RNA id: XM_022677942.1


Basic Information

Item Value
RNA id XM_022677942.1
length 6757
RNA type mRNA
GC content 0.53
exon number 14
gene id LOC103025951
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 7335004 ~ 7654533 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGTCTGGAATCTGGAATCTTTGGGCGCAAAGCAGGAATTTTACTTGGACAGCGCTCAAGTCCATCACAAGGGCGATCAACCCTCCGCGGGAAGCTGAGTGAACGGTTCTGCCCTGAGAGGTTCGgattgagagagtgagatactggaaaagtaaaaaaaaaaaaaaaaaaaagagagagagagagagagaaagagagagagactgcgtGACTGACACCTGCCCTGCAGCTTTGGCAGAGGACGTGTAATGGAGGAGTGAAGACGTGGAGGGAGCGAGGAAATAGACGCGGAAGAAAGAATGAAGACAACCAGAAAACCAGCGCTTCCTTCCATTCGCTGTCACTTAAATTAGATCACTACACCTCCAATCACTCAACATGACTGACAGGTGTGTCCTCCTATTAGTGTCCCTCTGCCTGTGGGAAGGGTCGGTCCTCTTGGGTTCAGGGTCGGTCACGAAGGTTGTCAGGAGAAGAGGACTTGGATCGGTTCATTCCCTTCAATCGCACGGAGGCCTTGGAGAGACCATGCCACGGGATTTAAGTATGGAAAAGAACGGGATGCCGTTAGTTCGGCTAAAAGAACTGATTGGTGCTGAGAAAGTGGACGACAAGGCTGGGGGCCACTCAAAAGGTGCTCAACCGAACAACGAAGGACCGTCGGTCTCAAACCAAGACGAGCTCCTTGATTATAACTCTAAATCGCCTCTTCAGTCGGATGACTCAAATAAAAGGGTACGCCTGGCAGTGGATGGTACTAGAGACGTGCTTGAGTCAAGAAAGTATAGGAATAGCACGAACAGTGGACAAATAGAAAAGGGAAATCCAGTTCACCACAAGGTGGACTCTAGTTTACACCTAAACAGAACCAGATTCAAGTATCCTCCGAGGTCCAGAGGGAGGCCAAGCCCCGGGACTCTCAGCAAAGCCAGAGTTCCAAAGGGAGTGCCGCAAGACTCGCCCCACAAAATCAACCTGACTGGAAGCTACGGCGTTTTGAAGCTCATCTCAAAAGAGAGTCTTGTGCGGATCGTGAATTCCCAGCTGCAGAATGGTCTGAATTTTCAGAACAAGATTAGTCAcagcagaaagagagatttGATTGATATGGATCGCAGCCAAGCGGAGCAACCTGAAATAAAGAGGAAAGATCGGGCTGTAACTCCAGATGTTCACGAATCTGAGATTCATAATAGGACTCTAATTGCCGAGCCACACTCGAGCACCATCACAAATCCCAATGTTAATCCAGATCAGATGGGTCACACTCTCTGGAAACCAATTAGTGAACTCACTTCAAGTTCAAGAGAGGATGAAAAGAAGACAGAGGCCAGGGGTATAGCTGCCACCGCTTCTTGGAGGAGCAAACATTATACCACCCACGTGACTTCAACGGCGCAAAGCGAGCTTGTCGCCAACACGGAGGTCAATCGTGATGCTTTTACCGGCAACAGTGATTCTTCTGTCAGTGCGCATGAAGGAATATCGCACGCCGCCTCTCAGACTGCCTCTGAAATCTCTGCAAGAAAGAGCTACTCTGTGGAGCCAGAAGCTGAAAGAGGCATTAATGCGAAAGAGGATCAAGGTCAGGATATTCACACGACAATACCGGAATTCAGTGCCACGCAGGATCCCAGTAAAGCTTCCGATTCTGTGGACAGCAGTCACATTTTGAAGCTGCCCCCAAATCCAGAGTGGGGTGGAGGAACTAGCAGTCGAGGGACCACTGTGGATACCTGGCCTGGCCAAGGTGGGCATGGCCTCGTCTTTGAGGAGACGGAGGAAGATGAGGATAAGAGTTGGAGTCCGAAGCAAGGACCGCGTTCGAGAAGACGGCGCAGTTGGATCTGGAACCAGTTTTTTGTTATCGAGGAGTACGCCGGACCAGAACCTGTCCTCATCGGAAGGctgcaCACTGACATGGACAGAGGTGATGGGCGCACGAGGTACGTGCTCCGGGGCGAGGGGGCGGGCTCCGTGTTCGTGATTGACGACAAGACGGGCAACATCCACGTGACCAAGCCCTTGGACAGGGAGGAGAAGGATGAGTACCGGCTGATCGCCACGGCAACAGACAGCCAGACGGAGCGTGCCTTGGAGCCCTCGTCCCAGTTCATCATCAGGGTGCAAGACATCAATGACAACCCACCTGTGTTCGAGGACGGGCCCTACAGCGCCACCGTCCCCGAGATGGCCAACATAGGTACGTCCATCGTTCAGGTGACGGCGACGGACGCGGATGACCCCACCTATGGGAACAGTGCTCGGCTGGTCTACACGCTGGTCCAAGGCCAGCCACACTTCTCTGTTGACCCCCAAACAGGAATTCTCCGCACAGCTGTGCCTGACCTGGACAGAGAGACCCAGGATCAGTACCTCGTGGTGCTTCAGGCTAAAGACATGGGTGGTCATCTTGGGGGGCTTTCTGGAACCACTACAGTCACTGTGAAGCTGACAGATGTTAATGACAACCCGCCGCACTTCACACAGAgcacCTGGTTGTTCTCTGTCTCCGAGTTGGCCGTGCCGGGGGCGGAGGTGGGCCGGATCTCAGCAACAGATGCTGACCTGGGAGAGAATGCCAAGCTGGAATATACCATTCTGGAGGGGGAGTCGGGCGACACCTTCAACATTACTGGGGTGAACCAGGAAGCCATCATCATCCTCAATAAGGCTGTGGACTACGAGAGCCGCAGTTCCTACTCTTTCTCTGTAGAGGTGCTGAACCCCACTGTGGACCCCCGCTTCCTGCGCCGTGGACCCTTCAAGGACCGCGCCTCCGTCCGAGTGGCCGTGCTGGATGCAGATGAGCCGCCGCGGTTCTCGCGGGCCCGTTATCGCATGGACGTGTCTGAGAACTGTCCTCCTGCTTGCACTGTTGGGCGGGTCAGCGCCGTGGACCCGGACACTGGACTCAACAACAACATCAGGTACTCCATTGATCCCCAGTCAGATCCGGAGGCACTGTTCCGCATCGCCCCAGACACCGGACTCATCACCACGGCTTCAGAGCTGGACCGCGAGCACGAGCAGTGGCACAACGTCACCATCATTGCCATGCAGAGAGACAACCCCAGCCAGTTGTCCAGAGTGGTGGTTGCAATTGAGACTCTGGATTTGAATGACAACGCCCCAGAACTGGACCGCCAGTACAACACTGCCATGTGTGACTCCGCCTCCTCTGGACAGgtGGTGCAGGTGTTGAGAGCTATTGATAGAGACGAGGGGGGGAATGACAGCACCGTCCATTTCAACATTCCTCCAGAGTCCAGCGCCGCACTCAACTTCAGCATCAGAGAGAGTGGAGGCCCCACTGCGAGCCTGGTGCTGGCCTCGCCCTTGCAGGCGCTGTCTCGCTCCTCCTCGTCCTCGCTCACCCTCCACGTGCCGCTGATCCTGAGAGACGGCTCGTCGGGCCTCACCAGCACCGGCACAGTCACCGTGTCCGTCTGCCCCTGCCTGAAAGGAGGAGCGAGGGCTGGGGAGAAGGAGAAGCAAAGCGAGGCTGAGTGGGAGAGGGAGACGGTGTGTCTTCCCCAGCACTCCTCGCTGCCCTCACCTGGACTCAGCACCGCCGCCCTGCTGGCTATTCTGGCATGCGTGGCCACACTTTTAGctgtcagtgctctctctctctccctgcgcAGACAGAAGCGGGACTCCCTCTCTCCGCTGGAGGAAGACGATGTCAGAGAGAACATCATTACATATGATGACGAGGGAGGTGGGGAGGCGGACACCGCTGCGTTTGACATCACGGCTCTCCAGAGCGCCCCCCACAGTGCACGCAGGGGGTACCGCACCCTCGACAGCAGGAATATACGCTACTCCCAGCGTGCCCAGGAAAAGGCACGGACGTACAGCAGCTGGGCCCAGTCTGGAGTTATTGACAACGGTCACCACAGCCAGGCAGCTCCCCTGTACGGACGCTTGTGCTACAGCAGCCAAACGCTCCCCGTGCTCCGCCGCTCGCAGGCCGCCTACGAGCCCGCCATGGCCGAGCTGGGCTACCGCTTCCCTGGGGGGCAGCCAGACCACTCCCTGGTAATCCAGAACCAGGGGGCAGTGGTCGGGCCACTGGAGCCAGGGTCATTGTATGTGGGACCCGGAGAGGCAGTGAACAGCTCCAGGGAGGGGACAGTGTCCCAGAATGGGGTCACCACCTCTGAAGGAGGAACGCCAAGAAAAAACGACACCAAGGAAGATTCGAGCAGCGATGCTCAGCAGAGCCAGGATCTGGACTGGAAGCGTAAGCTCATCCTGACCCGCTCTGACCCTCCTGCTCCTCCCCATCCCAAACAGGTGCAGTCGGACGCAGCCCCTCGTGAGCAGCAGACCCTGGTGCTGACCCGCTCTGGCTCGCTGGCCGCCGTGTCGGGCGTCTCGGGCAGCTGGACGTGCGATTCTGCCACTCTGCCCTCGGCAGGACGCCGCTCGTCGAGGTCTGGCCTCTCTCCGAAAAAGAGCGTCTCTGGGTCGACAGAAACCGGCATAGACAGTGTCAACGGTGGACGCAACTATGCCACCGTCCTGCAGGGGGAGCCGCAGAGGGACTACACAGGCAGTCTGGGCCGAGGCGGGCTGGAGATGGGCAGCAGTTTTGTGGTGTACCCGGAGGCGGCTGGAGGGGGCTTCATTGGGGACTGGAGGGACAGAGTTGGGATGGGAGGTTTTGGCCTGGGCAGAAGAGATATGACCCCCCAGCTGTTGCCCTATCCCAGCCAGGGCCGGGGGTCGTTTGCCGGGATCTTGGGTTATGGAGGTGCCTGGCCTTCAGGGCCCGAAGCAGCAGCTAGAGCAGCCTCTGCCGGAGGCGGTGGAGCAGCAGGGGGAGGCAGTGGTCACTCCCTGGCCTTGCGGGTGGGCGAGTTCCTGCGGCTACGCCTGGCCCAGGTAACGTTCGATCCCACGCAGCCGCCGTACGACTCGGTGCAGGTTTACGGTCTGGAAGGCACGGGTTCTCGAGCCGGGTCACTCAGCTCCTTGGAGAGCGAGGGGGACAAAGACGGGGAGAAGGAAGAGTGGGTCGGGGGTCTGGAAGAGTGGGGGCCGCAATTCCGCAAACTTGCCCAGCTGTTCCGAGAgcgggagaaagaaaaagacgaGGATAAGGATGAGGAAAAGACGCGGAAACGGAACGGCGAAGAGACCGGCGAGAAAGAGGAGCAGCTCGGAGATGAGAGGAGAGACAAAGActgaaagagtaaaagagaaagaaagagagagagggaggtgttAAGGGCGAAGGGACGATTTAAGAATGACGAGAGCGAGAATAATGGGACGAGAagtgaagagagaaagagatgaagagGAAGAGTAATGggtagagacagagaaaaacaagCGTGGGCAAGAGAGGtagacagtgagagaaaaatagagagagagagagaatgagagagatagaaaagagGCTATagagagaacgagaaagagaaagagagagagagagagtgattgaTGCAATTTAAAGCAATAAGTGCTGAAAAGCAGAAGCGTGAGCGCCGAAGCTAAAGACACAGAGGCTCTGTTTCGCTCTTCAGAGTATTTACCATTCTTTAAATGTGCCAGGCAGGGAGGGAGCGAACAAGTGAACgagcgagggagggaggagggaaaaaaaagaaaagaaaagaggctCATAGTGTCTTAGATTAGCTTCAATTCacaaagcgagagagaaagagagcatgaAAGAAAGACCTCGTACAAGAGATATTGAGATATTGCAGATGACTTGGaccttaaattatgtttttgggGCAACGTGCAAGACAATACAACCACTGGGGAGTCTGGGAGAAAGTAGGCTAGCCTAGCGCAGCCTGATAAGAAATACATAAGGGTGGGAGATAAAGGTTTTGTACAGAAATTGTTGATACATCCGCTGAGAAAAGCAGGAGAATGAATTATTCAGCCCACAGTGTCATTCCAAACGAAAGGTCTGAATATTTCAATCCCAAGTGAGCCTACACACCTACACTCACTCGAACACGAACACAAGAAAACGCGTATCCTCCAATGATGTTCTTcaattttagttatttatttttttatttcttgcctTTTTTCGATGCAAACATCGAGTCCCAATCTTTAAGGACTGAAGGTGGACTGCCAATAACTTCACCAGGAACTGATTTAATATGTGAAGCAAAAAGTAGGCCAAGTATGTGAAAAGGCAAAAAAGTGGTTTATAACGTGTAACGAATACAGAATGGTTAAAagtgtcaaaaaataaaaacgccaatttttctttttcttttttttttacgtttaaaTAAGGTCACCCTGTTGCTGGACTTGGGCTTGATGTGACAAGACAAGAGTCAGTGTTGAAAAATTGTTCGGAGTTGTAATTGTTGTAGGATGGAGTAAAGGTCAGAGAGCACCCTACATTTAATTCATTCCCAGTCGAAACAGCCATTAAACTGGAATTTTGGAGACACAAAATTTGCACACAAAAGTTTATGAATAATTCAGCAGATGAGGTGTtcactaatgtttttttatgtgaaatgGTTCATTGTAGAAAAACTGACTGACTTGGATTTCTTTATAGTGGTTATGCTAAGAAGCAGAGGACACCAtaacacaaatatacagtaccagtcataaGCATGGATTCACCTATTTTATTTCtatgatttttacattgtaaatgtattattgaaTCCTTAACAATGTACAAGAACACGTGCAGagttattctgtaaataaaatgacagatttgcacacataagaaataaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU189132 lncRNA upstream 131748 7202932 ~ 7203256 (+) True G139712
TU189130 lncRNA upstream 142600 7191908 ~ 7192404 (+) True G139710
TU188732 lncRNA upstream 247322 7086977 ~ 7087682 (+) True G139401
TU188725 lncRNA upstream 285275 7046418 ~ 7049729 (+) True G139395
XR_002651017.1 lncRNA upstream 295624 7031810 ~ 7039380 (+) False LOC111194296
TU189143 lncRNA downstream 304 7654837 ~ 7982297 (+) True G139720
TU189221 lncRNA downstream 365913 8020446 ~ 8020933 (+) True G139781
TU189223 lncRNA downstream 367850 8022383 ~ 8035973 (+) True G139782
TU189214 lncRNA downstream 384362 8038895 ~ 8042442 (+) True G139778
TU189228 lncRNA downstream 407197 8061730 ~ 8065226 (+) True G139787
XM_022677941.1 mRNA upstream 84871 7230536 ~ 7250133 (+) True LOC103025648
XM_007258057.2 mRNA upstream 150601 7164784 ~ 7184403 (+) True psmb5
XM_022677940.1 mRNA upstream 150601 7164885 ~ 7184403 (+) False psmb5
XM_007258067.2 mRNA upstream 172742 7160020 ~ 7162262 (+) True LOC103025339
XM_007258052.2 mRNA upstream 288706 7041560 ~ 7046298 (+) True LOC103044361
XM_022677945.1 mRNA downstream 33574 7688107 ~ 7693776 (+) True LOC107197863
XM_022677702.1 mRNA downstream 43828 7698361 ~ 7706542 (+) True LOC111194231
XM_022677947.1 mRNA downstream 54783 7709316 ~ 7717249 (+) True LOC103026260
XM_022677668.1 mRNA downstream 67207 7721740 ~ 7729314 (+) True LOC103026570
XM_022677948.1 mRNA downstream 87190 7741723 ~ 7911771 (+) True carmil3
TU188724 other upstream 288716 7041674 ~ 7046288 (+) False LOC103044361
TU188586 other upstream 1067617 6266816 ~ 6267387 (+) True G139282
XR_002651011.1 other upstream 1092433 6238156 ~ 6242571 (+) True LOC103028159
TU188563 other upstream 1174838 6159720 ~ 6160166 (+) True G139268
LOC111194289 other upstream 1191103 6143375 ~ 6143901 (+) True LOC111194289
TU189488 other downstream 1506800 9161333 ~ 9162505 (+) True LOC103030954
TU189503 other downstream 1568076 9222609 ~ 9223156 (+) False LOC103030224
TU189594 other downstream 1885242 9539775 ~ 9540810 (+) True G140062
TU189643 other downstream 2089165 9743698 ~ 9745355 (+) True G140103
TU189871 other downstream 2335385 9989918 ~ 9990296 (+) True G140258

Expression Profile