RNA id: XM_022677766.1


Basic Information

Item Value
RNA id XM_022677766.1
length 2646
RNA type mRNA
GC content 0.50
exon number 17
gene id cdc73
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 1564930 ~ 1594076 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ACTGTGTGTTTAGTAACTTTGGggcttaaacacaaaatacagcacACACAGAGGAGATAAGAAAAGGACGATTTAAAGAGTTGAGGTGTTGATAAGGTGTAAAACAGAGGAGTTTATGTGGTGAGAGCGCGGGTTTAAGCGCGGACAGGGAGGGCAGCAGGGCTCCGTATAGCCCCCCGCCTCCGGTTCAGGTCTTCCCAGTAAAAGCCCGTGTGTTCGGAGGGTGAAGATGGCGGACGTGCTGAGCGTGCTGCGGCAGTACAACATCCAGAAGAAAGAGATCATCGCTAAAGGAGAGGAAGTGATATTTGGAGAGTTTTCATGGCCCAAAAACGTCAAAACCAACTATGTGATCTGGGGAACAGGAAAGGAAGGCCAGCCTAAGGAGTACTACACTTTGGACTCCATTCTTTTCCTTCTCAACAATGTGCATCTTCCTCACCCGTCCTATGTGCGCAGAGCTGCGaCAGAGAACATACCTGTGGTCAGAAGACCGGACAGAAAAGACCTGCTGTCATATCTCAATGGAGAAAGCTCATCATCAACGAGTATCGACAGAAGTGCACCCATTGAGATTGGTCTACAGAGGCCGACACAAGTCAAACGAGCTGCAGATGAAGTTTCTTCAGAAGCAAAAAAGCCACGATTTGAgGATGAAGAACGAGTCCGTCTGGATAAGGAGCGTCTGGCTGCCCGTCTGGAAGGCCATAAGGAAGGCATTGTGCAGACGGACCAGATTCGGTCGCTCTCAGAGGCCATGTCTGTGGAAAAGATTGCCGCCATCAAAGCCAAAATTATGGCCAAGAAGCGTTCCACCATCAAGACTGACCTGGACGACGACATCACCCTGAAGCAGAGGAGCTTTGTGGACGCTGAAGTGGACGTGACGAGAGACATCGTCAGCAGAGAGCGCGTGTGGAGGACGAGGACCACCATTCTACAGAGCAGCGGGAaGAACTTTTCCAAAAGCATCTTTGCCATCCTGCAGTCAGTAAAGGCCAGAGAAGAGGGCCGAGCTCCAGAACAGAGACCAGCACAGAATCCAACTCAGACGgatCCATCAGTCAGAAACAAGCAGCCGGTGCCAGCGGCCTACAACAGATACGATCAGGAGCGATTCAAAGGGAAAGAGGAAACGGAGGGATTCAAAATCGACACCATGGGAACTTACCACGGCATGACGCTGAAGTCTGTGACggaAGGAGCATCAGCACGGAAGGCTCAGACTCCTGCGATTCAGGCTGTTCCCAGACCAGtGTCACAGGCAAGACCCCCTCCCAACCAAAAGAAAGgctCGAGAACCCCCATCATAATCATCCCAGCTGCTACCACTTCCCTCATCACCATGCTCAACGCCAAGGACCTCCTGCAGGACCTGAAATTCGTTACGcctgaagagaagaagaaactGGGCATTCAGAGGGATAATGAGGTGCTGCTGCAGAGGCGTAAAGACCAGGTTCAGCCTGGAGGATCCGCCATCAGCGTCACCGTGCCCTACAGAGTCATCGACCAGCCGCTCAAACTGGCACCACAAGACTGGGACCGTGTTGTGGCTGTCTTCGTCCAGGGTCCTGCCTGGCAGTTTAAAGGCTGGCCGTGGCTGCTGCCTGACGGATCTCCTGTGGACATTTTTGCAAAAATCCGAGCCTTCCACCTGAAGTATGACGAGGTGAGGATGGACCCCAACGTGCAGAAGTGGGACGTCactgtgctggagctgagccACCACAAGCGGCATCTGGACCGACCCGTCTTCCTGCGCTTCTGGGAGACGCTGGACAGgtatATGGTGAAACACAAGTCTCACCTTCGTTTCTGAGCTCTGTCGCCGCTGCGCTCGTCGCAGATCGATCTCCAGCCTGTGAATTCGCCTCCTCGACTCGGCCAGCAGTGCactaccccccacccccccccagcCTCCGAGCAGCACTTCAGGACGGGGTCCTGCAGCGTCAGAGTTTTATACGGGCGGATCGATAAACAATGTACAGATAAACAGTGTGGAGGGAGGGGGGGCGTGTCCGCGATTTAGTTTTCTGAGcagctgtgtttattttaacagcCAGGTTCTGTGTTAGGAAGTGGGTGGTACTGTTAGGAGCCCTGTTTTCTACTgcattgatttgatttttttgtttttttaaagaatccaGTGTAAAACAGCTGCACAAAAATTGAGAAAATGCTCTCCTGctgagataataaataaatactgccgTTTGTAACATCTCTCAGTATAGCTTCAGTTTCTCCCtggttttttgtttgtttttttctgtattctttTCTCTATGGGggaaagttttcttttttaaaatatatatatatatatattgtgaaaaaCGTTTTACTGTTCCCTGATTACAGCCGGCCGCCACGCAAACAGAAACTAAAGAAGCCGTGGCGTTTTTGCCTCGTTGTAAAGTTCTGTGTAAAGTTCTGTCGTATGGGATTAAGAGGAAAGCTTTCCAGATTCCATGTAAAAGGAGTAAAGGATTATGATGCTGTTTTTCAGTtgacagaatagaatagagagAGACTGTAAAGCAATAACCCTCTCCAGCGGTGGGTTTACATCAGTTCTGATCATCAGTTCCATCCTCAGAGGGCtgatttttgtataaataaatcgAATTGTGAAAA

Function

GO: NA

KEGG:

id description
K15175 CDC73; parafibromin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU186507 lncRNA upstream 27649 1532189 ~ 1537281 (+) True G137837
TU186503 lncRNA upstream 33007 1524712 ~ 1531923 (+) True G137833
TU186536 lncRNA upstream 47002 1516479 ~ 1517928 (+) True G137858
TU186529 lncRNA upstream 51991 1509653 ~ 1512939 (+) False G137857
TU186531 lncRNA upstream 51991 1509653 ~ 1512939 (+) True G137857
XR_002650978.1 lncRNA downstream 39411 1633487 ~ 1636665 (+) True LOC111194188
TU186561 lncRNA downstream 126666 1720742 ~ 1720954 (+) True G137880
TU186493 lncRNA downstream 167962 1762038 ~ 1770190 (+) True G137827
TU186495 lncRNA downstream 167962 1762038 ~ 1767436 (+) False G137827
TU186572 lncRNA downstream 210851 1804927 ~ 1806180 (+) True G137890
XM_022677660.1 mRNA upstream 73590 1489312 ~ 1491340 (+) True LOC111194186
XM_022677661.1 mRNA upstream 73623 1489305 ~ 1491307 (+) False LOC111194186
XM_022677760.1 mRNA upstream 115903 1436940 ~ 1449027 (+) True rnf32
XM_022677759.1 mRNA upstream 229737 1300585 ~ 1335193 (+) True rbm33
XM_007229176.3 mRNA upstream 319161 1241235 ~ 1245769 (+) True LOC103046777
XM_022677768.1 mRNA downstream 90317 1684393 ~ 1692239 (+) True LOC103022771
XM_022677770.1 mRNA downstream 129459 1723535 ~ 1735903 (+) True LOC103022156
XM_022677771.1 mRNA downstream 146095 1740171 ~ 1746238 (+) True LOC111194259
XM_022677773.1 mRNA downstream 183149 1777225 ~ 1802319 (+) True tsc22d2
XM_022677776.1 mRNA downstream 183151 1777227 ~ 1802319 (+) False tsc22d2
TU186490 other upstream 64974 1497299 ~ 1499956 (+) False G137826
TU186409 other upstream 525004 1037869 ~ 1039926 (+) False mrps14
TU186393 other upstream 576292 980980 ~ 988638 (+) True G137756
XR_002651002.1 other upstream 783734 762716 ~ 781196 (+) False rfwd2
TU186165 other upstream 1470357 93285 ~ 94573 (+) True G137614
XR_002650979.1 other downstream 32879 1626955 ~ 1638255 (+) True LOC111194189
TU186579 other downstream 241401 1835477 ~ 1838517 (+) False LOC103042893
TU186618 other downstream 428679 2022755 ~ 2024386 (+) True G137929
TU187669 other downstream 2207777 3801853 ~ 3815437 (+) False LOC103047488
TU187722 other downstream 2239179 3833255 ~ 3834460 (+) True G138701

Expression Profile