RNA id: XM_022677716.1


Basic Information

Item Value
RNA id XM_022677716.1
length 684
RNA type mRNA
GC content 0.43
exon number 4
gene id LOC111194243
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 15367518 ~ 15375404 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATGATGCAGTCCAGCTCTGTGCTGTTGTGTGCTGTGTTTATAACCTGCCTCTGTTACTGCGACTACAGACCAGACTTTCACGTAATTCAGACTCCATCTGAAGTCACGGTGAAGGATGAGGACAGTATGAGCATCTTCTGCTGCTGGAATAAAACCATCCTTAATGTTAAAGTGAAATTGATTAAACCAAACCAGAGTAATAATTATCTTTatccaacaaaaataaatagtacCTGTTCAGAGTTCTCTATAAAAAACGCCTGCATGAATGATACTGGACTGTACATCTGTGAAGTTATACAAGACATCCCCAGACTGGATATTGTGAAAGGGAATGGGACGACTGTGACGCTTCAGGAGAAAAACAagaATAAAAAGTGTAAAGACTGTTTTCTGGATGACGTCCTCATCTACATTCTACGGTGCCTGCCCTTCATCACTCTGCTCTTAGTGATGTGTTGTTTCAACCGATACACCAGCAAGCGAACACGGCCCAAAACAAGCAGACAGAATATCCTCAACCCAGAAGAGCAGGAGGGAGTGCTGGAGGAGGAGTATGAGGAACCAGGAGAAGAACCTTATCTGAATGAAGAACTGATGGAAGAAGGAGAGTGGAGAGAAGTGGAtgcagaaagaggggaagaACTAGAGCCagaagagagacaggaagaacAATTCTggtga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU192026 lncRNA upstream 103838 15262792 ~ 15263680 (+) True G141795
TU192018 lncRNA upstream 129332 15223590 ~ 15238186 (+) True G141790
TU192016 lncRNA upstream 144208 15218508 ~ 15223310 (+) True G141788
TU191994 lncRNA upstream 157900 15154345 ~ 15209618 (+) True G141771
TU192006 lncRNA upstream 183468 15181633 ~ 15184050 (+) True G141779
TU191953 lncRNA downstream 13383 15388787 ~ 15401904 (+) False G141754
TU191949 lncRNA downstream 17057 15392461 ~ 15401904 (+) False G141754
TU191952 lncRNA downstream 17057 15392461 ~ 15401904 (+) False G141754
TU192050 lncRNA downstream 25570 15400974 ~ 15405120 (+) True G141814
TU192077 lncRNA downstream 131946 15507350 ~ 15538748 (+) True G141840
XM_007236091.3 mRNA upstream 1187 15322011 ~ 15366331 (+) True LOC103042634
XM_007238480.3 mRNA upstream 540455 14818945 ~ 14827063 (+) True LOC103038739
XM_007238479.3 mRNA upstream 550122 14812279 ~ 14817396 (+) True LOC103038426
XM_007238478.3 mRNA upstream 582843 14779181 ~ 14784675 (+) True b4gat1
XM_022678085.1 mRNA upstream 595517 14759152 ~ 14772001 (+) True LOC103034986
XM_007236093.2 mRNA downstream 561 15375965 ~ 15378535 (+) True LOC103043145
XM_015602108.2 mRNA downstream 4274 15379678 ~ 15384906 (+) True LOC103043450
XM_007236094.3 mRNA downstream 4274 15379678 ~ 15384906 (+) False LOC103043450
XM_007236095.3 mRNA downstream 4274 15379678 ~ 15384906 (+) False LOC103043450
XM_007236099.3 mRNA downstream 68417 15443821 ~ 15476215 (+) True LOC103044992
TU192022 other upstream 82061 15228710 ~ 15285457 (+) True G141791
TU191927 other upstream 310545 15054657 ~ 15056973 (+) True G141740
TU191577 other upstream 837222 14528140 ~ 14530296 (+) True G141495
TU191433 other upstream 1166520 14180665 ~ 14200998 (+) True G141410
TU191361 other upstream 1508913 13855603 ~ 13858605 (+) True G141361
TU191950 other downstream 10212 15385616 ~ 15390415 (+) True G141754
trnae-uuc_20 other downstream 38372 15413776 ~ 15413847 (+) True trnae-uuc_20
XR_002651027.1 other downstream 1572978 16948382 ~ 16967950 (+) True LOC103022185
TU192402 other downstream 1596798 16972202 ~ 16973930 (+) False G142067
TU192403 other downstream 1596798 16972202 ~ 16985295 (+) True G142067

Expression Profile