RNA id: XM_022677948.1


Basic Information

Item Value
RNA id XM_022677948.1
length 5312
RNA type mRNA
GC content 0.53
exon number 41
gene id carmil3
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 7741723 ~ 7911771 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

attccttCCCTGAAAACtcttcatttggATGAGATGTTAGTGGGATGGGAGGCAGTGCAGGAGGATTGCCTGGGCATTAGCAGCTCCTGATCGCAGGGAGAggagtgtagagagagagatagagagagagagagagggggaagatGGCATCGAAGGAGGGCTCAGCACCTGGCTTTCTGCCCATCAGCAGGGAGATGACTGAAAGCATCAGACGGGTTATCGACAAGCCATCCGTCAAGCTGGCCCGAGCCGTCAAAGCAGAGAACAAGAACGGCAAATCAGAAGACAGGATTTTGGTCCTGACAACCTGGCGGCTTTACCTCATGGCTCCCAAAATACCAACCAAGGTGGAACAATCCTTTAACTTCCTGGAGATCCGTGCAATGAGCCCTCATCCAGAGAACCAGgttgtCATAGAAACAGATAAGTCCACCTACTCCCTCAGGTTGCAGTCAAGTGACCACCTGGATCAGCTGCTCAGCCATGTCAACTTTGCTCTATCGCGCATCTTCAACAACTCCGTCTACACCCCCTCGATCTTCCAAGCAGATGGAGAGGTTTCCGACGGGGGTCATAAATTTTCCCCTAACTCAGAAACCTCAGTGGAGACCCAGAGGGCGTGTGggggCTTCTCAGAAACCTACGCGGCCCTGTGCGACTACAATGGCATCAGCTGTAAAGAGGAAGTGCAGTGGGATGTGGACACAATTTATCACTCTCAGGACAACAGAGAGTTTAACCTGTTGGACTTCAGTCACTTAGAAAGCAGGGACCTGGCCGTCATCGTGGCGTCCATGGCGTACAACACATGGTTCACCAAGCTCTACTGCAAAGACTTGCGCCTAggcTCAGAGGTAGTGGAGCAAGTCCTTCACACAATCAGTAAGTCCAGCAGCCTGGAGGATCTAACGCTGGAGAACGCAGGCCTGAAAGCagATTTCCCTCAGAAGATGGCAGCAGCCCTGGCAGAGAACCCGGCGTCTGTGCTGCACTCGCTCAACCTGGCCCACAACACACTGGACAATCAAGGAGTGTCAAATCTCATCCAGCAGGTGTGTCGGCTCAGCAAAGGCCTCCGTCTGCTCAACCTCGCCAAAACCTCGCTGTCCTCGAAGGGTGTGACGTCTCTGTCTCAGGCTTTATGCTCCAGCGACGACTACTCCAACTCTCTGCTGCATCTGGACCTGAGCAAAAATCCAGGCATTCTGTCAGGAGAGGACGCCACGAACCTGTATCTATTCTTGGCTCAGCCCAACTGCCTGGTGCATTTGGATCTGTCGGGTACGGACTGTGCAGTGGATTCATTGTTCGGAGCTCTGCTGCGCGGCTGCTGCGCCGACCTGTCTTATCTCAACCTCTCCAAGAACTCCTTCTCTCACAGGAAAGTCAGAGAAACTCTGCCCACCTTCCGTCAGTTCTTCAGCTCAGCGTTCAGCCTCACCCACCTCAACCTCTCCTCCATGAAGATGCCACCGGATGTGCTCAGGGCTCTCTTTCTTGGATTGTCCTCCAACCCTCACATCACTGACCTGCACCTGGATGTCAGTGGATGCGAGcTCAGGTCAGCAGGTGCAGCCGTCATCCAGGACCTGTTCCCTCAGGTGTCCTGCATCAGTACCCTAGACATCTCCGACAATGGCCTGGACTCTGATCTCCTCGCCGCCCTCCCGGCCTTCTCCCGACACCCTTCCCTCAAGCATCTGCTGCTGGGCAAGAACTTCAATGTGAAGGGCAGGGCACTGGACGAGATCCTGCTCAAACTGGTGCAGCTCGTACAagatgaggagtgtGGTCTGCAGAGCCTGTCCCTGGCGGACTCCAGGCTGAGATCTCGGGGTACGGTGCTGGTCAACGCGCTGGGCAGTAATGCATGCCTGAGGAAGGTGGACCTGAGTGGAAATGCCCTGGAGGATACAGGAGCCAGGATGCTGAGTAAAGCCCTGCAGATCAACACCACACTCAGaaGTGTGACGTGGGATCGGAACAATACTACAGCTACAGGGTTTCAAGATGTTGCACGTTCTTTGGAGCATAACTTCACACTCCAGTACATGCCTGTCCCGCTCAGTGATGTCACACAGGCGTACCGCAGCGCCCCCGAGAAGACAGAACAGGCCATGACTAAAATCCAGCGGGCTCTGCTGAGGAATAATCAGACTCAGCGATTCTCACAGAAGCAGGCTTTACGGCTGCACCAGGGCCTGGTCACCAGTACTGCTGAGCAGGTGATGGAGCGTCTGTGTGTGCGGGTccagcagcaggtgtgtgtgcTGAGAGGAACAGGTGAGGGGGAGGAGCTCCAGGCTGCCAGACAGGTTCTGAAGGAGGCCAGGAACTCTCGAGCGCTCTACCCCTCACTGTGTGAGCTGGCTCATGTGCTTTCTGTTGATGGACCTGTCAGACAAAGACTGGAGTCCCTGGCTGGAGAGCTGGCCAAAGCTGCTGATAAAGAGCTACAGGTGATTGTGGACTCTATGGTGTCTCTGTGTCGGGAGCTGTGTCCCCTCTCCACCGCTGCTGCAGAACagctttctcctcctctctcctccatCTCTGAGCGAGTCTCCATCCCTCGCTCCGCGATCCGCACTGCGCTGATGGAGAGAGCGGCCCAGGACATCAACAGAGCACTGGAAGAAGTGAAGCTGTCTGTGGTCTCCTATCTCACCAACTCTGTGGTGGATCAGATTCTCCAAGAGCTCTACGCCACTCACAAGTCTCTGCTTCATCAGGTCTCTCAGATGCGCCGGATGGACGACGGTGGCACGGCCAGGCGCACTCTTAGGCACGGAGACGTCCTGGACATCCCTGAGGACGACTTTGGCATCAGCATAGATACTATCGCCATTAAGAAGCGCAGCTCCAGAACGCGACGCATACGCCCCGTCTCCACCAGACTGAGTCTAGGTGAAGACCCAAACGCCTCTCCTTCACTCCCAGTGCCTCGTTCAGTTCCTCCTCTTTCTCGCTCGGCTTCGTGGGAAGGCTTGTCCACCCTGCCCACCCAGGGTTCACCTCTGCGCCATGTCACTCACGTCAGACCCCGCCCTCCAAGAAGACACAGGCCTGGTTACGCCCCTCCAGAGATGCATTCTTCTGAGAACGGTGGAGTCAACCTGCTGGATGACGGTCTTCCAGATTTCTACACCAAGAGGGTCTTACCAGACAgTCAGCTGTCCTCCCACCATCATGCTCAGGCTCTCAGGCGAAAGAAGAGACGCAGTGTGCTGTCCATCTTCTCAGGCTTCAGGAAGAACCGCAATTCAGCTTCCTTTCAGGACTCGGAGCCTGTAGGCCAGAGCGGGGCGTGTGGAGACGAGTGTCGCACCAATGCTGCCACAGAGAATGTATATTCTCAGGTTCTGCACCATAAGGACAGTGGTGGGGCAGATCCAGGGCGAGAGGGGGCTAACGGGAGGCTGGTGGGAGCTCAGAGAACCCCTCAGCTGCGTGGACGGACCATCCAGGGCATACCCCTGCCAGGAATGAGCGGGATCAGCCCCTCCTGCATCTTACAGAGACAACAGTCTCCTGAGTACAGCGAAGTGTTCTGCTCCTCAGAGGAGGTCAGCGTGGCCAGCAGAGACTCCTCCAGGCCTCCCGACTCACAGGCTGAAGGTCAGACGCCCCCTGTGGACAGACACGCTCAGTCCCAGGACCCAGACGCAGACGCTGACCCAGGAACAGCCTCAGACTCCCAGCCACGAGAGAGCAGACAGAGACCCGAGCCTCCTCCACAGAGCAGCAAGCCCAGCCTGGCCCACACCAGACAGCGCCATCTGGAGGAGAGCTCTGACAAATCTACAGAGGATTctgaaggagggagagagggtgGTGATGAGAAAGAGGAAAGGAGATGTCTGCAAGATCAACAGCGGAAAACAGACGGACAAACTCCCAAGCTTCCCATCCCTGAAAAGGTGTTTAATTCGAATGATTCACCTGAGAAATCTTCTGGTGCTTCTCCATCACGAGACTCAACCAATGCCAGCAGTGCACCGCCTCCAGTACCACCTGCCTCTGTGAAGCCTGTGCCCAATGCAGGAGACTCTACCAACCCTCAAGGTGATGAAGAAGAGCCCAGTTCAAACggagggcctccaaaacctcaCAGAAACCGAAAGGCACACTCATGTGAAGCAGGCATGGAGCAAGGCAGCCCCGGTGAACTGGAGAGGTCATCAGATCCAAAGCCCCCTGTGAAAAAACCCAGGCTTCCcccaaaaagaaacaaatctcTGGATTTTCCTGGTCAGCACAGTCCAGAGCCAGGCAACGGCAAAGCGTCATGACCAGACCGCTGTGATGAGCGGGAGATGTTCTTTTAAACAGGGAAAAACAGATGGCAGGAAGATACAGGATGAGAGAAGAGATGGTTGACTGGATGAATGGACAGACcaaactctctttctctgagacacattttcttctttactgactgactgtctctttctctctctctcctctctctctcttctctctctctctctctctctcacacacacacacacacacacacacaactacctGGTTGATTTGCCTGTAATTTATTGAGAGTGTTGCAGCATTCTATTagatctctttctctttctctctcatctaTGTACACTTCTCCCGTCCTGCCTCTCAATCTTAAGACAATCCTTGACTTGTGCTTAACTTAAAGGTACTGTGAGTAATAATAGAAGCATTAAAGGTACAATAAGCGATATTTCCACACTGCACTCCATAAGCCGTACAGTATACTTGCTTGCCTGGCTTGCTGTGACTCCGAATATGATGTAAGCTCCAGTATTACCCCAGTAATAGTCCGTGTTTCAATCTATCTATCCGTCCCTGTCGTGCAGGCCGCGAGCCTCCACCGCGTACCTCATTCCTGCAGCCGTGAAGTATTATCCAGTCTTCATGCCTTTGCATCAACGTTTGGAATTGGAAATTTTCCTTTATTGTACCTTTAACTCTGCGGAAGGATGATCTTTGTAAATACGGAAGATACGGAGCTGATTTTGCACTAATCACAGACTGGATAACGGCTCATCTCCGTAATATTTCTGTAACATTTCTGTAACATTTCTGTAACGGCTCTGACCGAGCATTACTGTCGTGAACTTTaagcttattgtttttttttgtttttgtttttgtagtaaGGACAACTGTGTCCCGACGGACGATAGCGACACAGCTGATACCCCTTTTTTCTGCCATTTTAACTGGATGAGGAGTGAGAGTTTGCTGGTTTTAAATGACCTCTATTTTCTACTGAAAGTGATGTAAATgtgaaatcaataaaaaggGAGAATCTCTATGCA

Function

GO: NA

KEGG:

id description
K20493 LRRC16, CARMIL; leucine-rich repeat-containing protein 16

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU189147 lncRNA upstream 81592 7628240 ~ 7660131 (+) False G139720
TU189178 lncRNA upstream 173153 7568367 ~ 7568570 (+) True G139750
TU189175 lncRNA upstream 201780 7539659 ~ 7539943 (+) True G139747
TU189166 lncRNA upstream 234366 7507052 ~ 7507357 (+) True G139738
TU189165 lncRNA upstream 265377 7475970 ~ 7476346 (+) True G139737
TU189221 lncRNA downstream 108675 8020446 ~ 8020933 (+) True G139781
TU189223 lncRNA downstream 110612 8022383 ~ 8035973 (+) True G139782
TU189214 lncRNA downstream 127124 8038895 ~ 8042442 (+) True G139778
TU189228 lncRNA downstream 149959 8061730 ~ 8065226 (+) True G139787
TU189234 lncRNA downstream 185527 8097298 ~ 8097743 (+) True G139792
XM_022677668.1 mRNA upstream 12409 7721740 ~ 7729314 (+) True LOC103026570
XM_022677947.1 mRNA upstream 24474 7709316 ~ 7717249 (+) True LOC103026260
XM_022677702.1 mRNA upstream 35181 7698361 ~ 7706542 (+) True LOC111194231
XM_022677945.1 mRNA upstream 47947 7688107 ~ 7693776 (+) True LOC107197863
XM_022677943.1 mRNA upstream 87190 7335004 ~ 7654533 (+) False LOC103025951
XM_022677950.1 mRNA downstream 37151 7948922 ~ 8014625 (+) True LOC103023286
XM_022677952.1 mRNA downstream 220515 8132286 ~ 8509323 (+) True clstn2
XM_022677953.1 mRNA downstream 660062 8571833 ~ 8573911 (+) True LOC111194298
XM_022677956.1 mRNA downstream 1111326 9023097 ~ 9025014 (+) True LOC103021839
XM_022677955.1 mRNA downstream 1111326 9023097 ~ 9024279 (+) False LOC103021839
TU188724 other upstream 695435 7041674 ~ 7046288 (+) False LOC103044361
TU188586 other upstream 1474336 6266816 ~ 6267387 (+) True G139282
XR_002651011.1 other upstream 1499152 6238156 ~ 6242571 (+) True LOC103028159
TU188563 other upstream 1581557 6159720 ~ 6160166 (+) True G139268
LOC111194289 other upstream 1597822 6143375 ~ 6143901 (+) True LOC111194289
TU189488 other downstream 1249562 9161333 ~ 9162505 (+) True LOC103030954
TU189503 other downstream 1310838 9222609 ~ 9223156 (+) False LOC103030224
TU189594 other downstream 1628004 9539775 ~ 9540810 (+) True G140062
TU189643 other downstream 1831927 9743698 ~ 9745355 (+) True G140103
TU189871 other downstream 2078147 9989918 ~ 9990296 (+) True G140258

Expression Profile