RNA id: XM_022677889.1


Basic Information

Item Value
RNA id XM_022677889.1
length 2007
RNA type mRNA
GC content 0.51
exon number 8
gene id ccdc24
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 5567184 ~ 5598775 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gatgaaaacataattttgtcccacccctaattcTGATGGCAGTTCAGATCATAAAAACACGGGTTTGGTATGAGAGCTGGTCTGAGAGCTCGGGGGTGGGGGTACAGGGCTGGTTTAACGTTCTCCATGCTCTGCTGGTGCTTTGAAGTGTAGTTCTGGAGGAGGGGGTGCAGGGTGGGTTTGAGGCCAGGTGTGAAGGGCAGTAGTTGGGTTCAGGCTGTGTTCCTCACTGTGATTATTCCTACTGTTTGCCTTTCCTCCTTCTGTTTTTCTCATGTCTGCTGGCTTGCAGTCACATGCGTGTGGATCAGGTCCAGATTCTGAAAGTTTCCTGCCTCTGCAGACGCCGAGTGTTTAACTTGGGAAGAAATTCTACCCAACTGACGGCACATATGGTGCCTCTCATGTAGTGGCGACTATTGTCCAGATTTGAGGGAACATAAGGTTCAGATGTTGGAGCGGATTTGGAGAAATGTGCAGGGTGGCACACCCCGGACTCCCCGGACTCCTTTAGCCGATCCCCCTGCTGTGAAGGAGCTGCTGCGGGCGgagctccagctgctgctgctgaacctgCGGGAGAGAGCCGCCAGACTGGGAAGGGATGGAGATGAAGTCGTGTCCCGGTATAATCACAGGGTGGTGAGTTATGCACTTGCTGGCAGAACAGGAAGCCCAGACAGCCAGTGTGAGACTGCAGCGCCATCCAGCAGCCCTGAACCCAGTCTCAGCCGCTGTGACAGCAGATCAAGCTCACGTCTCTCCTCACGCTCTAGTGAAGATGATATTGAAGCTTTGAGGGAAAAATTAAACGTCACCCACATAGACGAGGTTGTGTCAAATCTCAAATCAATTTTTACTGACGAATGTGAGGCTTTGAAAGAGGATGTACAGTTCCTCCAGGAGAGTGTGAAGCTGGAATATCAGAAGCAGAGGGAACCTGAGTTGGTGGAGCCCACTCTAACAGAGCTTAAAGAGGAGCGGCGCATCATCCAGAGAGACCTGAACGACCAGAGTTTGATGAGTGAAGCCTCAGATAAGCCGAAGCCCCGCTGCTGTCCCGCATCCAGCAGgTTAAAAGACTTGCCTACAACTCACTCAACCTCACTGGTGCCACCCGGCATAAATCATCTTTACCCAAACCCTTCTCCTCCTGACATCAGCAGACCCGCTCATACAATCCAGCCCTGGCACAGAACACCCCTTAAGCTCATGCAGCCTCTGCACTCGTCCCCAGCTGGAGGTCAGACTCATAAACTCAACCCAGAGCCCTCCTGCAACAGTCTGACCCACCAGGCTTCCACAGCCTCCACCACAGTGGATCACCCACTGCCACTAAGCACCGCTGCTACATCCACGGCTGTGCGGAGGACGTACAGCTGCAGCATGGAGCCCAGAGAGGAAGCACTCCAAGCCTCCAGATTGACCCCGTCTGCAGGCCCAGACTGCAGGCAGCTATGTGGGTCCTCTGAGGCTGGCACCTTCATTCACTCCCAACAGCTGGGCCTGCGGGCAAAGACAGCCGGGACCGTGGCCCTTATTCCCGCTCCCCCTGCAGTGCAGAAAGTAGCCAGCAGGGGGCAGCGGGCAAACAGACAGATGGCTCTTCTTCAAGCCTCAAGCTCCTGAGAACTGGACACTGCTGCACAGTTAAAGGTTAAGGTATACTGAGGAACTTTTAGAAATTCTTAATTTAAAACGGTGAAGGAACCCCTTAAGGTGATTTAAGGAACCAAGACCTTCAAGAGCACCTGAAACCACTTTAAGATTCCTCCACAGTTTTACATTGAAGAACCCCTAAAAGTTCCTGACAGATCTCATACTTTTAACTGTGTGGACCAAGCGTCTCTGCTAACGATGTAAAACAAGGACAAATGTTCAGAAGTCTTGGACTGGGGACACTAAATTCACCTAATACAGATGAGCATCGTGGACCTTGAAGCTTGCTTGAATTGGTCAATGGCCTTCATAACTGTAATAATggtaataaatacaattataatttta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU188769 lncRNA downstream 15122 5545244 ~ 5552062 (-) True G139435
TU188368 lncRNA downstream 111162 5455746 ~ 5456022 (-) True G139155
TU188363 lncRNA downstream 124278 5442556 ~ 5442906 (-) True G139150
TU188362 lncRNA downstream 124757 5441786 ~ 5442427 (-) True G139149
TU188320 lncRNA downstream 221150 5344829 ~ 5346034 (-) True G139110
TU188790 lncRNA upstream 17835 5614789 ~ 5616029 (-) True G139451
TU188797 lncRNA upstream 74394 5671348 ~ 5671588 (-) True G139457
TU188813 lncRNA upstream 200537 5797491 ~ 5799470 (-) True G139472
TU188840 lncRNA upstream 308742 5905696 ~ 5927854 (-) False G139488
TU188837 lncRNA upstream 320641 5917595 ~ 5927854 (-) True G139488
XM_022677884.1 mRNA downstream 522175 5031419 ~ 5045009 (-) False LOC103027706
XM_022677883.1 mRNA downstream 522175 5031419 ~ 5045009 (-) True LOC103027706
XM_022677874.1 mRNA downstream 761517 4771793 ~ 4805667 (-) True LOC103027391
XM_007250705.3 mRNA downstream 799891 4761753 ~ 4767293 (-) True LOC103039917
XM_007250702.3 mRNA downstream 818437 4738988 ~ 4748747 (-) False LOC103039099
XM_007229297.3 mRNA upstream 27905 5624859 ~ 5898800 (-) True b4galt2
XM_022677908.1 mRNA upstream 380313 5977267 ~ 5997977 (-) True LOC103034342
XM_022677909.1 mRNA upstream 380313 5977267 ~ 5981249 (-) False LOC103034342
XM_022677911.1 mRNA upstream 396519 5993473 ~ 5997967 (-) False LOC103034342
XM_022677699.1 mRNA upstream 424144 6021098 ~ 6022596 (-) True LOC111194226
TU188315 other downstream 236379 5330078 ~ 5330805 (-) True G139105
TU188266 other downstream 290716 5276106 ~ 5276468 (-) True G139074
XR_002651007.1 other downstream 1228987 4333133 ~ 4338197 (-) False LOC103034146
TU188021 other downstream 1229090 4335991 ~ 4338094 (-) False LOC103034146
TU188022 other downstream 1231295 4331650 ~ 4335889 (-) False LOC103034146
TU188844 other upstream 412099 6009053 ~ 6010867 (-) True G139489
XR_002651012.1 other upstream 425655 6022609 ~ 6054339 (-) False LOC111194281
XR_002651013.1 other upstream 523165 6120119 ~ 6124125 (-) True LOC103026010
TU188831 other upstream 708015 6304969 ~ 6374709 (-) True G139487
TU188973 other upstream 820431 6417385 ~ 6430319 (-) True G139587

Expression Profile