RNA id: XM_022677738.1


Basic Information

Item Value
RNA id XM_022677738.1
length 6606
RNA type mRNA
GC content 0.51
exon number 22
gene id astn1
representative False

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 438698 ~ 694723 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CACATCCTCCGCGTGCACTGGTGCGCTCTGTTATGGTGCGGCGCTGCAGCGGGAGAGCCTGCTGTAGCTAACGGCTGGATGCAGACGGGCACAGCGGCGGCTGTGGAGCTCCTACCGCCGGTCTGAGAGCATTTTTGAGGTAAAATCGGCTATAACGAGTCGAACTGTGCCGTTTTTAGCCGAACCGAACCTGGATTTGAGGGCGTTTGGGCTTCTCGCTCGCGCTCGCTGTTCTGTGGTGATTTCCCGCTTCTGGGAGCAAGCGCGGGAAGCGAGGCTGAGAGGAGGCTGaggctgctgaagctgctgaggCGTAGATCAAAATGGCTCCTCGCTCGCTGTTCTCCGCGGTACCAGCTCTCTGCTCGGTTCTGGCTGCGGTTCTGGTGCTGGTGGTGCCCGGCGGCCGATGTCTGAACGGGGAGGAGGACCGCTCGCAGGACGCCGAGTGTAAGATGAAGAGTGTGACCGTGTCCGCGCTGCCCTTCCTGCGGGAGAACGACCTGAGCATCATGCACAGCCCGTCGGCCTCCGAGCCCAAGCTGCTGTTCTCGGTCCGGAACGACTTCCCCGGGGACGTGGTAGTGGTGGACGACCTGGAGAACACCGAGCTGCCCTTCTTCGTGCTggaGATTTCTGGGAATTCGGAGGACATCCCGATGGTGCGCTGGAGGCAGCAGTGGTTGGAGAATGGCACGCTGCTGTTCCACATCCACCACCAGGATGGAAGTCAGAGCCTCCCCGGACTGACCGCCACCGAGGATCCGGCCAGCGACACGGCAGAGGAGGAGCTCCGAATTCTGCACATCTCTGTGATGGGAGGTATGATCGCCCTGCTTCTCTCCATCCTGTGTCTGGTGCTGATTCTGTACACGCGCAGACGCTGGTGCAAACGGCGCCGTGTGCCTCAGCCCCAGAAGAGCGCGAGTGCCGAGGCGGCCAATGAAATTCACTACATCCCTTCCGTGCTGATGGGCGGCCAGGCGCGCGAGAGCCTGCGTAACTCTCGCGGTCAGGGCCACAACTCCAGCGGCACGCTCAGCATCCGGGAGACGCCCATCCTGGACGGGTACGAGTACGACATCACCGACCTGCGGCACCACCTTCAGCGCGAGTGCATGAACGGGGGCGAGGACTTCACCAGTCAGGTGACGCGAACGCTCGACTCTCTGCAGGGCTGCAACGAGAAATCCAACATGGACCTCACCCCCGCGGGTTCAGCTTTCCTGAACCCGGATGGGGATTCGGGCACTGAGGCGGACAGCGAGCCGCAGCTCACCTTCTACACCGACCCAAACCGCAGCCGGCGGCGTAGCCGAGGTATGAGAAACGGTAACGTCAACCCAGCGTGGGGCTCCGGGGGCTCCCCACGTAGCCCCATCAATAAGACCACCCTGACTTTGATCAGTGTGGTGAGTTGTGTGATCGGCCTGGTCTACTCCTCTCACCTCTCCTGTGGCCTGAACGTCCGAGTCATCCTGCACGTCCCGGAGCACCTCATCGCAGACGGCTCCAGGTTCGTGCTGCTGCAGGGGAGCCAGCTGGACGCCTCCGATTGGCTGAACCCGGCTCAGGTGCTGCTGTACTACCAGCAGAATGCCAGCGGGCCCTGGCTCAATGAGCTGTGCGGACGGAGGCTCCTGGACCCCTGTGAACACCAGTGCGACCCAGATACAGGTGAATGCCTCTGTTTTGACGGCTATATGAAGGACCCTGTTCACAAGCATCTGTGCATTCGCAACGAGTGGGGTCCGAATCAGGGgccGTGGCCGTACACGATTTTCCAGCGTGGTTTTGATTTGGTGATGGGAGAGCAGCCCTCCGACCGGATCTTCAGGTTCACGTACACTCTGGGAGAAGGCATGTGGCTGCCACTCAGCAAGAGCTTCGTCATTCCCCCGGCCGAGCTCGCCATCAACCCTTCTGCCAAGTGTAAGACGGATATGACTGTCATGGAGGACGCCGTGGACGTCAGGGAGGAGCTGATGATCTCCTCGTCGTTTGATAGTCTGGAGGTTCTGCTGGACTCGTTCGGGCCGGTGCGCGACTGCACCAAAGACAACGGCGGCTGCAGTCGCAACTTCCGCTGCATCTCCGACCGAAAGCTGGACTCCTCCGGCTGCGTGTGCCCTCCTGGTTTGAGCCCGATGAAAGATGGCACCGGTTGCTATGACCACCACATTGGCATCGACTGCTCAGATGGGTTTAATGGCGGCTGTGAGCAGCTGTGTCTTCAGCAGCTGGCACCTCTGGAGGAGGACCCCACCCTCTACAACATCCAGATGTTCTGCGGCTGCATCGAGGATTATAAGCGCGGCGCTGATGGGCGCTCCTGCCTGCCGCTGTCTGAAGCCTGCACCGAGGGGGTGGACTGCGGAGAGGCTGCCGACATCCCGGCCAATCAGACGGTGTTTGGAGATCTCTTCTACGGCTACGACAACCGCACCAAGGAGATCACATCAGGACAGATCCTCAAAGCCACCTTCAGACAGAAGAACTTCGCCCGCGGCATCGAGCAGCAGCTTCCCGACGGCATGGTCGTGGCGTCAATACCCAACGAGGCTCAGTGCCACGAGGAGCTCTCGGACCCGGTTCCTGATCCAGAGTATCTGACGGgGATGGTGAACTACAGCGAGGTATCAGGATATCCGCTGGTCCAGCACTGGAAGCTGCGCTCGATTCTGTACCACGTGAAGCTCAATCAGTGGGTCCTCTCTCAAGCCTTCAGCTCGGCCGTGCGCTCGCTGGACGGTGCCACCCTGCGGAGTGATTTCGTGTCCATTCTGAAGGAGTTCGGTAACCATTACATCCAGGAGGCGGTTTACGGCTTCGAGGAGTCCTGCACCATCTGGTACCCCAACAAGCAGGTGCAGCGCCAGCTGTGGCTGGAGTATCAGGACATCAGTAAAGGTAACTCCCCGTCGGACGAGTCTGAGGAGCGGGAGAAGGAGCCGCGGACGCTCACCTACCCCGCCTACATCGCCAGCCTGCTGGACTCGGGGGCCAAGCGCATGGCGGCGGGGGTGCGTATGGACTGCAGCAGTCAGGGGCAGTGCCCGCTCTCCTGCCACCTCTGCCACATGAGCCCTGGGCCCCCGCGGCCGGCCGAGCCTGTGCTGCTGCAGGTCACTAAAGCTGCTCCGCTGTACGAACTCGTCAACAACAACGAGACCTACCAGGCTCTGCAGGAGGCGATGATGAGCGTGCTGTGGTGTTCGGGGAGAGGAGATGTAATCGATGACTGGTGTCGCTGTGACTCCAGTGCCTTCGGCGCCGACGGCCTGCCCACGTGCGCCCCGCTCCCCCAGCCCACGCTGAAGTTGTCGCACTTGTACGAGCCGAGCAGCTCACTAGTGATCGTGGAGTGGAATCACGCCGAGCCGCCGATCGGAGTGCGCATCGTCGATTATCTCATCAGTCAGGAGAAAGTGACGGAGAGGACCGATCACACCAAAGTAGAAACAGAGACGATGCTGAGCTTTGTGGATGACATCCTGTCCGGGGCAAAGTCTCCCTGTGTGATGCTGGGGGACATCCCCGATCCCTTCGTCTCCATTTCCATGATCATACGCTGCCTGGAGCCCGACACCACCTACATGTTCAGACTGTGGGCGGTGGATAACACAGGCCGGCGCTCCAGCCCCAGCGAGGTCACCATCAAGACCCCCTGTCCTGCAGTGGATGATGTGAAAGCACAGGaaatagcaGATAAAATCTATAACCTGTTTAACGGCTACACGAGTGGGAAGGAGCAGCAGACGGCCTACAACACGCTGATGGACCTGGGATCTCCCACGCTGCACCGCGTCCTCTACCACTACAACCTGAGATACGAGAGCTTCGGAGAATTCACCTGGCGCTGTGAGGACGAACTCGGACCCAGGAAAGCAGGTCTGATTCTGTCTCAGCTGAATGATCTGAGCGCTTGGTGTCGGGGACTCCTCCAGGAAGCGAAGATCGGGCTGCGCCGGGCGTCGCTGAGGTACCTGTCCTGCCGCTACACCGACACCAGGGCGTTCGGCCTCAACTGGCTGGACCTGGGTCAGGACTTACGCAAAGCCTGCGAGGAGCAGATGCTGCCCGTCATGTACAACGACTACGGAGAACCTAAAGAACTCTGAAGCTCCAGGAGACCTGAGGAGATCTCACGAGACACGGCGGGAGTCCTGCGCTACATCCTGGTTCTTTACGGCTCCTGTACAAAACTCACCTGGAACTGTCATCTACTGCTACTGAACATCCTGCATCCGTTCTGATCCTTCCTCCTGAATCAGTTCAATTTATACGTTTAATAAAGGTTTAATAAAGGTttaataaaggttgattaaCATCTACAACAGACCTAAGCTCAAACCTCGACCTTATAAAGAGTCTTCTGGAGCTGCGAGGCTGAAATTTACTGTAGTGAAGAGAGAAATCCGGAGAaataagaaactcatcatcattatcatcctcCCAGCTAACAATATTCGCTTAGTAGAACGTTTTCTCAACTTTACAGTTAACGTTTTAATCTGTCAGGTTTACTGAATGCTCTTAGAAcgtttttatttactattttcagACGTTTTGGTATGGTCGCCTCAACGTTTGAATTATTAGTTTTGGGAACTTCATGTGAGAAACGTTCGAATAACGTTGTGGTGCAAACCATTATGAAAtcacatgttttcagaatgTTCTGAGAACAtgataatggtttgcatcacaacgttATTGAAATATTTCCCAGCTATTTGGTTAGTCGAACATATTCTGAACCTTACAGTTAACGTTTTAATCTGTCAGGTTTattggatgttcttagaatgtttttatttaacatctAACATATTTTTAAACGTTCTGGTAATTTCGCCTTTAAcgttttaattttaagttttgggAATGGTACTTATAACATTTCACTAATGTTAGTGTTCTTCTAGctcacaatgttattagaatgtttcccAGCTAAATATATGTGGTTagtagaacgttttctgaatgttaaaaTCAAAGGTTAGAACCAGAACATTAACTGTTTAATCTGTCAAATTTACTGGATTCTCTTTGaaagtttttattaaacatttttaaatgttctggtaacatCGCCTCAACATCGCTAAACGTTATTTtaacgttctctgttagctgggatgGCAGTTCTACATTCAAACCTTCTTTTTTTTACGAAACTGTTCATACGGTTGTAAACAGACAGGTAACCGGAATCTAACTActaatattttaaactaaacgtctcgtttttctttcttctgctactttaaatgttacataaaaaaagattttctcaTAATTGCTAATCCTTGCTGTgcatattgattgattgattgattgattgattgattgattgattgattgcagTGGCAGCTTTGTATAGTCTGTGCTCTGTAAATAAAGCTCAACTGActacatgaataaataatttactaaaTGAATGAGAAACTAATAGATGTTGCAACAATAaagctgtagactgaaaacaattgggtttgacattaaaatatatgaaatatgagataaaagatcaacatttcagcttttatttcccacccatttttcttttgAACAAAAGTACTCCTTTCTGGAGGTGTTGCTGATGTCACTGAAagtggttttagttttttttttttcagtgtttggtttgtgatcatccatcttcctcttgattatattccagaggtttttaatttggtaaaatcaaagaaactcgtcattttaagtgctctcttatttcttttacagagctgtatataaatatataatagcaGAGCTAGGCCTGGGTGGGATTACAGGTTAAAGAGATGATTAAAGCtgcagaacttttttttatttgctaaaatGCCAGAATAACATGATTTACGTGGTTTACGATACAGTCTGAAACTCTGATGTGATGATTTTGGCGGGTAGTTTGTCACGGCGGCTGGCAGCTCTTTTATATcttgttagcattgttagcattgttagcattgttagccttGTAGTGCCAGTGCCGAGCTCCAGAAACGTCCTGCTTGATGAGTGGTGTTCGGGGTAAAGTGGAACTAAAGGAGTTTGATTGGGGGTTTTAAAGGGGAGGAAGGTGATTTTTTTGGactttttgatttgttttgccAGTTTTATTGGCCTCCGTACAGGAAGCGGATGTGTGTACAGTTAGTTAAAGGCCTttcattttccagagctgcatttgTAGGTATTGTGGTGTGTTTCCGCCGATAGAGAACACGCCGGCTTATCTAGGTAGAAAGcctgacttactgacttacttacttctttttttatagGAACTGAATCTGTATCTAATCGATGTGATaaacagtctgtctgtctgtagtgTGTATAGAATTAAtccaaatggaaaaaaatctaaaacttgtGTATCGAGGGACGAACAGCGAATGTAATGGATGATAAACGGACTGATTTATTCTGTATGTTGTGCTGAAACTGAACTAATGGCTGATGTATTTGAAACTGTACAGGTCTTTTTAAATCGTGTTGGAAAGAAACTCGAACTGTTTACAGTAAAACTCTTGTCTTGTTAAtgtttctaattatttattattccaaGTAAAAATGCCCCGAAATCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU186264 lncRNA upstream 80880 343868 ~ 357819 (+) True G137669
TU186265 lncRNA upstream 84138 346725 ~ 354561 (+) True G137670
TU186188 lncRNA upstream 244761 193396 ~ 193938 (+) False G137627
TU186191 lncRNA upstream 244829 193309 ~ 193870 (+) True G137627
TU186190 lncRNA upstream 244829 193396 ~ 193870 (+) False G137627
TU186362 lncRNA downstream 55118 749841 ~ 750410 (+) True G137737
TU186389 lncRNA downstream 211731 906454 ~ 1011995 (+) True G137754
XR_452701.2 lncRNA downstream 286210 980933 ~ 986154 (+) True LOC103021626
TU186427 lncRNA downstream 406665 1101388 ~ 1226517 (+) True G137782
TU186509 lncRNA downstream 656551 1351274 ~ 1455746 (+) True G137839
XM_022677734.1 mRNA upstream 245702 177663 ~ 192997 (+) True dars2
XM_007235358.3 mRNA upstream 265650 161857 ~ 173049 (+) True klhl20
XM_007235353.3 mRNA upstream 352588 75683 ~ 86111 (+) True LOC103047317
XM_007235354.3 mRNA upstream 352588 75683 ~ 86111 (+) False LOC103047317
XM_022677731.1 mRNA upstream 397951 31377 ~ 40748 (+) True LOC103023540
XM_022677743.1 mRNA downstream 67992 762715 ~ 781196 (+) False rfwd2
XM_022677742.1 mRNA downstream 67993 762716 ~ 781196 (+) True rfwd2
XM_022677747.1 mRNA downstream 120115 814838 ~ 969334 (+) False tnr
XM_022677744.1 mRNA downstream 120116 814839 ~ 969334 (+) True tnr
XM_022677746.1 mRNA downstream 120116 814839 ~ 969334 (+) False tnr
TU186165 other upstream 344126 93285 ~ 94573 (+) True G137614
XR_002651002.1 other downstream 67993 762716 ~ 781196 (+) False rfwd2
TU186393 other downstream 286257 980980 ~ 988638 (+) True G137756
TU186409 other downstream 343146 1037869 ~ 1039926 (+) False mrps14
TU186490 other downstream 802576 1497299 ~ 1499956 (+) False G137826
XR_002650979.1 other downstream 932232 1626955 ~ 1638255 (+) True LOC111194189

Expression Profile