RNA id: XM_022677884.1


Basic Information

Item Value
RNA id XM_022677884.1
length 1834
RNA type mRNA
GC content 0.57
exon number 11
gene id LOC103027706
representative False

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 5031419 ~ 5045009 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCTCAGTATCCGTGGGTGGCGCTCCATCTGCTAACCTCCTGATCTGCTCCCAGCTTTCCCCTGCAGGAGCGGAGCTCAGCGCCGGGCTGGGAGCGGCACTGTGTGGATTATATGCTCTGAGGAGATGACTGTGCTGGAGAGGATTGATGGCTGTGCAGATGTATATATAAGGATTCATACCATGCAGTGAACCAAATGGGTCATTGCTGCACCCGAGTCATTttcctcctgctgctccagGCGTTGCAGACGTTAGCTGAAGATGGGTCtattgactgtgtgtgtgtgggcagcgACTGCATGTCGCAGCTGTGTAAGGGAGACCACTGCTATGCCTCCGTGACCGTCAGCAACGACGTGCCCTCGTTCCGTCGTGGGTGTCTGATTGGCCCTGAGAGCAGGCACATGACCTGCTTGTCCGGCCCCTCGGCTAATCGCGCGGTCGAGTGCTGCTCTCAGCCCATGTGCAACGTCAACGCCACGGTGGAGTCTCTGCTCCAGCTGCTCACCAATCCAGAGGGTGAGCCTGTGCGCTATCGAGTGGAGACCCTGGTGCTGTTCGTGCTGGGTCCCTTTGTGGTTCTGGCTCTGCTGGCCACTCTGGCGGTGCTGGTCTGCCGCAGGCTCCACCCGGGCCGGCTGGAGAGACTGCACGAGTTTGACCCGGAACAGGGCGCCATCGACGGCCTCATTGCCCCCAGCGTGGGGGACGGGACCCTGGCGGATCTATTGGATCACTCCTGCACGTCCGGCAGTGGATCAGGACTGCCCTTCCTGGTGCAGAGGACCGTGGCCCGTCAGATCAGTCTGGTGGAGTGTGTTGGGAAAGGGCGGTATGGGGAGGTATGGAGGGGACAGTGGCAGGGAGAGAATGTAGCTGTGAAAATCTTCTCCTCTAGAGATGAGAAGTCCTGGTTTCGGGAAACAGAGATCTACAACACTGTTCTGCTGCGGCATGAAAACATATTGGGGTTCATGGCGTCGGACATGACCTCGCGGAACTCCAGCACCCAGCTGTGGCTGATCACGCACTACCACGAGAACGGCTCGCTGTACGATTACCTGCAGCGGGTGGCCGTGGACATGGCCCACGGCCTGCAGATGGCCGCCTCAGTGGCCAGTGGCCTCGTGCACCTGCACACTGAAATATTCGGGACGGAGGGTAAGCCGGCCATCGCCCACCGGGACCTGAAGAGTAAGAACATCCTGGTGAAGAAGGACCTGCGCTGCTGCATCGCTGACCTCGGCCTGGCAGTCACCCACTCTCAGGCAGACAATCAGCTGAACGTTGGGAATAACCCCAAAGTGGGCACCAAGCGCTACATGGCCCCCGAAGTGCTCGATGAGTCCATTCAGACGGACTGCTTTGACGCCTACAAGAGGGTGGACATCTGGGCCTTTGGTCTGGTGCTGTGGGAGATCGCTCGGCGCACCTACAGCAACGGGATCGTGGAGGAATACAAGCCTCCATTCTATGACCTGGTGCCTAACGACCCCAGCTTTGAGGAAATGCGCaaagtggtgtgtgtggagcagcagagaccATTCATCCCTAACCGCTGGTTTTCAGATCCGCAACAGGATTGGACGGTGGCCGGACTGTTTGAGCCAATAGAATAAAAGCGAAGCAGTGTGTTTTCTTCCAAGAATGTGGATTAAACTCCCAACATCTGACTGATGCACTGAGATGCACTCTTCTAGAtcctggatctttgaagctttGCCTTCCACTTCCTGTAACAGAAGCTCACAACCAGATGGAGGAGATGATGGTGATTCTAAAGcactatctggacgggattagtttctcagggggacatctttaaaaaaaaaa

Function

GO:

id name namespace
GO:0003342 proepicardium development biological_process
GO:0021556 central nervous system formation biological_process
GO:0003140 determination of left/right asymmetry in lateral mesoderm biological_process
GO:0003146 heart jogging biological_process
GO:0046588 negative regulation of calcium-dependent cell-cell adhesion biological_process
GO:0042475 odontogenesis of dentin-containing tooth biological_process
GO:0051216 cartilage development biological_process
GO:0048264 determination of ventral identity biological_process
GO:0030510 regulation of BMP signaling pathway biological_process
GO:0051260 protein homooligomerization biological_process
GO:0006468 protein phosphorylation biological_process
GO:0003230 cardiac atrium development biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0035124 embryonic caudal fin morphogenesis biological_process
GO:0048332 mesoderm morphogenesis biological_process
GO:0001889 liver development biological_process
GO:0035162 embryonic hemopoiesis biological_process
GO:0060030 dorsal convergence biological_process
GO:0001944 vasculature development biological_process
GO:0001947 heart looping biological_process
GO:0035462 determination of left/right asymmetry in diencephalon biological_process
GO:0005938 cell cortex cellular_component
GO:0070724 BMP receptor complex cellular_component
GO:0005515 protein binding molecular_function
GO:0005524 ATP binding molecular_function
GO:0005024 transforming growth factor beta-activated receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU188219 lncRNA downstream 2714 5027920 ~ 5028705 (-) True G139040
TU188222 lncRNA downstream 25128 5005492 ~ 5006291 (-) True G139043
TU188177 lncRNA downstream 176727 4838866 ~ 4854692 (-) True G139003
TU188203 lncRNA downstream 193346 4821203 ~ 4838073 (-) True G139027
TU188206 lncRNA downstream 194888 4835782 ~ 4836531 (-) True G139029
TU188265 lncRNA upstream 164178 5209187 ~ 5276039 (-) True G139073
TU188308 lncRNA upstream 273565 5318574 ~ 5318816 (-) True G139098
TU188318 lncRNA upstream 297472 5342481 ~ 5342814 (-) True G139108
TU188320 lncRNA upstream 299820 5344829 ~ 5346034 (-) True G139110
TU188362 lncRNA upstream 396777 5441786 ~ 5442427 (-) True G139149
XM_022677874.1 mRNA downstream 225752 4771793 ~ 4805667 (-) True LOC103027391
XM_007250705.3 mRNA downstream 264126 4761753 ~ 4767293 (-) True LOC103039917
XM_022677872.1 mRNA downstream 282666 4738988 ~ 4748753 (-) False LOC103039099
XM_022677888.1 mRNA upstream 522175 5567184 ~ 5598775 (-) False ccdc24
XM_022677889.1 mRNA upstream 522175 5567184 ~ 5596954 (-) True ccdc24
XM_007229297.3 mRNA upstream 579850 5624859 ~ 5898800 (-) True b4galt2
XM_022677908.1 mRNA upstream 932258 5977267 ~ 5997977 (-) True LOC103034342
XM_022677909.1 mRNA upstream 932258 5977267 ~ 5981249 (-) False LOC103034342
XR_002651007.1 other downstream 693222 4333133 ~ 4338197 (-) False LOC103034146
TU188021 other downstream 693325 4335991 ~ 4338094 (-) False LOC103034146
TU188022 other downstream 695530 4331650 ~ 4335889 (-) False LOC103034146
TU187750 other downstream 1179737 3848000 ~ 3851682 (-) False LOC103047802
TU187730 other downstream 1197749 3832721 ~ 3833670 (-) True G138708
TU188266 other upstream 231097 5276106 ~ 5276468 (-) True G139074
TU188315 other upstream 285069 5330078 ~ 5330805 (-) True G139105
TU188844 other upstream 964044 6009053 ~ 6010867 (-) True G139489
XR_002651012.1 other upstream 977600 6022609 ~ 6054339 (-) False LOC111194281
XR_002651013.1 other upstream 1075110 6120119 ~ 6124125 (-) True LOC103026010

Expression Profile