RNA id: XM_022677625.1


Basic Information

Item Value
RNA id XM_022677625.1
length 5936
RNA type mRNA
GC content 0.42
exon number 23
gene id LOC103031382
representative False

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 22991462 ~ 23003994 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGTATTGCTGCAGACTGGAGCACCTCCAAATGGGAGGAGCATAACCTCCAAATGGGCGGCGCATAACCTCCAAATGGGTGGAGTTTATCTCCAAGTAGGATtgcgttttttttaaagacattttgtgCTCATTGTGACTGCAGATGGCTGACGGTGTCAGCCAGAGCCCGTTCTCTGGGTTCAGCATGGTGAGCCATGTGAGTGTTCGAGCTGATCATCTCAGTTTGGATGAGCAGTGTTCAAAATGTGGACTCTATCATTGTCCACTGTGCTCTACAGAGGTTTTTAAGCCTTCAGATCATTTCAATGCTACAAGGCACATCGAATCCCACAAAGGTCGATGTGTTTACTATGGAGGGTTCACAATCTACAAATGCCACCTGACTTGCAGAACAAGTCcacattttcactgtttttcttGTGGGAAAACAGTCATTAGAAAAATGTGCTATGTAAAACATCTTACATCATGTAGTCCAAATTCTCCCACTGAGGGACAAATGGCTAATTTTGCCAATCCTCCTGACACGCATAGACTCCTTTGTGCACCTTCATCTGCCTGTCCCTGCGTCCCTGCGCCTCCGTCTGTCATGCTTAAAGACTTCCCTGCGCCTCCATCTGCCGAGCTTAAAGACGTCCCTGCGCCTCCATCTGCCGAGCTTAAACACCTACCTGTGCCTCCATTTGCCGAGCTTAAACACCTCCCTGTGCCTCCATCTGCCCAGCTTAAACAAGTCCCTGTGCCTCCATCTGCCCAGCTTAAACAAGTCCCTGTGCCTCCATCTGCCCAGCTTAAACACCTACCTGTGCCTCCATCTGCCGAGCTTCAACAAGTCCGTGTGCCTCCATCTGCCCAGCTTAAACACCTACCTGTGCCTCCATCTGCCGAGCTTAAACACCTCCCTGTGCCTCCATCTGCCGAACTTCAACAAGTCCCTGTGCCTCCATCTGCCGAGCTTAAACACCTCCCTGTGCCTCCATCTGCCCAGCTTAAACAAGTCCCTGTGCCTCCATCTGCCCAGCTTAAACACCTCCCTGTGCCTCCATCTGCCCAGCTTAAACAAGTCCCTGTGCCTCCATCTGCCCAGCTTAAACAAGTCCCTGTGCCTCCATCTGCCGAGCTTAAAGACGTCCGTGTACCATCTTCTGCCGTGCTTAAGAACGTCCCTGCGCCTTCTTCTGCCATGCCTAAATTTAGTTCTAGCATAACGAAAGAAAACTCTGCAGATGTCCATAGAGCACCTATAAAGCATTTGGCAGCTCTTCCTTCTGCACAACATGCCAAACAGCCTCTGAAGATTCAGAATGttcaaaagaaaatgaattgcCCCCATTGTAACATCTTGCTGTATTTCAAAAATTTTAAGAAGCACCTCAAAAGGAAACATGGTACAATGGTTAAGGACATAACTGCAGAGACCCACCTTTCCAGTCAGTGTGTTGACTCTGAAAGAGGAATCTTTGCTGTTACGAAAGCTTTCCATGGCCCTCCAACCCCTGTTCATGTTATACAGAAATTGTGGGGCTCAAATCAGAAGAGTATATGTGAAGTTGATGAGTGCAATGTGAACATGGATGTGGCTATCCGAAGTGGGCATAAAGTGTTTCGTTGTTGCCATCAAAGATCACTTGACTACTGCTCTTTACATGGCACTAAGGAAGATGAGGACTTGAAAGAAGAGGTATTAACAGAAATGGTTTCAGCCAGGTGGTTTGGTGAGTCCAAGAAACATCTGTGTCTTCAGAGGAAAAAAGAGGCAGCCGATAAAGGAGCTCCTTTGGCCGTGTCCATAAACATTGGTCCACCTAAAAAGCACtatgtttctgtatttgaaaATAAACTTTCTTATTATAGTCGACTCGGGCGAGTGATGGTGTTCTACGatgcacagaaaaacagctggCATTGTCCCTGTGTTAGAGCAAAAGTGTCCTGTCCACATAAATATATAGCTAAATGGTTATTGTTTCAGACCAAAAAACATCTGTTTCGATCAGTACGGTCAACAGAACCATTGGATGACCGGACAGCCCCCGAAGTTCAAGAAGAGGAAAATGGCAAAGCGGAGAGTTTTCTGTATCCACCTCAAGGCAAACAGTTGGAGCGTGTTGTTAGATACATCTTGCATAATAAAAAATTGCCAGTTGAGCTTCCTGAAGATTTAAAAAAACCAACCACTGATGCACTTACTTCTCTAATTCCCTTTGAAGAGTTCTGCACTGAATGCCATGACCAAGTTCCTTTGAGTGACCCCATTCTTATAACAACCAAGGCAAAAATGGTTACACTTACCAGTGTATTTGAAGGTATATCTACGTTTTGCAAGAGATGCTACAAGTGTGGGATGGTTTACAGATACCAAGAATGGTGCCAGGGTGTTCATAATTATAATGACCACATCATACTTGATCTTCATTTGTGTCTCTATTTGAGAGCCTCCCTTCAGACACATAACGCCACAAGCAGAGTCTTTGAGGCAATGGAGATGACATCAGGTGTAAAGCTGCCACCTCATAACAAACTACTTCATGCATATCTTCAGTTCGAGGCATTAACTCAGCATGAGTATACGTATGCCTGCGTCAAATGTGGCTATTACCCAGCAGTCGTAATAATGGATCTTCACAAAAAGGGCGTGTTTAACATGCCAGTAAGTGAGATCCCAGTACCAGTTCAGACCTACAATGGGCAAGTCAACATGACCGAATTCTGGAACTCTGTAGCACTGGAGATGGTTGCCCATGGATTTGTTTCTAGCACTCAGCAGAACCCTTTTGCTGTCCATCCAACCTTTTCATATTGGGCACCATGGATTGGACCTCACACGAGAAAGACTGATGATGTTCTCAATACAGAATGGGAAAAAGTGCATCATTCTGCAAAGCAAGCAGAAAGGGCAGATTTGGATGTTTCAGAGGACCGGCTTCTCAATGAAGTCTTGAACCTAAAAGTGGAGGATGTAAGAAAGCTATGCAAAGTGAGTGGTGTAGATTCTTCAGGTTCAAAAATTGACCTTGTTCTTCGACTCCGTGAAGAAATCAAAAGCAGGAATGCTTACAACAAAATATTTGAAAAGGTTTGGGGAGCATCAGGTGGCTGGGCTACTATCATGTGTCCTTGTGGTGTTGTCTATAGCTTGAAATTTAATATGAGAGCTGAAAGTCCAAGAGATTACATGGATTTATTACTCTCCTGGAAACATATGCCCAATGTGACTGTGTATGACTTTGCCAGGGGGTTGGCAACCCATGGGAACTTGAGATATCCAGCAGTGTTGCCATTTACTCCAAATGAGGGAAGACTGTTAAAGCCAACAGAAGAAAGCATTCAGCTTGCAAAAGAAGGAAAAATCAAAGTGCATCTTCCATGgctcaaagaaaaaaagaagattcCAGATGATTGTGGTCATCCCATAACTGGTTCTGCAGATCACTATGTTTTATACGACACCCTTCACGAATCAAACACTAAAGATAGTAAGGATGTTCTCAGAAGAATCGCTCTTGTCCCCGAGCTCGCAGGATGGATGAATAGCCAAGTCGCTGAGCAACTTTTTGCACAAATGGAAAGGaacaactattttttaaatatgatgacTCCAAGTGTGCAGATCTTCCTAATCAGAAATATTGTCCATCACAAGAACCAACTATTGAACAAACATATAACAGAAAAGATTCAAAAAGCAATGGGAAATTTCAACGTCACTTTAAATGCATTTGGCCAAGCAGTCATATGTAAGGAAGATTCATCAGTGAGTAGGAGTTCAAGTGATGttgcaacacaaaaaacattgtCTGAGGATCCAGTCAAAATTCCAGTGACTGCTGCACACACGTTCACTGGTACCAATTCTTGGGCACCTCAGGATATGCTGCCAGTATGGGGTCAGCCACTACATCCACATCACCAGAAAATgCTGACATATGTCCTGGACCCCATTAAAGATCCAAATGAACATATTGCCGGTGTAGGAACAACTATGCTGACGCGGTCAGATTTTTGGACTTTAGGACTGGCCAATGATCTTGAGGCGACGATTGCAAATTGCTGCTTTCGAGTCATAGAACACCTCGCTTTCCAGCAGGacataaatgtgtttgttgCAAATTGCTACATAGTTGCGACTTGGATGCCACCCCTTTGTGCAGAGCCACAGTTGTCCTTTCCTGCTGATATTGCCCAGAAAGACGTTGTGGCCTTTCCCTCTTGGATGTCTGGACACTGGATGTTATGTaTCTTGAAACCAAAGGAACGAGAAATGTATTTTCTTGACCCTATTGAGCAGTCTGCATTTGGACAATACATTGCCACATTCAGaaaaatagcaaaaatgatTGATGACAAAACTTGGACCGAGAGAACTGCAGATTCATTTGAGGAAATCCCAAGACAAAAAGGAGGCAACAACTGCGGTATATATGTGCTGATGgaAGACATGCCTTTCATCAGAAGATGGTGGTGTACTCTGCTGATGACTAACTTCGCTGTGCAAATGCCAAGATGTAAGTTATCTGAAGGAGAGGATGGAAGTGATGAGCCTCCTTTTAAGAAACAACGCCTCCAGGAACAATCAGATTGCAGAGGTGCAAGAAAACCTGAGGACTCACAGGAGAATGCAACAATCCTGCAGATCCCAAATGAAATTTTACAAAGGATCCTCCTGGAGGTGGTTCTAAGTCAGGGTGATTCTGCATACTTGAACATATCTTTGGTATGCCGGAGATTCAGGGACATTGTTGGACATCCAGGATTTAAACAAGAGGCTCACTTTTCCTGGCTTGACAGTGTTGTCAACTGGAACAACTTTTCAAAAGAGTTCTGTGAGGAATACAGGGTGAATTACACCATCTCTGAGTGCTTCACCTGCAAGACCCTTTTCAAGTCATGTCCACCCGGCTACAAAGGAGGAGGCAAACGAGGAGTGTTGGAGGGGTTTTATTCCACTGTGGACTGGCCAGATTTTTGTTCCCAGGACTGTTTTTGTGTGTCAGGGGGACAGTTGTAGCTTCTTTAACCAGTGTGCCGTGAGGTATTTTAAGGTGTGCCATGGAACATGGTCaataaatttattttcttttgtgtcAATGTGTTAAcattttagtgatctacagtatatatgtgAGCATATTTTGgcaatgaaataaatatttttgctgAGAAGTATGTTGGTGTAATAtgcttatttgttattttagtatttGGAGGTTGTTGTACAACTCAGGTTCACACCATTAGTTAATATTTCTACTTAATGAAacagaaataatacaaaaaatattaaattatattaagccATGTTTAATCATAGATTTGTTTATGTTCACTACTCCCACTCCTGGGCGTTGTCTGCATTCTTACCCCTGGACACTAGCCACTTGCTACTAAATACaacatttaaatgattattCAGTATTGTCATATACCTGCACCTCTTGCACATTGTTTATTCATCACTGCAGtgcaattctttttttaaattattatttcctATTTATAATCAACAGGGCTATATGCAGATgtttataaagattttaattatatacattCATTTTTGTAATAAGTTATGTTTTTCTAtgttcttatcttattttaggtgttatattacttttatagaTATAGTTAATTATaatttgtactttattttaattgtatgtacagtacatatAAATGTCTACAAAATAATTCAAACGCTGATCAAGATGGCCATAGGACTTTCAGGTAGGAGGTGGGCACCCAATGATGAGACATCAGTCTCAAACATTCTGCACATCTAAGTAAGGTGACATGATAAAATTAATACTAATACATCTCAACTAGTGGGTCAGGACTGTTTGtaaagaataaattaattataaaatataattcggcagaaaatctgaaaaaggtTAGGTAAAAGAATATTGTTctgtagctttatttatttatttatttg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU194396 lncRNA upstream 31242 22958268 ~ 22960220 (+) True G143627
TU194393 lncRNA upstream 33251 22956811 ~ 22958211 (+) True G143626
TU194390 lncRNA upstream 36863 22951313 ~ 22954599 (+) True G143623
TU194387 lncRNA upstream 49093 22939934 ~ 22942369 (+) True G143621
TU194100 lncRNA upstream 192634 22754052 ~ 22798828 (+) True G143382
TU194422 lncRNA downstream 64380 23068374 ~ 23069875 (+) True G143642
TU194464 lncRNA downstream 111043 23115037 ~ 23115258 (+) True G143674
TU194465 lncRNA downstream 126292 23130286 ~ 23134140 (+) True G143675
TU194478 lncRNA downstream 142057 23146051 ~ 23179684 (+) True G143683
XR_002650974.1 lncRNA downstream 158882 23162876 ~ 23164415 (+) True LOC111194182
XM_007230333.3 mRNA upstream 52203 22934665 ~ 22939259 (+) True tyms
XM_007230330.3 mRNA upstream 58751 22921010 ~ 22932711 (+) True clul1
XM_022677651.1 mRNA upstream 94471 22893635 ~ 22896991 (+) True LOC111194171
XM_007230328.3 mRNA upstream 121322 22854584 ~ 22870140 (+) True hacd1
XM_007230323.3 mRNA upstream 272897 22703645 ~ 22718565 (+) True ncf2
XM_007230337.3 mRNA downstream 12787 23016781 ~ 23022412 (+) False adcyap1
XM_007230336.3 mRNA downstream 12787 23016781 ~ 23021354 (+) True adcyap1
XM_015606853.2 mRNA downstream 12787 23016781 ~ 23021354 (+) False adcyap1
XM_022677622.1 mRNA downstream 186470 23190464 ~ 23250746 (+) True smchd1
XM_022677623.1 mRNA downstream 186474 23190468 ~ 23250746 (+) False smchd1
TU194024 other upstream 381015 22535685 ~ 22610447 (+) False G143324
TU194021 other upstream 381015 22591785 ~ 22610447 (+) True G143324
TU193826 other upstream 1117076 21870676 ~ 21874386 (+) True G143182
TU193751 other upstream 1344757 21645905 ~ 21646705 (+) True G143122
TU193733 other upstream 1390097 21598682 ~ 21601365 (+) False LOC103047556
trnat-cgu other downstream 61034 23065028 ~ 23065099 (+) True trnat-cgu
trnaa-cgc_2 other downstream 61293 23065287 ~ 23065358 (+) True trnaa-cgc_2
XR_002650977.1 other downstream 380788 23384782 ~ 23394167 (+) True LOC111194185
TU194568 other downstream 381174 23385168 ~ 23395240 (+) False LOC111194251
TU194571 other downstream 381174 23385168 ~ 23395240 (+) False LOC111194251

Expression Profile