RNA id: XM_022677707.1


Basic Information

Item Value
RNA id XM_022677707.1
length 735
RNA type mRNA
GC content 0.45
exon number 3
gene id LOC103030163
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 11433551 ~ 11435570 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATGAATGCAGCTGTGTTTGTAGTTCTCTTCTCACTGATCACAGTGGGAACTCTGGGACAGACTGTGGAGCAAACTCAGCTTTCCTGGACAAAACAGGTGGGCAAAAGAGTTTCTATCAGCTGTAAAGTGACTGAACTTCAGAGCTTCAACTATGTTCACTGGTACCAGCAGAAAGACGGTGAAGCTCTCACAAGGATGCTGTATGTTAATGCTGCAGGAACGAGTCCTGTTTACAACCCTGACCATCCTGAAGCAGAACACTTCTCTGTGAGGCTCGAGGGAGTTACGTATGTTCTGAAAGTGAGCGCAGTGCAGATGATCCACACAGGTGTTTATTACTGTGCCTGCTGGGATAGAAGCAGCCACAGATGGTTCATTTATAGTGTAATATTGATTACAGTGGGAACGTTGGGAGTGGAAGTGGAGCAGAATGAACTCTCCTGGACAAAATTACTGAACAAAAGAGTTGAGATCCAGTGTAAAGTGACGGGGCTACAGACTAGCTATGTCCACTGGTACCATCAGAAAGACGGTGAAGGACTCACGCGGATACAGTATGTTAATGAAGCCGGCAATAACTTTGTTCAGAACTCTGAATTCTCTGTGAAGAAAAAAGGTGAAAATTATGATCTGAAGTTGAATGAAGTGAAGAAGAGCCACGAAGGAGTTTATTACTGTGCCTGCTGGGATAGCAGTAGCCACAGTGACTCAAACTGCTCACATCCTCTACAATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU190315 lncRNA upstream 304642 11127288 ~ 11128909 (+) True G140563
TU190306 lncRNA upstream 429025 11003817 ~ 11004526 (+) True G140556
TU190298 lncRNA upstream 454461 10978574 ~ 10979090 (+) True G140550
TU190290 lncRNA upstream 484066 10949255 ~ 10949485 (+) True G140543
TU190262 lncRNA upstream 675081 10758255 ~ 10758470 (+) True G140516
TU190475 lncRNA downstream 8271 11443841 ~ 11444206 (+) True G140670
TU190439 lncRNA downstream 16449 11452019 ~ 11455807 (+) True G140644
TU190476 lncRNA downstream 19000 11454570 ~ 11454829 (+) True G140671
TU190441 lncRNA downstream 20267 11455837 ~ 11478740 (+) False LOC111194237
TU190487 lncRNA downstream 65486 11501056 ~ 11517675 (+) False G140676
XM_022678012.1 mRNA upstream 6724 11417891 ~ 11426827 (+) True LOC111194306
XM_022677706.1 mRNA upstream 62453 11344591 ~ 11371098 (+) True LOC103039371
XM_022677705.1 mRNA upstream 102891 11319770 ~ 11330660 (+) True LOC103038536
XM_015603253.2 mRNA upstream 125321 11205550 ~ 11308230 (+) True LOC103038209
XM_022678011.1 mRNA upstream 125321 11205550 ~ 11308230 (+) False LOC103038209
XM_022677709.1 mRNA downstream 46179 11481749 ~ 11493706 (+) True LOC103022687
XM_022678014.1 mRNA downstream 85870 11521440 ~ 11530907 (+) True nol7
XM_007232509.3 mRNA downstream 140542 11576112 ~ 11607386 (+) False retreg1
XM_007232510.3 mRNA downstream 156243 11591813 ~ 11607386 (+) True retreg1
XM_022678016.1 mRNA downstream 208466 11644036 ~ 11655408 (+) True LOC103030795
LOC111194235 other upstream 4180 11428868 ~ 11429371 (+) True LOC111194235
LOC103029835 other upstream 27220 11405424 ~ 11406331 (+) True LOC103029835
LOC111194198 other upstream 32181 11400637 ~ 11401370 (+) True LOC111194198
LOC111194199 other upstream 34548 11398281 ~ 11399003 (+) True LOC111194199
LOC111194233 other upstream 37928 11395105 ~ 11395623 (+) True LOC111194233
LOC103030487 other downstream 2851 11438421 ~ 11438953 (+) True LOC103030487
LOC111194236 other downstream 14804 11450374 ~ 11450943 (+) True LOC111194236
LOC111194307 other downstream 16365 11451935 ~ 11452606 (+) True LOC111194307
LOC111194237 other downstream 19915 11455485 ~ 11456010 (+) True LOC111194237
TU190829 other downstream 802418 12237988 ~ 12240625 (+) True G140931

Expression Profile