RNA id: XM_022677788.1


Basic Information

Item Value
RNA id XM_022677788.1
length 5185
RNA type mRNA
GC content 0.52
exon number 11
gene id LOC103042593
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 2322038 ~ 2362870 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gagagagagagagagagcagcaccatggacagaggcggagagagagaggcgctgGAGGAACCGGAGCGTGAGCGAGCGCAGTCCGCGCGGTACAGGAGAGAGACGCGCTCTGAGAACAGGATCTAAATGAAGCATCAAGTTCTCTAACTTTacctttcttcttcttgtctctctctctgtctttttctttctttctgtctttctctttctatctgtctctctctctctctgtctgatcTCACGCGAGAACAGAACACAACAGAACATCCCCCGCTGCTCGGTCTCCTCGCGCGTGAAGCGCTGTTTGGAAGAGCGGCTCAGATGGAGGATGGAGTTCTGcaacttctttctttctcctcctcctcctcctgtttCTGCTCTTCTCTCCGTCTGAGCAGCGCGTGCACGCGTACAGGGGCAGCGTTGCTTCAGTCTGAAACGTCTCGCTGTGTTTGTTGTGGTGGTGGGCGCAGGCTGGCAGCATGGGGGCACTGCTGCTGTGGCTCCTCATGCAGATGGAGCTTTTTCAGGGCTCCAGTTACGTCTACGTCTACGGGTACGGCTACGTGGACTGGGCAGATGGAGAAAATGCACGTGGGGACGCCGAAGCGGCTCAAAAGCCCACTGCACGTGCCACCATCGTGCACCGCCTGGAGGAGGACGTGCCAAAGGTGGTGGCCGCCTTCCTGCACACGGGAGACTCGTCCACGTTGACCCGTGCCAACTGTTCACGGCGATATGAGCTGGGCGGATTACgaacctcctcctcttcctcttcctcctccgtGTCCCGTCACTCGCTGCGTCCCGCCGTGGAGGCCGTGGGACGAGCTGCCAGCCTGCTGAACGGCCTGCAGCCGCTGGGGGACGGGCAGCAGCAACGGGACGCGGTCTGGTTGGGCGCGTTGGTGCGCAGCATGCTGGACGCGGACCCCAGGATACACCGGGCGGCCTTGGCGCTCCAGGCTGAGCCCCGGCTGCTCCTGCAGGCGACCCGCAGCGGAGGACATGTGGCGGTGAGGAACATGAAGGAGTCTGATCACGAGGAGTtcagggagaggaagaggaccCACGGGGGCAGAGGCCGGGGTCACGAGCCGGGAGAGATAAAGTGGTCAGCGCCGTATCTGGAGTGCGAACACGGGAGCTTTGCGCCGCACTGGCTGTTAACGCTCTCAGCAGGGATTTACTCGCCTGCAAAGGACGCAGCAGTTCCAGAGCTCAGaggAATAGTGAAAGTTGATGTCAATCTTCAAGATGAAGATATTGACCAGTGCTCCAGCAGTGGCTGGTTTGCAGGCACTCACCGCTGTAACTTGACTACTATGGAGTGTAAACCTGTCCCAGGCCATGGCTTTGTTCTGGACAAGTACAAGTGCCAGTGTAAGAGAGGCTTCTACTCGCCCAGGCGAGTGGCACTCAACGGCGTCTCAAAATCAGAGCAGGGTCTCTACAGCGATGATTTCTCGGACTCGTCCGCTCGGTGTCTGCCGTGTCGTGAGGGCTGCTCGTTCTGTCAGGATGATTCTCCGTGTCTGGCTCAGGAGGACGGGGTCCTGCGGGTGGCCGTGGCTTCATTCCAGGGCCTCTGCATGCTGCTGGACTTCATCAGCATGCCGGTGGTCTACCACTTCCGCCGAAACAAGAGAATTAGAGCTTCAGGTCTGATCCTGCTGGAGGCCATCCTGGCTGGAGCCATTCTCCTCTACTTTCCTGTGATGATCCTGTACTTTCAGCCGAGTGTTTTCCGCTGCGTTCTGCTACGGTGGGTCCGGCTCCTGGGCTTCACTACAGTCTATGGAACAGTAATCCTCAAACTGTACCGGGTTCTGAAGGTGTTCCTGTCGCGTACGGCTCAGCGGATCCCCTACATGACCAGTTGGCGAGTGCTGCGTCTGCTGGCCGCCATCCTGCTGGTGgttctctggtttctggtgGCCTGGACCTCAGCCATGTGCCAAAGCACAGACGTCCATCACACCCTGGTGGATGTGGGCGTGACTCCAGAGGGCCTGCAGTTCAACATGTGCATGCTGGACCGCTGGGACTACATGATGGCTGTTGccGAGTTCCTGTTCCTGCTGTGGGGCGTCTATCTGTGCTACGCCGTGCGAACCGTGCCCTCGGCCTTCCACGAGCCGCGCTACATGGCCGTCGCCATCTACAACGAGCTCCTCATCTCTGCAATATTCCACATCATTAGGTTCACCCTGGCTCCTGGATTACACCCTGACTGGATGCTCATGTTATTTTTTGTCCACACACATCTGACGGTGACGGTGACTCTCGGACTGCTGCTCATACCCAAGTTTGTATTTACTGAGACTCACATGCAGGATGACATTGCGACAGAGGCCTACGAAGACGAGCTGGATATGGGTCGGTCCGGTTCTTACTTGAACAGCAGCATAACTTCCGCCTGGAGTGAACACAGTTTGGATCCCGAAGACATTAGAGAGGAGCTAAAGAAGCTCTATTCCCAGCTAGAAGTCTACAAGCGAAAAAAGATGTTGGCCAATAACCCTCATCTCCAGAAAAAGCGCAGCTCCAAAAAAGGCATTGGGCGTTCGCTCATGAGGCGCATCACCGAAATACCAGAGACAGTGAGTCGCCAGTACAGTCGCGAGGACAGGGACGGGAGTGAACATGGCAGCAATCGCAGCACCCTGCGGAGAAACCCATTTGAGCCTTCCCACAGCGGGAAGTCCAGAGAGGACTCTCTGAAGAGCAGGATGTTCTCCTTGAAGAGGTCCCACAGTTACGACCACTCGCACGACCAGGGGGAAAACGCAAACGGGGGTCCAGCAGAGAAGCTGGAGAACTCGACCACTGAGTCGTCTCTTCTCGACACCTTGATGGGCAGAAAGTCTGCGAAGAAAAATTCAGAGGTGGCGAAAGTTGAGCCAGCTGAATCGGCAGAGTCGGTGCCGCTAGTGTGCAAGTCTGCAAGTGCACACAATCTAGCGGCAGACAAGAAACCTGTGCATCTTCGGACCTCGATGCTGCAGAAGTCTCTGAGCGTCATTGCCAGCGCCAGGGAGAGGACACTCGGGCTCGCGGGGAAGACCCACAGTGTTGAAGATGCCAGCAAAAAAGGTCTCAAAGCTCGAGACACCAGGATGCTCTCAGAAGTAGATGAATCACCGGAATGTTTCCCGAAGATGATCATCAGCCAATCGGTCGAGTACACCAAGACCCCAAGCAAAATGGGCATCATGAAGCAGCAAGTAAGCGGCAGTCAACCTTCCATTTGCTCTGAACCAGGAAGGAGCAGGGACCTGTACGACCTTTCCGAAGTTTGCCCATGGGAAATGGAAGATCTGCCCACTCCATCAGAGGGGAAATCTCAAAAGCATGTCTCCATTGCACCAAGTGAGACCAACACAATCCACGGGACCAGCTACAAAAGTGGACGGTCTCAGCACAAACAGAAGACctccgtccagtctccgtcaaaCCGCCGCCGCTCTAGAGACAAGGGCAGCTCAAAGGAGGAAGAGTGCGACGCTAGAAGAGAGCATGAAGGTAGAAAACTCAAGTCACCTTTAAAACTAACCGCCCACAAAGCAGAAACATGCCCTTGGGAATATGAAGATCCAGCAGCTGCTAAAGGACTGGAACCCGAGAGGATCAACCGCAAGAAAAGCGTCACTCCCACAGACGGAAATCCCAAGATCCTCCTCTCAGACCTCTCCAAGTCCACAGGAAGTCTTCTGCAGCCCCCAGCACTCATGGTGGAGATCTGCCCTTGGGACTATGACCAACCTCCTTCCCCATCCAACCAGGAGAAGACCTCAAGCCCCACTCACTACTCTAAAAGAAGGGACTCGAACGCCAAGCGGAAAGGTTCCTGCTCATCGAGAGGCAAAGGGAAAGACAAAGACGAGGATAAACAGAGGTCCAAAAGCAGAGAGCGAAGAAGCTCTTCGAGCAAACCTTCAGAGAAACGTCGCATCAGCCAAACATCAGACAGCAGCCAGGTTTCCATGACAGGATCTGGCAGAAGAAGAAGCTCCACTAAGGAGCTGGGAATCACTGACAGCAGTAAGCATGCAGAAGCTTGCCCTTGGGAAACGGAGGTCGTGCCAAGTGTCATCTCAAAAGACAAGCAGTCATCATCCCGGGGCAACCACACCACTTCCCAAACCCCAACAGCAGCATCGGCACCACCTGCTGCTACTGCAGCACCAGCGGCCAGTAAACTCAGTACGGCTGACGTGTGTCCGTGGGATTTCGAGGACAAGTCATTAGGGAACCGTGCATGACACGTTTACTCACATCCAATCTTTTTTGGGGAAAAAGAACTGTTGATTTTtactcactgtaaaaaaaaactgtttcaaAACTGGCTTCCTGAGACAACTAACGATAACATGGAACGTGGAAGTTCCATCTGAGGAATGCCTTACGTCAActcttgtttgtttgattaaggaatttttaaagcacaaatcacctaaaatcatttaaaaacttaaaaatctcaaatatgtttgtttttttgtttttaggaaCATGTTGCATCCTGGGGATTTGAAATCACAGCCTAATTCACTGGCTCtttgtttacatgcactttaaGACACACAGATGGGGAAAATGTCCTGCTGGACGAATGGTCGAAAAGAGTTCAGAGCAACTTGAGATTGAGATttggaaagagttttaaaaattgatggttttatgtattttttaaaacacaggaaTCTGGGCTGCtgcctttttatgtttttatgataGGGCTGTTCAATTCCACAAATCTTTGAGCTGATTAGTAATTCTGATTCTGAGTCAAAGTGTTGAGAATTTATACATTTGGAGAAATTGATACATAGGATAGCAAGTCTGGTAAAATGTCAAGAAAACCaagaattaactttttttataaaatcacaTTCTTCACTTTTTGTAATTAAATTCTAAAGCTCAGCCCTAATTTAAGATTATCTTCTAATCTCAAATGTCTTCAACTCTTCAGTTCTTCAACTCAGGCCTTGATTCCAGTTTTTCTCGTTCACCAACAGTGATTATTAAATCAAGGACCACTTAAAGAACTGGATTCAGGGTGTTTAGGCTACATTTGCACAGCAAGAAAAAGTGCCCTAAAttccctatctggacaggattagtttctcagggggttctggggaaattttctcttttatgggattttttttatcctctg

Function

GO: NA

KEGG:

id description
K08469 GPR158; G protein-coupled receptor 158

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU186653 lncRNA upstream 29574 2289092 ~ 2292464 (+) True G137960
TU186644 lncRNA upstream 76377 2244516 ~ 2245661 (+) True G137951
TU186635 lncRNA upstream 84348 2207367 ~ 2237690 (+) False G137943
TU186636 lncRNA upstream 84348 2233549 ~ 2237690 (+) True G137943
TU186621 lncRNA upstream 293230 2025193 ~ 2028808 (+) True G137930
TU186677 lncRNA downstream 23640 2386510 ~ 2480525 (+) True G137972
TU186686 lncRNA downstream 27323 2390193 ~ 2390812 (+) True G137973
TU186688 lncRNA downstream 31126 2393996 ~ 2394911 (+) True G137975
TU186690 lncRNA downstream 37687 2400557 ~ 2400842 (+) True G137977
TU186691 lncRNA downstream 44386 2407256 ~ 2408538 (+) True G137978
XM_022677781.1 mRNA upstream 91973 2102221 ~ 2230065 (+) False dpp6
XM_022677782.1 mRNA upstream 91973 2117336 ~ 2230065 (+) False dpp6
XM_022677780.1 mRNA upstream 91973 2126366 ~ 2230065 (+) True dpp6
XM_022677783.1 mRNA upstream 91973 2163875 ~ 2230065 (+) False dpp6
XM_007229162.3 mRNA upstream 407019 1869474 ~ 1915019 (+) True LOC103042278
XM_007250619.3 mRNA downstream 33087 2395957 ~ 2405369 (+) True LOC103040438
XM_007250620.3 mRNA downstream 33088 2395958 ~ 2405369 (+) False LOC103040438
XM_007250621.3 mRNA downstream 60038 2422908 ~ 2431028 (+) True LOC103040954
XM_007250622.3 mRNA downstream 102461 2465331 ~ 2473513 (+) True LOC103041271
XM_007250624.3 mRNA downstream 103020 2465890 ~ 2473513 (+) False LOC103041271
TU186618 other upstream 297652 2022755 ~ 2024386 (+) True G137929
TU186579 other upstream 483521 1835477 ~ 1838517 (+) False LOC103042893
XR_002650979.1 other upstream 683783 1626955 ~ 1638255 (+) True LOC111194189
TU186490 other upstream 822082 1497299 ~ 1499956 (+) False G137826
TU186409 other upstream 1282112 1037869 ~ 1039926 (+) False mrps14
TU187669 other downstream 1438983 3801853 ~ 3815437 (+) False LOC103047488
TU187722 other downstream 1470385 3833255 ~ 3834460 (+) True G138701
TU187723 other downstream 1470385 3833255 ~ 3834460 (+) False G138701
TU187791 other downstream 1733146 4096016 ~ 4102214 (+) False LOC111194271
TU187783 other downstream 1803172 4166042 ~ 4171980 (+) False LOC103023077

Expression Profile