RNA id: XM_022677844.1


Basic Information

Item Value
RNA id XM_022677844.1
length 1844
RNA type mRNA
GC content 0.48
exon number 2
gene id LOC103033521
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 4052730 ~ 4065474 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tgtgagtgagtgagtgtcgGAGCGCGTGTTTATAATCTCGTGGAGCCGCTGAGTGGATGAGTTGAGGAGATTCAGTTTTTTACACGGAGGAACATTATCGCTGGAGGACTTTTCAGCAGGGTCGCGGTTCTTCTGCCTGTTGCTCTGAATGAGGTTTGAAATGGTCTTGGCCTGATGGAGCACCGAACTGAGAAGATCCGTAACCCAGGTCCGTGTCGTGTTTAGGGCCTGACTGTGGCTGAAGTTGTGGCTCAAAGTGTCCAGGATGGTTGTGAATTTCCGCCGGTTCAGGAAATGTCAAGTTCGACAGCTGATGATGACATGCTTCGTGATATCAGCAGTCATGGTGTACTGGGAAAGTAGTGACAGCAATTTAACAAATCATGTGAAGTCCTACTCGTTACGGCACCTGCTCAGCAGCCTCGACTTCATCAGTGCCAACCTGACGATTAGTCGAGGAGAGGCACGGAGGTTCAGTGACCACCAGTACTTGATAAACCACGAACAGAAGTGCACCAACAGGGATGTCCTGCTTCTGCTGTTTGTGAAAAGCTCGCCGGAGAACTTTGAGAGGAGGCAGGCCATTCGGTCAACGTGGGGCAATGAGGCCTACATTGAGAGGACCTTGGGCGTGAGTGTGAGAGTGGTTTTTGCACTTGGCCTTCACCCTTCTCCCTCGCAGAGAAAGAAACTGCAAGAGATGCTGCATCAGGAAGATGAGAAGTACAACGATTTGATCCAGCAGGACTTCCTCGATACTTTCCACAACCTAACCATCAAGTTACTCCTGCAGCTAGGCTGGACCCATGCATACTGTTCCAACGCCCAGTTCCTCATGTCTGCAGATGACGACATCTTCGTCCACATGCCCAACCTTATCCACTATTTGCAAGAGGTCAGGCGCTCTGGAGTGAAGGACTTCTGGGTTGGAAAGGTGCATCGAGGCGCTCCGCCCATTCGTAGGAAGGACAGCAAGTACTATGTGTCAGAAGAGATGTACCCCTGGTCAATGTACCCTGATTACACTCCTGGGGCCGGTTACGTTGTCTCGAAGGACGTGGCCGCCCGGGTCTACGAAGCTTCCCTCACTCTGAACGCCTCTCTTTACATCGATGACGTCTTCATGGGCATTTGCGCCAACGCGATGGGGATTTCTCCCCAAGAGCACGCCTTCTTTTCTGGAGAGGGCAGAGCCCCTTACCACCTTTGCATTTACAACCAGATGATGACTTCACACGGACACGTGAAGGACTTCCATGAACTCTGGAGACTTGCGACAGACCCCGAGGTGCAGAAAGTGTCTTTGGGGCTTTTAGGAAAGCTTTATTGCACTGTGGCTAAAATCAGACTCCTCTGTGTACCACAATTTCAGAACACCTATCCTTGCAGAGCAGCATTCTTATAATAGGACTTATAACAGGACTTTAGTATGAGGTCACCTGTTGCGTTCGCTCGCCCCCAGCATCTTCACACCTTTTTTCACACCttattttttgtagtatttatttgtgtaacTTAACAATATTTTGCGCCTTTATAGTTGAATAGTATAGAATAGTCCTATGAAACTACATTGCTTTTGTGAAAAGGTGTGGGGGTGTGTTTGGTATTGTGTGACAAGGCCTATTTATGGTGATTGACACGTAATACAAGTAAGACATGGGTTTTGATCATGAGCCCACCTGTTAAACCACCTCTTCCCAAATTGTTTTGagagcagctcaaaaagaagttATGAGGAGCACCCTGGACTTTGGACATTTTAGACAGTTACATAAAATGAGGCCTTTAAACTAGTAAACCATATTTCAACCCTTTCTATATTTTGAAAGaatctgttattt

Function

GO: NA

KEGG:

id description
K03766 B3GNT5; beta-1,3-N-acetylglucosaminyltransferase 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU187772 lncRNA upstream 12872 4036371 ~ 4039858 (+) True G138744
TU187754 lncRNA upstream 145607 3881551 ~ 3907123 (+) True G138731
TU187666 lncRNA upstream 299320 3720938 ~ 3753410 (+) True G138671
TU187668 lncRNA upstream 319270 3732030 ~ 3733460 (+) True G138672
TU187658 lncRNA upstream 370800 3681726 ~ 3681930 (+) True G138665
TU187781 lncRNA downstream 3313 4068787 ~ 4072088 (+) True G138747
XR_002651006.1 lncRNA downstream 30523 4095997 ~ 4102241 (+) True LOC111194271
TU187795 lncRNA downstream 39506 4104980 ~ 4114118 (+) True G138758
TU187782 lncRNA downstream 107297 4172771 ~ 4175585 (+) True G138748
TU187942 lncRNA downstream 171195 4236669 ~ 4237527 (+) True G138840
XM_007250680.3 mRNA upstream 6091 4022436 ~ 4046639 (+) True LOC103032574
XM_022677843.1 mRNA upstream 49814 3995942 ~ 4002916 (+) True LOC103021527
XM_022677694.1 mRNA upstream 110250 3901154 ~ 3942480 (+) True LOC103031935
XM_022677693.1 mRNA upstream 213358 3804787 ~ 3839372 (+) True LOC103047488
XM_007250674.3 mRNA upstream 454128 3585149 ~ 3598602 (+) True LOC103030773
XM_007250681.3 mRNA downstream 10014 4075488 ~ 4080104 (+) True dcun1d1
XM_022677846.1 mRNA downstream 15538 4081012 ~ 4095442 (+) True ccdc39
XM_022677854.1 mRNA downstream 76622 4142096 ~ 4154519 (+) False LOC103022774
XM_022677855.1 mRNA downstream 76890 4142364 ~ 4154519 (+) False LOC103022774
XM_022677853.1 mRNA downstream 78759 4144233 ~ 4154519 (+) True LOC103022774
TU187722 other upstream 218270 3833255 ~ 3834460 (+) True G138701
TU187723 other upstream 218270 3833255 ~ 3834460 (+) False G138701
TU187669 other upstream 237293 3801853 ~ 3815437 (+) False LOC103047488
TU186618 other upstream 2028344 2022755 ~ 2024386 (+) True G137929
TU186579 other upstream 2214213 1835477 ~ 1838517 (+) False LOC103042893
TU187791 other downstream 30542 4096016 ~ 4102214 (+) False LOC111194271
TU187783 other downstream 100568 4166042 ~ 4171980 (+) False LOC103023077
TU187927 other downstream 178524 4243998 ~ 4245864 (+) False G138839
XR_002651008.1 other downstream 637872 4703346 ~ 4707243 (+) False LOC103039271
TU188084 other downstream 637878 4703352 ~ 4708095 (+) False LOC103039271

Expression Profile