RNA id: XM_022677742.1


Basic Information

Item Value
RNA id XM_022677742.1
length 3736
RNA type mRNA
GC content 0.49
exon number 20
gene id rfwd2
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 762715 ~ 781196 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CGCTCCGGTACAGAGGGTGGCGGTGGAGCTCTCCTGCCCGCCGCGGTGTGAGTGTTGCCTGGCGGCGGCTGTTCTTCTGCAGCGGGCTGAAATCTGTTCAAACCCCCGTTTGAGAATTGTCAACAGGAGGCTCCGCGGTGAGGATATTCTGTGTTTTGGTGGCTGATATTAAACCCAGCGCTGCTCCAGGCAGAGCGGTGAGCGGAGAGAGTGTCTGCGGGGTACAGCGCGACTGTTTCCCCGCTGCTGCGGCTCTGTGTGCGGTGTAacggcggcggcagcgccggGCTTGCTGGGCCGGTTAGCATGCAGTGAAGCTTCGGGCCTGCGGGGAGGGAGTTCATACAGGCGGCACCAGGGAACCATGTCGAGCGGACGGCAGCAGCACCAGGGCGGCGGCGTGGGCTCTGTGCCCGGTACGAGCTCCGGGAGCGGGAACACCGCGAATAGcgggagcagcagcagcgttaCGGCCAACGGGAGCAACACGGGAGGCGGCAGCGGCGGCGGAGGAGGATCCTCCAGGACACTGGGCTCCGGAGCTGAGCAGCAGCTTACGGGGACCCAGAGCGGCAGAGCTGGCTCCTCCGGCGGGAGCTACAGCAGGAAGCGGCCGCTGTATAACGGCCTTATTAATCCGTATGAGGATAAGAGCAACGACTTCGTTTGtccCATATGTTTCGAAATGATAGAGGAAGCTCACATGACTAAGTGTGGCCACAGTTTCTGTTATAAATGTATACGACAGAGTTTGGAGGACAGCAACAGGTGCCCaaaatgtaattacattatAGACAATGTTGATCAACTCTACCCCAACTTCTTAGTGAACGAGCTAATCCTCAAGCAGAAACAGAGATGTGAGGAGAAACGGCTAAAACGGGACCACCCTaaTGGAACCAAGTGGCAGTTTTTCCAGGACGTTCTTGGCACGGACCAGGAGAATCTGGATTTGGCAAACGTCAACTATATgttggagctgctggtgcagaAAAAGAAGCAGCTTGAAGCGGAATCACAAGCAGCTCAGCGGCAGATCTTAATGGAGTTTCTGAAAGAAGCTCGGAGGAATAAGAGAGAGcaaCTGGAGCAGTTACAAAAAGAGCTGAACTTTTTGGAAGAGGACATAAAGCGCGTTGAGgaaatGAGTGGGATGTACTCACCCGTCAGTGATATGGACCCTAATTTGGACAGCACTGTTCCCCAGTTTGGTGAACCCCATTCTCCTGCCCCTAGCAGTAGCATCATAGAACCCACAGAATACATTCAGCCTCCTCAGTTTGGAGGAAGTTCACAGGGTAAAAGACAGACCTGGTACAACAGCACTCTGGCCTCTCGACGGAAGAGGCTAACGGCGCACTTTGAGGACCTGGAGCAGTGCTACTTCTCCAACAGGATGTCCCGAATAACAGATGACAGCAGGACTGTTAACCAGCTGGACGATTTCATGGAGTGTCTCTCCAAATTCACACGTTACAACTCCGTACGGCCGCTCGCCACCCTGTCCTACGCCAGCGACCTGTACAACGGCTCCAGCATCGTCTCCAGCATCGAGTTTGACCGTGACTGTGATTACTTCGCCATCGCTGGGGTCACCaagaaaattaaagtgtttgagTACGGGACCGTCATTCAGGACGCCGTGGACATTCATTATCCCGTCAACGAGATGACCTGCAACTCCAAAATCAGCTGCATTAGCTGGAGTAGCTATCACAAGAACCTGCTGGCCAGCAGCGACTACGAGGGAACGGTTATTCTCTGGGACGGATTCACCGGGCAGCGGTCTAAAGTCTATCAGGAGCATGAGAAGAGGTGCTGGAGTGTCGATTTCAACCTGATGGATCCCAAGCTTTTGGCGTCAGGCTCAGACGATGCGAAAGTCAAGTTGTGGTCGACTAACCTGGACAACTCCGTCGCCAGCATTGAAGCAAAGGCCAATGTATGCTGTGTCAAATTCAGCCCAACGTCTAGGTATCACCTTGCTTTTGGATGTGCAGATCATTGTGTCCATTACTACGACCTGAGGAACACTAAACAGCCCATAATGGTCTTCAAAGGTCACCGGAAGGCTGTTTCCTACGCCAAGTTTGTTAACGGAGAAGAGATAGTGTCTGCCTCCACAGACAGCCAGCTGAAGCTCTGGAACGTCAACAAGCCCCACTGCCTTCGCTCCTTTAAAGGCCACATTAATGAGAAGAACTTCGTGGGTCTGGCCTCCAATGGAGATTACGTAGCATGCGGAAGTGAAAACAACTCTCTGTATCTGTACTACAAGGGGCTCTccaaaacactgctgaccttCAAGTTCGACACTGTGAAGAGTGTTTTGGATAAGGATAAGAAGGAAGACGACACTAATGAGTTTGTTAGTGCTGTGTGCTGGCGTGCGTTGCCAGACGGGGAGTCGAACGTGTTGATCGCAGCCAACAGTCAAGGAACAATCAAGgTACTCGAGCTGGTCTGAAGATCTGCTGGAATCAATCATCAGGCGCTTTTATTGAACCATCGCTCAGCTTCTCTTCTCTGCAAAGAAATACAGGAGCACTAAAGCTCGGCTAGAGCTGCAGCCGGCGTTTCCAGCGagacgagtgtgtgtgagagcgtgagtgtgtgtgtgtttgagagagagcacaatggaCAGAAGTGAATTTCTGGATTTTTATTGAAGCTGAACTTTGTGAGCAGATTTGAGCGTGCTGCTCTCCGGTGAAAGGGGTGATGATGAGCGATGCGAGAAgaagatgaggatgatgagCGCGTAGCGGATTCTTCgattaaaaaaagaagcctcttctgaagtggTGGTTGTTGATGATTTTAAGGCGCTATGATTATAGAGAGAGATTTGTTCGAGCGGAGAATCTCCCACACGTGTAAATTTATAAAATCAGTAGAGGCTAATCTAACAGAAGTAGAGCTACACGAGTTAAAAAAGCCAAAGCACAAGACCAGAACACGATGAAACgctttttattgtataaattatcAACTGCTCTGCCGTTCTTTTGAGCCTATAGTCTctatatactctctctctctctctctctttcttcttttgatacacagcgtctctctctctctctttgtctctctgtctctctctctctctgtctctctgtctgtctgttcataCAGTATGATGATGAATGCACGCCAATACCTGTTACCAGTCACCAGAGTCCCCAGTTAAACTGCTGGTAGTTTCTAAAAGTGAATATACGGGGGATATATTACTCTGTTTTTATGTTGGTAATTCTTACGTCAAGGGACCTCAAAACTCTGCAGACTCTGCAGACAAGACGGATTTACGGAATTACTCTCTTACGCTTTGATGAAAGAAATCCTGCAAAAACGAGCTGGCGGAAAAACGTATTTAAAACCTACCGGTTGCCATGTCTCCCTTCATattcctcttcttttctttttattctctctccacTTAGTGCTCGTAGTTTCACGATGACACTATGTATTCTCTATTGGGGTTTATTTAACAATCACCCGTAACATTGCTGCTCTTTTTATCATTCAGTTCTTGtataagtattatttatttttgtaatttatagaaCCTATGTGAACTCCATACCCATGATTTAGCGTGTTTAGGTTTTGGAAGCTCGGGTCTTCGCTCTTATCGCTGCACCccagtaactctgtgttttgTGTATCCATTCTCTAATTTTAACCCAATATTTCatttgaatgaataaatgattctctTCGCATTGgt

Function

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K10143 RFWD2, COP1; E3 ubiquitin-protein ligase RFWD2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU186362 lncRNA upstream 12306 749841 ~ 750410 (+) True G137737
TU186354 lncRNA upstream 108267 654221 ~ 654449 (+) True G137729
TU186349 lncRNA upstream 235649 526248 ~ 527067 (+) True G137725
TU186264 lncRNA upstream 404897 343868 ~ 357819 (+) True G137669
TU186389 lncRNA downstream 125258 906454 ~ 1011995 (+) True G137754
XR_452701.2 lncRNA downstream 199737 980933 ~ 986154 (+) True LOC103021626
TU186427 lncRNA downstream 320192 1101388 ~ 1226517 (+) True G137782
TU186509 lncRNA downstream 570078 1351274 ~ 1455746 (+) True G137839
TU186520 lncRNA downstream 659067 1440263 ~ 1440805 (+) True G137850
XM_022677736.1 mRNA upstream 67993 438698 ~ 694723 (+) True astn1
XM_022677747.1 mRNA downstream 33642 814838 ~ 969334 (+) False tnr
XM_022677744.1 mRNA downstream 33643 814839 ~ 969334 (+) True tnr
XM_022677746.1 mRNA downstream 33643 814839 ~ 969334 (+) False tnr
XM_022677745.1 mRNA downstream 33643 814839 ~ 969334 (+) False tnr
XM_015603959.2 mRNA downstream 205225 986421 ~ 987706 (+) True kiaa0040
TU186165 other upstream 668143 93285 ~ 94573 (+) True G137614
TU186393 other downstream 199784 980980 ~ 988638 (+) True G137756
TU186409 other downstream 256673 1037869 ~ 1039926 (+) False mrps14
TU186490 other downstream 716103 1497299 ~ 1499956 (+) False G137826
XR_002650979.1 other downstream 845759 1626955 ~ 1638255 (+) True LOC111194189
TU186579 other downstream 1054281 1835477 ~ 1838517 (+) False LOC103042893

Expression Profile