RNA id: XM_022677752.1


Basic Information

Item Value
RNA id XM_022677752.1
length 1374
RNA type mRNA
GC content 0.43
exon number 6
gene id cacybp
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 1040890 ~ 1044717 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TATTTCGCATGTGACGCTACTTCCGGTAGGGGTGCAGCTCTCGCCGGCGGTGCCGCATTTGGCGCAACACTGTTCCAGAAGAGTCTGCTGTGTCCGCTCAGCTCAGCCGAACCACCGCAGCAGCAGCCGGGAGAGAGAGCGCGGAGTACCCGCTGAACTCAGCATGGAGCTCGGCCAGCAGATTGCAGGACTGGAGGCGGATCTGCAGGAGGTAACTCGTGTTCTGGAGCTGTGCGAGAGCAGCAGAGTGCGAGAGGTTCTCTCTCAGGAGAAGCAGAAGATCGAGAAAGAGCTGAAGCAGAAACAGAGCAGGAGGGAGGCTGGAGAGAGGCCAGACACTGCAGTGAAGGGATACACAGTCAAAATCAATAACTACGGTTGGGACCAGTCTGACAAATTTGTGAAAATCTACATCACACTAAAAGGTGTACATAAAGTCCCGGAAAATGTTGAAGTCAAATTTACAGAAAGGTCTTTCAGTGTACTCGTTAAAGATTTGGATGGGAAGAACCACGAGATGACCATCAATAACCTCCTGTGCCCCGTTTCAGTGGAGGAGAGCAGTAAGAAGGTGAAAACAGACATGGTGATCGTCATGTGCAAGAAGAAGGGGGTGAAGAAGTGGGAGTGTTTAACACAGGTGGAGAAACTAACTAAAGACAAAGATAAATCCAGCTATGATGAGAATGCAGATCCTGGAGAAGGACTGATGAACATGCTGAAGAAAATTTACTCAGAGGGAGATGACGAGATGAAGCGCACCATCAACAAAGCCTGGAGCGAGTCTCAGGAGAAGAAATCCAGAGGAGACGACTTCGACTTCTGATCTCACCAGCATAGTGATCCCACTACCATTCCTCACCTATACGCCATTCCACCACTATACAGTACCACTGTATcactctttattatattttacattttttatactcTTTAATTATCTGCTCATTTTGCTGAAAGTCTCCTACAGGAACAGGAGCGTATGATTGAAATGTGTTGTTAGTTGTGTGAACTTGATGATCTTTATGAACATGTGTGTTTTCAGAATCATATTCattggaaattaaaaaaattaaaatgcagtTTATGAAAAATTCCTGAATGTTTCACATCAGACACGCTTCAGTGATCTAACTGTTCTCTGTTCTGTGCTGTTATAAAAGAGTAAAATGCTTAAACACGGTATAAAAATGATGTCCTTTTGTGAAATATGCACATCTAAATATGCAACATCAGAATCCTAAACTAGATCATAATTTTTAGGTTTCTTCCAAGTGAACACAAACCGctctaatttttatttttttatttttctttaaatctgTTACTTGAATTTGGGTCtgtaatcataaataaaaagtgtcagTTCCTGGA

Function

GO: NA

KEGG:

id description
K04507 CACYBP, SIP; calcyclin binding protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU186389 lncRNA upstream 28895 906454 ~ 1011995 (+) True G137754
XR_452701.2 lncRNA upstream 54736 980933 ~ 986154 (+) True LOC103021626
TU186362 lncRNA upstream 290480 749841 ~ 750410 (+) True G137737
TU186354 lncRNA upstream 386441 654221 ~ 654449 (+) True G137729
TU186349 lncRNA upstream 513823 526248 ~ 527067 (+) True G137725
TU186427 lncRNA downstream 56671 1101388 ~ 1226517 (+) True G137782
TU186509 lncRNA downstream 306557 1351274 ~ 1455746 (+) True G137839
TU186520 lncRNA downstream 395546 1440263 ~ 1440805 (+) True G137850
TU186489 lncRNA downstream 447099 1491816 ~ 1499956 (+) True G137826
TU186491 lncRNA downstream 447099 1491816 ~ 1499956 (+) False G137826
XM_022677751.1 mRNA upstream 920 1037861 ~ 1039970 (+) True mrps14
XM_015603959.2 mRNA upstream 53184 986421 ~ 987706 (+) True kiaa0040
XM_022677747.1 mRNA upstream 71556 814838 ~ 969334 (+) False tnr
XM_022677753.1 mRNA downstream 1550 1046267 ~ 1057525 (+) True plk3
XM_022677754.1 mRNA downstream 25290 1070007 ~ 1082320 (+) True LOC103047582
XM_022677755.1 mRNA downstream 25400 1070117 ~ 1082321 (+) False LOC103047582
XM_022677757.1 mRNA downstream 40091 1084808 ~ 1089511 (+) True LOC103047078
XM_015604027.2 mRNA downstream 40091 1084808 ~ 1089511 (+) False LOC103047078
TU186409 other upstream 964 1037869 ~ 1039926 (+) False mrps14
TU186393 other upstream 52252 980980 ~ 988638 (+) True G137756
XR_002651002.1 other upstream 259694 762716 ~ 781196 (+) False rfwd2
TU186165 other upstream 946317 93285 ~ 94573 (+) True G137614
TU186490 other downstream 452582 1497299 ~ 1499956 (+) False G137826
XR_002650979.1 other downstream 582238 1626955 ~ 1638255 (+) True LOC111194189
TU186579 other downstream 790760 1835477 ~ 1838517 (+) False LOC103042893
TU186618 other downstream 978038 2022755 ~ 2024386 (+) True G137929
TU187669 other downstream 2757136 3801853 ~ 3815437 (+) False LOC103047488

Expression Profile