RNA id: XM_022677706.1


Basic Information

Item Value
RNA id XM_022677706.1
length 1497
RNA type mRNA
GC content 0.46
exon number 8
gene id LOC103039371
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 11344591 ~ 11371098 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGTTCATGAAACCCTCAGTGTTGTGAACAGTTGAGGTGCATAGTATAGGGAAGAAAATGAAGCTGCTTATCATCATACATGTATTTATCTTTTCTCTGAGTGTGGAAACTGTGCTGGGACTGACATTGGAGCAACCTGAACTCTCCTGGACCAAGCCAGAAGGCAAAACTCTTTACATCGACTGCAAGGTCACTGATCTGGGAAGTGGCAATAATGTTCACTGGTACCAGCAGAAAGACGGTGAAGCTCTCAGAAGGATCCTGTACATCAATAATGGTGGCACTACCAAGACGCTCGATCCCAACCATCCAGAAAAAGACGATTTCACCATGTCAGAAGGCACCTATAAACTAAAGGTGAAAGCAGTGAAGAAGATCCACGCAGCAGTGTATTACTGCGCCTGCTGGGACGGCCACAGTGACAACAATTACTCACATCCTGTACAAGAACTCTGTCTGTTTGTTATCTTATCTAAAGAGCATTCTCTGGGGGAGAGGTCAGGAGGCCTGGGGCCAAACAAAGTTCTAGGAGTGGGAACAGGGGAGTGCGGCGTTTCAGCCATGGGAATCACGAAGAGTGGCGTCTCAGCCGCGGACATCAAAAACATGAGCACAGGTGGGAAACAGGGCAGGGACAGGTTGGTTAAGAGAATATTGGGGagtaaacagcatcatgaagtccAAAGAACTTACATCCTGAACAAGGAGAGCACAGATCAGAGAcacagccaagaggcccatggtgacTCTGGACGAaatgcagagatctacagctcaGTGAAAGTCTTTGGATCAGGTACAAGACTTTATGTGACAGACAAGAAAATCAAACCCCCTGAACTGGCTGCGTTCCCAATATCCCCCAGTGAAGGGAATGGGAAGCGAGCGCTGCTGTGTCAGGCCAGAGGCATGTATCCAGACCTGGTGAAGTTCATGTGGAAGGATCAAGCTGGGAATGAGGTGAAGCTGTCAGACAcagaggagctgctggagcagagAGACGAGGGTCAGGAGGTCAGAGTGACCAGCATGCTCATCATAGACCAACAGAAAGCACGATCTAACACCTTCACCTGCTCCGTCCAACATGAGGATAAAGTCGACAACATCAAAATCCCAGCAGATAAAGCTGTGGATGCCTCTGACTATGGTCCTGTTCCATCCTGCCCACCCccaaaacaagaagaagaagagaaatatgGTTCGTTTGAGCTCATCCGTCAGCTGAACCTGTTCAATCTGACCTACGTATCTCTGCTTGTGAAGAACGTGTTGTATTTTGGTGGTTTGTGTTTCTTACTGTACAAGAGGAGAGACAGAACCATTACAGGCAGTCCAACACCAAACCAGGGAAAATGAAGGGGTGctattttaaacatgtatttctttgttttcttcctttttggTTTGTTAAGATTTTGTTTCAGCAGTAAAGCAGTTGATTCTTTAAATGTGTAATGATGTGTTACACAATGTTAAAAtatacctgtaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU190315 lncRNA upstream 215682 11127288 ~ 11128909 (+) True G140563
TU190306 lncRNA upstream 340065 11003817 ~ 11004526 (+) True G140556
TU190298 lncRNA upstream 365501 10978574 ~ 10979090 (+) True G140550
TU190290 lncRNA upstream 395106 10949255 ~ 10949485 (+) True G140543
TU190262 lncRNA upstream 586121 10758255 ~ 10758470 (+) True G140516
TU190475 lncRNA downstream 72743 11443841 ~ 11444206 (+) True G140670
TU190439 lncRNA downstream 80921 11452019 ~ 11455807 (+) True G140644
TU190476 lncRNA downstream 83472 11454570 ~ 11454829 (+) True G140671
TU190441 lncRNA downstream 84739 11455837 ~ 11478740 (+) False LOC111194237
TU190487 lncRNA downstream 129958 11501056 ~ 11517675 (+) False G140676
XM_022677705.1 mRNA upstream 13931 11319770 ~ 11330660 (+) True LOC103038536
XM_015603253.2 mRNA upstream 36361 11205550 ~ 11308230 (+) True LOC103038209
XM_022678011.1 mRNA upstream 36361 11205550 ~ 11308230 (+) False LOC103038209
XM_022678007.1 mRNA upstream 593916 10683596 ~ 10750675 (+) False LOC103039003
XM_022678006.1 mRNA upstream 597361 10683588 ~ 10747230 (+) True LOC103039003
XM_022678012.1 mRNA downstream 46793 11417891 ~ 11426827 (+) True LOC111194306
XM_022677707.1 mRNA downstream 62453 11433551 ~ 11435570 (+) True LOC103030163
XM_022677709.1 mRNA downstream 110651 11481749 ~ 11493706 (+) True LOC103022687
XM_022678014.1 mRNA downstream 150342 11521440 ~ 11530907 (+) True nol7
XM_007232509.3 mRNA downstream 205014 11576112 ~ 11607386 (+) False retreg1
LOC103039058 other upstream 6109 11337961 ~ 11338482 (+) True LOC103039058
LOC111194305 other upstream 30217 11313533 ~ 11314374 (+) True LOC111194305
TU190266 other upstream 545700 10798545 ~ 10798891 (+) True G140520
XR_001518341.2 other upstream 901224 10427266 ~ 10443367 (+) False sppl2b
TU190105 other upstream 944615 10395520 ~ 10399976 (+) True G140402
LOC103029197 other downstream 7024 11378122 ~ 11378859 (+) True LOC103029197
LOC103029510 other downstream 8884 11379982 ~ 11381020 (+) True LOC103029510
TU190456 other downstream 9000 11380098 ~ 11383505 (+) True G140659
TU190458 other downstream 9000 11380098 ~ 11383505 (+) False G140659
LOC107196916 other downstream 10611 11381709 ~ 11382709 (+) True LOC107196916

Expression Profile