RNA id: XM_022677719.1


Basic Information

Item Value
RNA id XM_022677719.1
length 369
RNA type mRNA
GC content 0.54
exon number 2
gene id LOC111188235
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 18930879 ~ 18932145 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

atggAAACTCCACTGATTCTGGTTGAAGAGAAAAAGACGTGGTGGAACGCTCTGAAATACTGCAGGGACAATCGGATGGACCTGGTCTCTGTTCACAATGAAACAGTTCAGCGCTTGGTGGAGAATGTTACTAGAACTGTCTCCACTCCCTTTGTGTGGTTGGGCCTGCGTCACACCTGTGCTCAGGACTTCTGGTTCTGGGTCATTGGATCTACCGTCTGCTACCAGAACTGGGCCCCGGGGAACGGTACGAGGGTGGAGGACTGCAGCGCGGGTGAGAGGTCAGGAGCGGTGCAGCCCGGGAGTAAGCAGTGGGTCAGTCTGCCAGAGACTCATGAGCTCTACTTCATCTGTACCCCCTTTACCTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002650989.1 lncRNA upstream 391 18923993 ~ 18930488 (+) True LOC103030232
TU192799 lncRNA upstream 35872 18866307 ~ 18895007 (+) True G142385
TU192794 lncRNA upstream 59980 18864191 ~ 18870899 (+) True G142382
TU192792 lncRNA upstream 70138 18860351 ~ 18860741 (+) True G142380
TU192782 lncRNA upstream 76859 18853400 ~ 18854020 (+) True G142377
TU192814 lncRNA downstream 19069 18951214 ~ 18957062 (+) True G142397
TU192818 lncRNA downstream 59044 18991189 ~ 18994237 (+) True G142401
TU192837 lncRNA downstream 188107 19120252 ~ 19121602 (+) True G142416
TU192839 lncRNA downstream 188107 19120252 ~ 19121602 (+) False G142416
TU192855 lncRNA downstream 238382 19170527 ~ 19170796 (+) True G142432
XM_007240018.2 mRNA upstream 104736 18821418 ~ 18826143 (+) True exosc4
XM_007240015.2 mRNA upstream 114482 18794903 ~ 18816397 (+) True LOC103034112
XM_007240016.3 mRNA upstream 114482 18794905 ~ 18816397 (+) False LOC103034112
XM_022678151.1 mRNA upstream 145521 18753807 ~ 18785358 (+) True LOC103034870
XM_022678134.1 mRNA upstream 1626790 17235199 ~ 17304089 (+) False LOC111194332
XM_022678160.1 mRNA downstream 37741 18969886 ~ 18987441 (+) True LOC103047721
XM_022678161.1 mRNA downstream 37741 18969886 ~ 18987227 (+) False LOC103047721
XM_022678164.1 mRNA downstream 162621 19094766 ~ 19119530 (+) True LOC103046799
XM_022678165.1 mRNA downstream 162621 19094766 ~ 19119530 (+) False LOC103046799
XM_022678166.1 mRNA downstream 493849 19425994 ~ 19431174 (+) True LOC111194335
TU192788 other upstream 37370 18856236 ~ 18893509 (+) False G142378
TU192797 other upstream 60562 18865450 ~ 18870317 (+) True G142384
TU192790 other upstream 72372 18856236 ~ 18858507 (+) True G142378
TU192525 other upstream 1726386 17203222 ~ 17204493 (+) True G142166
TU192434 other upstream 1857395 17058294 ~ 17073484 (+) True G142093
TU193111 other downstream 804161 19736306 ~ 19868292 (+) True G142620
TU193252 other downstream 1285134 20217279 ~ 20220147 (+) False rnf138
TU193349 other downstream 1850438 20782583 ~ 20790122 (+) True G142820
TU193733 other downstream 2666537 21598682 ~ 21601365 (+) False LOC103047556
TU193751 other downstream 2713760 21645905 ~ 21646705 (+) True G143122

Expression Profile