTTTACTTCAGagacAAGGAGATTCCAGAACATGTAGGAAAATACATTGTGCAGTTTGTCTTCGTTGGAGAAAAAGGCAAGTTCCTCTGGAGCAGTCAGATTGCTCTGAAGGTAGTTCATGATAAGCCAGTGAGGCTTGTTCCAGAGTCTTCTCCTGCAACCCCCGTGGTCTCTAACAGCGATGCTGGTAATCGCACACTTCTGGACAGTTTATGTCTGAAGATTATGGACAAGTACAACAACCCTGCTGGTACGGGGAAAAACGGGCAGGTGGTTGTAACAGTGATCGGTGCTGCAGGAAGTAAAGCAAAAGATCTTCCTCTGTTTGAGAAGAAGGCCAAAAGTGTATCCTACAAACTCACAGAAGGAGAAGCCACCATCACTggcttGGCACTGATGGAGAACAGTCCTGGATGTGATGGAGCTGAGTACACACTGCAGTTCCAGCCGGTGATCGAGGGACCTGGACCCAGTCCTACCATCACTCCGTTTACATTACCTTTCAGGTTCTACAATGATGCAGAGAACCAGAAAGTCATGGCTGAGATGAGTAAAAAGAAAGATCAGCTCTCTCACTCTATTGTTCTGTACAAAGGCATATTAGACACCCACACGCAGCTGGCTTCTGAACTAGAAAGTCAGGTGCGCGATGCATCAAGCAGAGAGACTCAGTGCAAATCAGAACTGAGCAAAAGTGGTATAGATGTTTCCAAATTGCGAACTGTGTCAGCAGTTGACAGTTTGATTGCTGAAAAGAAAGCAGATATGGAGAAGATACAGAATGCACCTCGCCGAAAATGCACCATGCCTGATTCATTTAAAGGCAGTCCAGATGTGCTGggaaagATAGCACACCTGGCACAGGTGGAGGATGATGATGCAGCAAAGGTCATCTCCTGGCATATTCTTGGTGACATGGACTGTGTGGTTACAGTAACAACAGCTGCAGCAAAGAAAATCTATGATGACACGCAAGGACGACAACAAGTCATGCCCTTAGAGACAGTTTTCTGGAGACCAAATACCAGGCCTCTGCCTCACATCAGGAATGAAGAACCTTTATTTAAGCCGTTAGGAAACCCTGTGTTTGTCCGAGATCTGCTCATTTTTCCTGAGCATGAAGAGAACTGCAACAAGGTTTTTTCAACTGTTGTTGGAGACACAATATTGGTGGATGATCTGGACTCTGCTAATCATTACCGTAAGGGGGTGGTGCAGAATAAGGTGCAGTGTCCCACGCTGCTGACGCGTCAGGGTGAGCGGATTCGTGGTAATGGAAAGTTTGGGGGTCTGCAGAATAAAGCTCCTCCAATAGAGAAGTTGAGAGGACAGGTGTTTGGAGCACCTCTGCCTGAAGAATATCACACCATATCCAAACAGATAGagCTGCTGCAGCAGTACTCTGTGGCGGTACAGAAAGCGTCAGAGGTCCGAGCTGATTTTGACGGTCACATGCTTTACCTGAAGAGTCCGGAGATGAAGCAGAAACAGCGGGAGCTTCAGGATCAGGAGAAGACTCTAAAGGACATCGAGAAGAAActagCCAGCACTCCTGTACGCAGTTCTCCTGTTTCAGTAGCCAAACGAAACCTCCTAGAGGAGCCTGATGAGACCCTTCCTGCTAAAAGGATTCGCCGTAAAAAAAGAATCCTGGaTTCTTAGACAATCGTCTCAGACCAGCCTGCAAAATCATCTCTATTAAGTGTTTATCTGAACAGCTGCAAAAAAACTTCTTGTTTGGATTTTGGAACAAAAGACTTTTTTTCTTGTATGTTAAAAAGGGATCACCAATTTTTTAAAAGACTGTGAGGATTTTCTGTCCCACTAATACTACATACAGTAGTTGCTTAATTtctagcttttttattttattttttattattgcttgcCTTTTATAAAGATAACTATTATCACAGATTTCTAACgtaaaacattttctgtttgTATTTAATAGAAAAGGCAGCTCAAAAGTTATGGACTATGTCCAGAATGTGATTTCTATGtttctgttaaaaaatataatgtgtttgttttctatAATTGTTATCTCACagcactgttttttattttttaaatatatatttgttatctTACAGCACTGTCTTtttattcttcaaatatataaTTGTTATTTTACAGCACTCTCTTTTTATCATTTGAATATATAATTGTTATTTTGCAGCTTTTTTATCTCTGAATAAGATTTTTCTTATATCTgc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU194497 lncRNA upstream 1232 23187028 ~ 23189236 (+) True G143694
TU194498 lncRNA upstream 1898 23187028 ~ 23188570 (+) False G143694
XR_002650973.1 lncRNA upstream 5204 23181717 ~ 23185264 (+) True LOC111194181
XR_002650967.1 lncRNA upstream 15668 23172948 ~ 23174800 (+) True LOC111194176
TU194491 lncRNA upstream 16680 23170596 ~ 23173788 (+) True G143691
TU194479 lncRNA downstream 40566 23291312 ~ 23291924 (+) True G143684
TU194502 lncRNA downstream 42246 23292992 ~ 23293214 (+) True G143698
TU194503 lncRNA downstream 43320 23294066 ~ 23294388 (+) True G143699
TU194505 lncRNA downstream 44727 23295473 ~ 23295859 (+) True G143701
TU194506 lncRNA downstream 47064 23297810 ~ 23298390 (+) True G143702
XM_007230337.3 mRNA upstream 168056 23016781 ~ 23022412 (+) False adcyap1
XM_007230336.3 mRNA upstream 169114 23016781 ~ 23021354 (+) True adcyap1
XM_015606853.2 mRNA upstream 169114 23016781 ~ 23021354 (+) False adcyap1
XM_022677624.1 mRNA upstream 186474 22991462 ~ 23003994 (+) True LOC103031382
XM_007238909.3 mRNA downstream 4931 23255677 ~ 23290625 (+) True emilin2
XM_022677727.1 mRNA downstream 143464 23394210 ~ 23395111 (+) True LOC111194251
XM_022677648.1 mRNA downstream 184848 23435594 ~ 23442090 (+) True LOC103023765
XM_022678211.1 mRNA downstream 322057 23572803 ~ 23664047 (+) False LOC103024399
XM_022678212.1 mRNA downstream 344377 23595123 ~ 23664047 (+) False LOC103024399
trnaa-cgc_2 other upstream 125110 23065287 ~ 23065358 (+) True trnaa-cgc_2
trnat-cgu other upstream 125369 23065028 ~ 23065099 (+) True trnat-cgu
TU194024 other upstream 580021 22535685 ~ 22610447 (+) False G143324
TU194021 other upstream 580021 22591785 ~ 22610447 (+) True G143324
TU193826 other upstream 1316082 21870676 ~ 21874386 (+) True G143182
XR_002650977.1 other downstream 134036 23384782 ~ 23394167 (+) True LOC111194185
TU194568 other downstream 134422 23385168 ~ 23395240 (+) False LOC111194251
TU194571 other downstream 134422 23385168 ~ 23395240 (+) False LOC111194251
TU194570 other downstream 143540 23394286 ~ 23395240 (+) False LOC111194251
LOC111194174 other downstream 152942 23403688 ~ 23406894 (+) True LOC111194174

Expression Profile