RNA id: XM_022677676.1


Basic Information

Item Value
RNA id XM_022677676.1
length 1760
RNA type mRNA
GC content 0.41
exon number 13
gene id LOC103033974
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 24895613 ~ 24911351 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCCAGAATGGGTGGTCCCAGTTTGAATCTCGTTGTTTCAGGGTCTTCACCTCAACAACAAACTGGGCAGCTGCTGAGCAAAACTGTGTGGCTATGGGAGGACACCTTGCATCTGTGCACAGCAGTGAAGAGTACGCCTTCATGTTAAATTTACTGCTGAGTGTTGTAAATAGTGCAGCATGGATAGGTGGCACTGATGCTGCACAGGAGGGAGTGTGGGTGTGGACAGATGGGTCAGCATTTAATTACACTTACTGGGAAAGTGGGCAGCCTGACAATTTCATAAATGTTGAGAACTGTATGATGATGAATTGGGGAGCTGTGAATTTCAGGTCCTGGAATGATGCCCGGTGTCAAGAGAATTTTCCATCAGTTTGTGCccTGATAAATGGAACTTCTCATTCATCTTCACCAGagGTATCGTTTACATCAACTACTGTTCCCTCGAGTGATACTTCCACCACTGCTGTTCCCTCAAGTAATACTACTACAACTGCTGTTCCCTTGAGTAATACTACAACAATGGCTGTTCCCCCAAGCAATACTACTACAACTGCTGTACCCTTAGTGTGCCAGAATGGGTGGTCCCGGTTTGGATCTCGCTGTTTCAGGGTCTTCACATCATCAACAACCTGGACAGCTTCTGagcaaAACTGTGTGGCTATGGGAGGACACCTTGCATCTGTGCACAGCAGTGAAGAGTACACCTTCATTCTAAACCTACTGCTCAGTGTTACAAACAATGCAGCATGGATAGGTGGCACTGATGCTGCACAgGAGGGAGTGTGGGTGTGGACAGATGGGTCagcatttaattacagtaactgGGATTCTTGGCAGCCTGACAATTACCTGAATGTCGAGAACTGTATTCTAATAAATTGGGGAGGGGCATGGAATGATGGAGCCTGTTATGGTTATTATCCATCTGTTTGTGCCcAAACATTATACAAAAGTAATACAACCACGACAACTGTTCCCTCCACTACTGTTTCCTCTACTTCTGTTCCCGTATCAGTGATTAACGGAACTTCTCGTCCATCTTCACCAGAGAATGTGATGGTCATGCGCCTCAAAGTGAATTCAATGAAAGACTTGTTGGCAGCTAACAACTCACAGATACTCCTCCAACAGATCAAAGGGATGCTGACTGACGGAGGAATTCCCAATAATGCCACACTTCATTTGAGATCCATTAACAGGAAGTTGCCCTAGAAGTTGGAGGGTttggaaacattaaataaaatgttgcctattaaatatataatgaattGGATGTACTGTTCTTCCTGGAATATATACTGTAATCTACTTTACTGTCAAGTAATTAAACAAACTTCTGaattaaactaaagaaaaaagcaCATTAGTGACATTTACAAGCAGTGAACTGTGAATGCTACAACACTCCTGGCCATAAGGACATATTACAGTGTATTCACAAAGAGTTTTTGGGCCATACATCTATTCTTGCTTACTTATTGTACCTGTTTTTTTAACTCTTCATGATTCTTTCATGGTTCATTTTCTGATTTTCAAAGCACTAATGAGCATACAGTAGCTTTGCAATTATTAAAGTATCTATACcctttgaactttttcacattttgtcactatACAACCAcagatttaaatgtattttagtgaGATTTTAactggaacaaaaatgatacatggttttcatcTTATAAAAATCTGTAATGTATGACATGCAAAAATGTTCAGCCCCTTTcatccctaaataaaatccagtgcaatcta

Function

GO:

id name namespace
GO:0043292 contractile fiber cellular_component
GO:0044449 obsolete contractile fiber part cellular_component
GO:0036379 myofilament cellular_component
GO:0005861 troponin complex cellular_component
GO:0005865 striated muscle thin filament cellular_component
GO:0030016 myofibril cellular_component
GO:0030017 sarcomere cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
ko04260 Cardiac muscle contraction
ko04261 Adrenergic signaling in cardiomyocytes

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU194996 lncRNA upstream 18876 24874314 ~ 24876737 (+) True LOC111188189
TU194993 lncRNA upstream 44487 24850890 ~ 24851126 (+) True G144113
TU194906 lncRNA upstream 79529 24815864 ~ 24816084 (+) True G144038
TU194880 lncRNA upstream 205438 24689795 ~ 24690175 (+) True G144014
TU194864 lncRNA upstream 293211 24557282 ~ 24602402 (+) False ppp3ca
TU195027 lncRNA downstream 6335 24917686 ~ 24917987 (+) True G144125
TU195034 lncRNA downstream 24474 24935825 ~ 24936380 (+) True G144132
TU195036 lncRNA downstream 25064 24936415 ~ 24936800 (+) True G144134
TU195043 lncRNA downstream 47360 24958711 ~ 24959188 (+) True G144139
TU195074 lncRNA downstream 164945 25076296 ~ 25080337 (+) True G144160
XM_022678252.1 mRNA upstream 21385 24856772 ~ 24874228 (+) False LOC111188189
XM_022678249.1 mRNA upstream 21385 24856772 ~ 24874228 (+) False LOC111188189
XM_022678250.1 mRNA upstream 21385 24856772 ~ 24874228 (+) False LOC111188189
XM_022678253.1 mRNA upstream 21386 24856772 ~ 24874227 (+) False LOC111188189
XM_022678248.1 mRNA upstream 21387 24856772 ~ 24874226 (+) False LOC111188189
XM_022678328.1 mRNA downstream 22020 24933371 ~ 24949400 (+) True LOC103047006
XM_007255706.3 mRNA downstream 95671 25007022 ~ 25037257 (+) True LOC103032175
XM_015607450.2 mRNA downstream 95671 25007022 ~ 25037257 (+) False LOC103032175
XM_015607449.2 mRNA downstream 95690 25007041 ~ 25037257 (+) False LOC103032175
XM_007255705.3 mRNA downstream 140684 25052035 ~ 25073701 (+) False LOC103031648
XR_002651001.1 other upstream 1060 24892992 ~ 24894553 (+) True LOC111194253
TU194997 other upstream 23864 24857006 ~ 24871749 (+) False LOC111188189
TU194884 other upstream 184080 24707083 ~ 24711533 (+) True G144017
TU194671 other upstream 979531 23827948 ~ 23916082 (+) True G143836
LOC111194174 other upstream 1488719 23403688 ~ 23406894 (+) True LOC111194174
TU195051 other downstream 87422 24998773 ~ 25004171 (+) True G144146
TU195235 other downstream 464647 25375998 ~ 25378765 (+) True G144270
TU195258 other downstream 560772 25472123 ~ 25474694 (+) True G144290
TU195320 other downstream 741655 25653006 ~ 25654250 (+) True G144333
TU195371 other downstream 875386 25786737 ~ 25788842 (+) True G144372

Expression Profile