RNA id: XM_022677755.1


Basic Information

Item Value
RNA id XM_022677755.1
length 3120
RNA type mRNA
GC content 0.47
exon number 18
gene id LOC103047582
representative False

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 1070007 ~ 1082321 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CGGGAATCCGCAggtgtggaggtgtgtttggACTCAGGGAACAGAAGGGAGGGAGGAATGCTGGGTGGAATTTTTAAAACGACCCCAAACACCTGTGACACACCTACCACTCTCTCAGTTGATAGAGAGGCTTCGGCCAGCAGTGGTGATCATGCAGTGACCAGCgATAATGCAGGCTTGCTAAGCGGCCTGTTCAGACGATCACCCAAACCCAGCCCGAAATCAGCTCACGGACAGgaaaaTCCACTTGTTCAGACCGAGTCAAACCAATCAAATCAACCCAGTAGTGGGATGTTTGGATGGATTTTCAGGAACCCGTTCGGCTCCTCAGTTCAGGAGCGGGAAAAAGCAGAGCCGCCTGGAGATACACACTCAGAATCCACCCAGAAGACTAGCTCATGTCCTGATGGGACGACTGAAGAAGACAGCTCCTTAAATCAGACTGGTGTGAGCTCAGAAATTACAGACAGTGTGTTAAAAGCAGACGAGACGCCCCCCATCCCCCCCAGACCCACCCAGGAGgagCTCAACACTACCCTGATTTACAGACtgagtcttctccatccagcagaGAGTGACTGCACTCAGGAATCAGTGCAATCGGTGGACCAGTGCCCAGTCAAAGCAGCACAAGATGAAGACCATCAGGTGAACACACCTTTTATGGATGACGCTGAGGAGTGTGCTTCCATTACGAGTCAAAAGGACAAAGATGGCAAAGAGGAAACGGCTGAAAAATCAAAAAGCACACTGCCAAAGAAGAAGATagtgaaaaagaagaagaatccaTTTATGCCTCATGTTGTGCCCAAGGGTAAAGTGCAGCAGAAGAAGagtggagctggagctgaaccTGTGGAGAGTGAAGTGCAGAAGAAGTCCCTCATGGAGCAGCTGAATGAGCTTCGCTTGGAGAAAGCTCataaggaggaagaggagGATCTTGAAGGCCTGATGGAGTGGTGGAGCACAGTTAAACAATGGGAGCAGATGCCCAAAGAGGAAGATAtgacagaaaaagaagaggCCAAGGCGTTCGCGGTGACGGCAGAGAAGATCCAGAGGGGGATCCGAGTGTTTAACCAGCTGTTCTCAGAGCGAGCTGAAGGTCTCTGGCAGCACGTTATTGATTTGCGGGCGATTGCTGACGGTCTGGACCGCTTCAACTGGAGAACCAAAGTGGCGCAGATCACCGGCGGCTCCACCAGCGCCGTGGGTGGAGTGGCGACCATCACCGGCCTCGCCCTGGCGCCGGTTACAATGGGAACCTCCCTCATCGTGACGGCGGTGGGCCTTGGCGTGGCGGCGGCCGGCGGCCTCACCTCCGCGTCTGCTGGGATCTCCAACGCTGTCAACAACTCCATGGACCGCAAGAAGGTGGAGCGCATCGTGGAGGACTACCAGAGCAAGATGGCCGACCTCAACAAGTGCATGAAGTTCATCAAGCAGGGCATCGAGAACCTGCGTCAGTTTAACCTGCTGAGGGTGAAGAAACAGGCCTACAACCGGGACTTCCCCGGCCTCAACAGCGTCTACGAGGACGGAGCCATGGCCAGCAAAGCCATCCTCAGCAACGCCAACGAGATCATGCGGGTGGTGCAGATTGCCAACGTGGCGGGCAGCACGGCGGCCCGAGCCGTCCAGATCGCCAGCATGGCCACCGGTGTGCTCACCGGGCTCTTCGTAGGCATGGACATCTACTTCGTGACCAAGGACTCGCAGGAGCTCAGGAAAGGAGCCAAATCCGAATTCGCCGCCAAGATCCGAGAGGTGGCCGACCAGCTGCACGAAGGACTGGTGGAGCTCAACACCATCCGAGAGGAGCTGCAGTGCTCGGGATCCAACGCTGGAGCACCAGATACCAACCCTGCCTGCACCTCCACCGAGCTCTGAGGAACACCGGGAGAAGAGCGAGCTCAGTCCAGACTCACAGCAGGCTTAAAGAATCACGGTTATAgacttttatatacttttattgaCTTTTTAGACACTTTAGTCTAGTGTTTTAGGGGTTGTTTGGGTTTAAAAGGTGTTAAAAGATGCATCTCTTCACCTGGTCAATCTATTTTTCTCGTAGTTGAATAATAAGTGACTGCAAACATttccttttaaactttttatggtcgtaatatttaatatattgaaagtttatttatgttttgtatGGATAATGTGTGGTGGTGCCACAGTGTGTTGCACAGTTCCAGGGGCTTGGGGTTGGGGGTTCGATCCTCACTCCTTGGTGGACTATTTTCGTATCCACATGGGTTTTTCTGGAATAATCCCAAAAATACATGTGGAAAAGGAACTGCCTGTGCCGAGTTACCCCTTAAATACAAGTGGGTATGTGTTAACTGTGTGAATGGTTGTGTATGGCACTAGGACTCTTGGTTAGCTTTAGACTCAGTTTAAACCTGACCAGAAAGAAGCGAaaaagagatggatggatgtaggGCTGGACAgtaattcaataataatatttatcatgataaaaaatgttttaaatacattttcaatatGTCAGTATAACAATCTTAAAAATGCACTAATGCTACTTATttactaatactaattatttaaaaatcatactatgattttctggattttctgttAAATTCTGTCTCTCACAGTTAAAGTTTACCTACAATAAAAATTACAGACCTATATCAGGATATGAATTATATCCGTAATGTAGATCCAGCAATAGATAGATTTTGTAtaaaagttttagttttaatatatttaagagtGTCCAGATTTGAGAAACAAAGTTGGCGTATTCCAGCTGCTTTAAAGTCCTTTATTCCTTGTTtcctcatttttatttaattagtaattttgcattttatttcatGTGTAAATCGAGGGAGGAGAGTctggagagacagacagtccgaactgctcgaggtctattgtgaagtttccaccaataagtgatggtttggagagtcatgtctgtcatctgctggtgttgatccactcttatgaagatttcattttccagcaggacttggcacgctCCCCACACAGCCAAAAGTACTGTACAATATTCtctttttctgagacactatttttaggtttcattggctgtaagcttcataatcaataatcaacaatgaa

Function

GO:

id name namespace
GO:0042157 lipoprotein metabolic process biological_process
GO:0006869 lipid transport biological_process
GO:0005576 extracellular region cellular_component
GO:0008289 lipid binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU186389 lncRNA upstream 58122 906454 ~ 1011995 (+) True G137754
XR_452701.2 lncRNA upstream 83963 980933 ~ 986154 (+) True LOC103021626
TU186362 lncRNA upstream 319707 749841 ~ 750410 (+) True G137737
TU186354 lncRNA upstream 415668 654221 ~ 654449 (+) True G137729
TU186349 lncRNA upstream 543050 526248 ~ 527067 (+) True G137725
TU186427 lncRNA downstream 19067 1101388 ~ 1226517 (+) True G137782
TU186509 lncRNA downstream 268953 1351274 ~ 1455746 (+) True G137839
TU186520 lncRNA downstream 357942 1440263 ~ 1440805 (+) True G137850
TU186489 lncRNA downstream 409495 1491816 ~ 1499956 (+) True G137826
TU186491 lncRNA downstream 409495 1491816 ~ 1499956 (+) False G137826
XM_022677753.1 mRNA upstream 12592 1046267 ~ 1057525 (+) True plk3
XM_022677752.1 mRNA upstream 25400 1040890 ~ 1044717 (+) True cacybp
XM_022677751.1 mRNA upstream 30147 1037861 ~ 1039970 (+) True mrps14
XM_015603959.2 mRNA upstream 82411 986421 ~ 987706 (+) True kiaa0040
XM_022677745.1 mRNA upstream 100783 814839 ~ 969334 (+) False tnr
XM_022677757.1 mRNA downstream 2487 1084808 ~ 1089511 (+) True LOC103047078
XM_015604027.2 mRNA downstream 2487 1084808 ~ 1089511 (+) False LOC103047078
XM_007229188.3 mRNA downstream 45756 1128077 ~ 1166419 (+) True htr5a
XM_022677758.1 mRNA downstream 135189 1217510 ~ 1223829 (+) True insig1
XM_007229176.3 mRNA downstream 158914 1241235 ~ 1245769 (+) True LOC103046777
TU186409 other upstream 30191 1037869 ~ 1039926 (+) False mrps14
TU186393 other upstream 81479 980980 ~ 988638 (+) True G137756
XR_002651002.1 other upstream 288921 762716 ~ 781196 (+) False rfwd2
TU186165 other upstream 975544 93285 ~ 94573 (+) True G137614
TU186490 other downstream 414978 1497299 ~ 1499956 (+) False G137826
XR_002650979.1 other downstream 544634 1626955 ~ 1638255 (+) True LOC111194189
TU186579 other downstream 753156 1835477 ~ 1838517 (+) False LOC103042893
TU186618 other downstream 940434 2022755 ~ 2024386 (+) True G137929
TU187669 other downstream 2719532 3801853 ~ 3815437 (+) False LOC103047488

Expression Profile