Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_022677980.1 |
| length | 935 |
| RNA type | mRNA |
| GC content | 0.47 |
| exon number | 5 |
| gene id | LOC111194303 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_035912.1 |
| NCBI id | CM008315.1 |
| chromosome length | 41032606 |
| location | 10190811 ~ 10212330 (+) |
| genome version | Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome |
| species | mexican tetra (Astyanax mexicanus) |
| id | name | namespace |
|---|---|---|
| GO:0006810 | transport | biological_process |
| GO:0005576 | extracellular region | cellular_component |
| GO:0036094 | small molecule binding | molecular_function |
| GO:0005215 | transporter activity | molecular_function |
| GO:0008289 | lipid binding | molecular_function |
| id | description |
|---|---|
| K03098 | APOD; apolipoprotein D and lipocalin family protein |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU189897 | lncRNA | upstream | 42018 | 10098168 ~ 10156048 (+) | True | G140274 |
| XR_453208.3 | lncRNA | upstream | 68022 | 10125320 ~ 10130044 (+) | True | LOC103034722 |
| TU189895 | lncRNA | upstream | 94609 | 10098168 ~ 10103457 (+) | False | G140274 |
| TU189868 | lncRNA | upstream | 255787 | 9941028 ~ 9942279 (+) | True | G140255 |
| TU189864 | lncRNA | upstream | 271490 | 9926309 ~ 9926576 (+) | True | G140251 |
| TU189939 | lncRNA | downstream | 64547 | 10276877 ~ 10278511 (+) | True | G140305 |
| TU189970 | lncRNA | downstream | 95090 | 10307420 ~ 10307715 (+) | True | G140331 |
| TU189975 | lncRNA | downstream | 98770 | 10311100 ~ 10345471 (+) | True | G140336 |
| TU189982 | lncRNA | downstream | 120498 | 10332828 ~ 10335069 (+) | True | G140341 |
| TU190071 | lncRNA | downstream | 148661 | 10360991 ~ 10361377 (+) | True | G140391 |
| XM_007234367.3 | mRNA | upstream | 10379 | 10172944 ~ 10187687 (+) | True | copa |
| XM_007234368.3 | mRNA | upstream | 28369 | 10163810 ~ 10169697 (+) | True | pex19 |
| XM_022677977.1 | mRNA | upstream | 50339 | 10130895 ~ 10147727 (+) | True | LOC103041077 |
| XM_022677976.1 | mRNA | upstream | 293952 | 9897076 ~ 9904114 (+) | True | tmem53 |
| XM_007229310.3 | mRNA | upstream | 309489 | 9884209 ~ 9888577 (+) | True | LOC103036973 |
| XM_015601595.2 | mRNA | downstream | 7243 | 10219573 ~ 10234260 (+) | True | samd7 |
| XM_007234365.3 | mRNA | downstream | 7243 | 10219573 ~ 10234259 (+) | False | samd7 |
| XM_007234358.3 | mRNA | downstream | 23392 | 10235722 ~ 10246002 (+) | True | sec62 |
| XM_007234361.3 | mRNA | downstream | 59684 | 10272014 ~ 10276220 (+) | True | gpr160 |
| XM_022677984.1 | mRNA | downstream | 138566 | 10350896 ~ 10369990 (+) | False | phc3 |
| TU189875 | other | upstream | 204000 | 9993586 ~ 9994066 (+) | True | G140262 |
| TU189871 | other | upstream | 207770 | 9989918 ~ 9990296 (+) | True | G140258 |
| TU189643 | other | upstream | 452711 | 9743698 ~ 9745355 (+) | True | G140103 |
| TU189594 | other | upstream | 657256 | 9539775 ~ 9540810 (+) | True | G140062 |
| TU189503 | other | upstream | 974910 | 9222609 ~ 9223156 (+) | False | LOC103030224 |
| TU189976 | other | downstream | 98770 | 10311100 ~ 10326919 (+) | False | G140336 |
| TU190105 | other | downstream | 183190 | 10395520 ~ 10399976 (+) | True | G140402 |
| TU190104 | other | downstream | 186051 | 10398381 ~ 10399976 (+) | False | G140402 |
| XR_001518341.2 | other | downstream | 214936 | 10427266 ~ 10443367 (+) | False | sppl2b |
| TU190266 | other | downstream | 586215 | 10798545 ~ 10798891 (+) | True | G140520 |
