RNA id: XM_022677941.1


Basic Information

Item Value
RNA id XM_022677941.1
length 1545
RNA type mRNA
GC content 0.42
exon number 3
gene id LOC103025648
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 7230536 ~ 7250133 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gcacacacacacgcactgagATGGTAACCAAGATTacgatgatgaagatgaagctgGTGATGGTGGTGCTGGCAGCACATCTGCTGAACGTGAATGCTGCgacgcagcagcagcaacagagacagCAAAAATTGCAAGATTTAGACTTTATAGGAGACCTGTATAGTCGcatcgaggaggtgaaaaaaatgTGTCAAGtgaaAAAAGTGGCCTTCACCGCGGCTCTGGTGCCCTCTGACGTTAAGGGTGAGGGAATAGGAATAATAGGACCCTTCTCCTCTAACACCATCCTCAGACACCGCCGTGTCATCACCAACATTGGCAATGCCTACAACCCACAGACAGGCGTATTCACCGCTCCAGTGAAGGGCGTTTACTTTTTCACCTTCACCACCTACAGCTGGGTGGCCAAGGCTACCATCGGTGTGAGTCTCTACCGGAACAACGAGGAGGTGCTACTGATCTGGGAGTGGCAGGACGCCGGAGATAATGAAGATTACGCCTCTAACTCGGCCACTCTGGTCCTGATGCAGGGCGACATCGTGTACATCAGCCTGCCCAAGGGATTCCAAGTGGCGGCCAGCATTTTGTCCAACATGCATACCTTCTCTGGGTTCATGCTCTACCAGCTCTGATCTGCTGGTGCCTTCTTTTCAGCTTTCGCATTCATTTTTCTGTGCTCTTTTgatgtaattattaattatctatttGATTACATAGAGAATCGAAAGAgtctgcactgtaaacccagaagttgtttaaactcatattataaataagtatattttacataaaattggatatttctaaacaatgcTCAACTATTTTGAATTTTAGTCTGTtaccattggcagcttcttttccattggcttctgttacaatatatttgcatactgggtgtgtccaacagtttctgacagacactcaccatcagtgtgtagtgattccccctgggctaccttaataaataataattaataaatcaagttcTTCTTTAGttataataacttgatgttttaattaatgCTAACCCAAGTTTTCAGTCCCAAATACTTAACTTTTATAaggtaaattcaacttatccaggcttacagtgtagagaACCTTTTTCCATGTGCTACAAATGCAGGTATTGCTACGAATGTATCATTAAAGGGAAATGCCAGGTGTTTCTAGAATCAATAAGATGAAAAGAGTTTAAGAGACTAAGACTAGGGAACAATCACCCACGGATCAATCATTTACATTTGAATGCTTGGTTAtgctgctttgccatcagcagccggagtccgagagacaGCACAGTTGCCCATGCTGTCTTTTTGGTGGGTAGTTATAGGGGATAAGAGTCTGAGTGAGTGGGGTAAAATGGCTCAGCTACAATTTTAGAAAGGAAACAAATTGACAATAATtgttaataagtaataatacgTAATTTAAAACCAATGTGAACCATTCAGCCAATCATAAAGGAGTCTACAAACTCAAATTAAACCAAATCATACTGCACCGTTTAAAGTTCAGACAGTGTTAGCAaagcaaact

Function

GO:

id name namespace
GO:0008237 metallopeptidase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU189132 lncRNA upstream 27280 7202932 ~ 7203256 (+) True G139712
TU189130 lncRNA upstream 38132 7191908 ~ 7192404 (+) True G139710
TU188732 lncRNA upstream 142854 7086977 ~ 7087682 (+) True G139401
TU188725 lncRNA upstream 180807 7046418 ~ 7049729 (+) True G139395
XR_002651017.1 lncRNA upstream 191156 7031810 ~ 7039380 (+) False LOC111194296
TU189165 lncRNA downstream 225837 7475970 ~ 7476346 (+) True G139737
TU189166 lncRNA downstream 256919 7507052 ~ 7507357 (+) True G139738
TU189175 lncRNA downstream 289526 7539659 ~ 7539943 (+) True G139747
TU189178 lncRNA downstream 318234 7568367 ~ 7568570 (+) True G139750
TU189147 lncRNA downstream 378107 7628240 ~ 7660131 (+) False G139720
XM_007258057.2 mRNA upstream 46133 7164784 ~ 7184403 (+) True psmb5
XM_022677940.1 mRNA upstream 46133 7164885 ~ 7184403 (+) False psmb5
XM_007258067.2 mRNA upstream 68274 7160020 ~ 7162262 (+) True LOC103025339
XM_007258052.2 mRNA upstream 184238 7041560 ~ 7046298 (+) True LOC103044361
XM_007258049.3 mRNA upstream 212006 7005464 ~ 7018530 (+) True LOC103043453
XM_022677942.1 mRNA downstream 84871 7335004 ~ 7654533 (+) True LOC103025951
XM_022677943.1 mRNA downstream 84871 7335004 ~ 7654533 (+) False LOC103025951
XM_022677944.1 mRNA downstream 84871 7335004 ~ 7651967 (+) False LOC103025951
XM_022677945.1 mRNA downstream 437974 7688107 ~ 7693776 (+) True LOC107197863
XM_022677702.1 mRNA downstream 448228 7698361 ~ 7706542 (+) True LOC111194231
TU188724 other upstream 184248 7041674 ~ 7046288 (+) False LOC103044361
TU188586 other upstream 963149 6266816 ~ 6267387 (+) True G139282
XR_002651011.1 other upstream 987965 6238156 ~ 6242571 (+) True LOC103028159
TU188563 other upstream 1070370 6159720 ~ 6160166 (+) True G139268
LOC111194289 other upstream 1086635 6143375 ~ 6143901 (+) True LOC111194289
TU189488 other downstream 1911200 9161333 ~ 9162505 (+) True LOC103030954
TU189503 other downstream 1972476 9222609 ~ 9223156 (+) False LOC103030224
TU189594 other downstream 2289642 9539775 ~ 9540810 (+) True G140062
TU189643 other downstream 2493565 9743698 ~ 9745355 (+) True G140103
TU189871 other downstream 2739785 9989918 ~ 9990296 (+) True G140258

Expression Profile