RNA id: XM_022677925.1


Basic Information

Item Value
RNA id XM_022677925.1
length 1555
RNA type mRNA
GC content 0.42
exon number 9
gene id LOC103024705
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 6995553 ~ 7004249 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TAACCGGGAGGTGGAGTATTTATAGAGGTGTTGTGATTTCAGTCTGGATAGGTGTTGAACAGGAACCTGTAGAGatgtctctctctggctgggtgtgtgtggtgacCGGTGCTTCTCGGGGGATTGGAAAAGGAATAGCATTACAGCTTTCTGAagctggagctacagtctacaTCACTGGCAGACAGATGAAGACCCTGGAGCAGACTGCAGCTGAGGTAAATGAGAGAGGGGGTCTGTGTCTGCCGGTGATCTGTGACTCAACAAAAGACGACGACATAAAGGAGCTGTTTGAAAGAATTAAACGTGAGCAAAATGGAAGACTGGACATCCTGGTGAACAATGCGTTCGGTGGAGTGCATGCAATTTTTGACAACATGGAAACTAAGTTCTGGGAGTATGAGCCTTCTGTATGGGACGATGTCAATAACAGTGGCCTCAGGGGGCACTATTTCTGCTGTGTGTATGCTGCCCGGATTATGGTACCTCAGGGCAAGGGCCTTATTGTTACCATATCATCCATAGGTGGCTTAAGGTATCTCTTCAATGTGCCCTACGGGGTCGGCAAAGCTGCGTGTGACAGAATGGCTGTGGACACTGCGGTGGAGCTGAAGAGCCTTGGGGTGGCTTCTGTGAGCCTGTGGCCGGGGGCGGTGCAGACAGAGCTCGTTAACGAGCATGTCATAGAGAAAGAAAAGCCTCCAGGCTTTGATGACAATTTCAAGGAAGTCTACAACAAAGGAGAGACAATAGAGCTGAGTGGAAAATGCATTGTTGAACTGGCCAAAGaTAAAAATCTGATGAAACTAACTGGAAAGGTGTTGTTGACGTGTGATCTGGCCAGGCGCTACAAATTACGAGATGTTGATGGCCGTGACATCTTTGATTTAAAATCTCTGAAGTTCCTCCTCACACAGTCTCCGTCCACGTCCTGGCTCTCCGTCATCACACCTTCATTTATCAGAGTGCCATCGTTTGTCTTTGGCCTGGCCTCCAGCAAATTCTGACCTGCATCTGATGGAAACAGTCACAAATGTATATGCATACCAGTTAGTTAGTGCTACACAATTCATTTTAGCATTAACACCACAGTGTGCTTATGCTCAGTAATTACATTGTGAATGTGTATTGTCTTATACCAAACATGTCATACtacaacatttttttgcattcattcattttcctcccttttttttacctttttgcaCCAAAGGTGCTTGTCTGTTTTTAAGGACAGTTCTAAAATTATTGGTATGTAATTGCTTCCCAATACAGTGCAGGTTGATTAAGCATTTATACATTGTATTTAGAgtgaaatgcttttttttccttgtGTAATTTATTCTAAACTAGCTTGAGTTGcagttatttttaaaagagcattatcatttttttctagCTTAACTTATGAACCCTTATGTGCATTTGTGGTTCTTAGCTGGTCTGTGTGTTCTCTTTTATGTTCTGAAAACCATATATCTTAAATAATATtgcttttaataaatgtataactCTTAAAGTTTGTAgatgcattgtttaaataaaacccttttga

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016491 oxidoreductase activity molecular_function

KEGG:

id description
K11163 DHRS1; dehydrogenase/reductase SDR family member 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU188697 lncRNA upstream 62080 6931518 ~ 6933473 (+) True G139375
TU188689 lncRNA upstream 85892 6853944 ~ 6909661 (+) False G139371
TU188688 lncRNA upstream 138583 6853944 ~ 6856970 (+) True G139371
TU188679 lncRNA upstream 172867 6821915 ~ 6822686 (+) True G139362
TU188658 lncRNA upstream 227309 6768023 ~ 6768244 (+) True G139347
TU188727 lncRNA downstream 25033 7029282 ~ 7032672 (+) True LOC111194296
XR_002651017.1 lncRNA downstream 27561 7031810 ~ 7039380 (+) False LOC111194296
TU188725 lncRNA downstream 42169 7046418 ~ 7049729 (+) True G139395
TU188732 lncRNA downstream 82728 7086977 ~ 7087682 (+) True G139401
TU189130 lncRNA downstream 187659 7191908 ~ 7192404 (+) True G139710
XM_022677926.1 mRNA upstream 6182 6975971 ~ 6989371 (+) True LOC111194294
XM_015608064.2 mRNA upstream 26354 6958536 ~ 6969199 (+) True LOC103043149
XM_007258047.3 mRNA upstream 45409 6945678 ~ 6950144 (+) True c16h14orf119
XM_007258040.3 mRNA upstream 103654 6864807 ~ 6891899 (+) True LOC103041213
XM_007258038.3 mRNA upstream 143290 6842902 ~ 6852263 (+) True LOC103040698
XM_007258049.3 mRNA downstream 1215 7005464 ~ 7018530 (+) True LOC103043453
XM_007258052.2 mRNA downstream 37311 7041560 ~ 7046298 (+) True LOC103044361
XM_007258067.2 mRNA downstream 155771 7160020 ~ 7162262 (+) True LOC103025339
XM_007258057.2 mRNA downstream 160535 7164784 ~ 7184403 (+) True psmb5
XM_022677940.1 mRNA downstream 160636 7164885 ~ 7184403 (+) False psmb5
TU188586 other upstream 728166 6266816 ~ 6267387 (+) True G139282
XR_002651011.1 other upstream 752982 6238156 ~ 6242571 (+) True LOC103028159
TU188563 other upstream 835387 6159720 ~ 6160166 (+) True G139268
LOC111194289 other upstream 851652 6143375 ~ 6143901 (+) True LOC111194289
LOC111194229 other upstream 853955 6141005 ~ 6141598 (+) True LOC111194229
TU188724 other downstream 37425 7041674 ~ 7046288 (+) False LOC103044361
TU189488 other downstream 2157084 9161333 ~ 9162505 (+) True LOC103030954
TU189503 other downstream 2218360 9222609 ~ 9223156 (+) False LOC103030224
TU189594 other downstream 2535526 9539775 ~ 9540810 (+) True G140062
TU189643 other downstream 2739449 9743698 ~ 9745355 (+) True G140103

Expression Profile