RNA id: XM_022678001.1


Basic Information

Item Value
RNA id XM_022678001.1
length 3128
RNA type mRNA
GC content 0.49
exon number 20
gene id LOC103039831
representative False

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 10530991 ~ 10552601 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCCAAATATTCCCCAACACTATACTGGCTGACCTGTGTGCGTTTACACATGGATGAAGCTGTGTGCGTAGCCTGTGAAGCAAAactgtgtaaataataataacgcaGTCTTAATATCTCCAAAGTGCGTGTTTTCttgaaaatataattaaaatgtagttAGATTTGTGAGTATCGACCACCGCCTTTGTCTCTCCTCTTCTCGCCTGTTTTCCCGCGGAGTTCCTCCCCCTGCGGCGCTGGGCGGAGTTTCATACCGAACCAGACGCTCCTTTCGTCGGATTCGTTTCGACTTGACTCCCCGGGGCTTACGGCTAAATAAATTCACACTAAAACACGTTAAAATACTTCTCACAAACGCCGTACTGACCGTGAAGGGGACCCGCGGCGATCTGTCCAAAAACAGGTCTAAGGCCCTCTGTAGCCGCGTTCTGTTGCGTGGCGTTGAAGCCGCCTTAACTCTGTCAGCATGaatggcagcagcagcatggcTGTCACCCAGGGTGTTCGGATCAAAATCGACCCAGATGATGATGTGTGGAGTAAAGAGGACTGTCTGATGCTGCTGGAGAGGATCAGGACTCTACTGCCTGATGGGGACGCTATGAAATACAAGACCACAGAGTCTCATTTTGACTGGGAGAAGGTGGGCTTTGGAAACTACACAGGGGACATGTGCAAGCAGAAATGGCAGAAAGTTTCCACAGAGGTGCGTAAATACAGGACAATGACAGAGCTTATTGTGGATGCCATAGAATACGTGAAGAACCCTTACAAAGGAAAGAAACTGAAGACCCATCCAGACTTTCCAAAAAAGCCCCTCACACCCTACTTTCGTTTCTTCATGGAGAAAAGAGCCAAGTATGCAAAAATCCACCCAGAGATGAGCAACCTAGATCTTACCAAAATCCTGTCCAAAAAGTACAAGGAGCTCCCGGAAAAGAAAAAGCTCAAATACATTCAGGAATTCCAGAGGGAGAAGGAATCGTTTGAAAAGAACATGGCACGGTTCAAAGAGGACCATCCTGATTTGATAGAAGAACGAAAGAAATCAGACCTCCCAGAGAAGCCCAAAACCCCTCAGCAGCTCTGGTACAACCATGAGAAAAAAACCTTCATGAAGCTTCACCCAGAtGTAAGCCAAAAAGAGCTGAAGGAAGCTTTACGCAGACAGTGGTCTCAACTCTCTGAcaagaaaaggctgaaatggATCAGCAAAGCCCTGGAGCTGCAGAAAGACTATGAGGACAGCTTAAAGGCCTACCATGAAGCGCATCCAGACTCAAACTCAGATGAGCACGTTAAGTCTGTGTTAACAAAGGCTGAACGGCAGCTCAAGGACAAGTTTGATGGCCGGCCTACCAAACCACCACCAAACGGTTATTCTCTATATTGTGCCGAGCTGATGGTAAACATGAAGGATGTGCCAAGTACAGAgaggatggtgctgtgcagtaAGCAGTGGAAAATGATGACCCAGAAAGAGAAGGACATGTTCCAGAAGCGATGTGAACAGAAAAAGAAGCAGTATGAGATTGACCTTCAGAGGTTTCTTGAGAGTCTgccagaggaggagagagatcgagtactgatggaggagaagctGGGAGGCACTAGGCTGAGTTTGGTAGGAGCTGGCAGCCCTGCTGGATCTAAATCCCCTTCAAGCAAGGAACGAGTTCGAGACCCTGAACTGGACCACTGGGTACAGGGGTTACCTAAAGATAGACGGGATGGGAAGAAGAAGTTGACAACGCGCCTCCCAGATACTCCTAAAACACCGGAGGAGATGTGGCAGCAGAGTGTAATAGGGGACTACCTGGCCAAATATAGGAGCGATAGGAAGAAAGCACAGACCGCCATGGAAGCCGCATGGAAAGCcatggaaaagaaagagaagatcCCCTGGATCAAGAAGGCGGCTGAGGACCAGAAGCGATACGAGGTTCAGTACCGGACTGTGAGAGAGCTGCTGGACATGAGGATTGTCCCATCAGGACAGGGGCAAAAAAAACCCAAGTTTGACGGGGAGCCCAAGAAACCTCCTGTGAGTGGTTATCAGATGTTCTCTCAGGAGCTGTTGACGAACGGAGAGCTGAACCACTTCAGTCTGAAGGAGCGCATGGTGGAGATCGGCAAGCGCTGGCACAAGCTCAACCAGACCCAGAAGGACAAGTACAAGAAACAGGTGGAGGAGCAGCAGCTTGAATACAAAGCAGAGCTGGAGGTGTGGGTGAAGtctctctctcctcaggaGCGGGCGGTTTATAAGGAGTTTTCTTGTGCGAAACGGCGAAGTACGACAAAGACTCAAGCTCCCAGCGCTAAAGTTCGTGTTACCAAGGGGAAGGCGGACACATCAGACTCAGATGAAGAGGACGATAAGACAGACACATCAGACTCTGAGGATGAGGACGAGGAGTCCGATGCTAGCACAGATAGCgaggatgatgaggatgatgacgAGAACGACGATGAGGAGGATGACGAGGAAGATGAGGAAGACCAATCAGAGGGTTCAAGCAGCTCAACCGAAGACAGCAGTGACTCTGATTCGGACTAACAAACCTCACCCCCTCAAAGGTGGGGGGGCTGTGCGGGACACGCCCCCTAATAGTATCCCTCCCTGACTACAGAGGGGGGCTCAGTAGCTGTGAGCACACAGCATGCGGTGAAAAGTCTCtcacgctctctttctctccgtctctctgttCAGCGAGAGGCTCGGGTCTCGGAAGGGTAACGGCTCTTTTGCCCTCAACACGTCCACTTCACCGACTCCAAGTCAGCCGGACAACTCCTGTTATAAAGAGCTGTGTTACTTGTGTTATTGAAGCATTTTTATTGCCTTTATATAGGTGTGTTATTAAATCTGTGTTGCCTGTTCCTTTTTTAAAGACGCATTTGATAAAGCGATttaagaattagttttttttgatGTGTCAGCCTTGTTCTGAGGTGgacagaggaagaagaggacTTTCGGAAACGGAGGTAGTGGAGGAGAGTGACCTAGCTGCTTGTATTTGCATCCCTCAGCCGGGGCGTTGAGGCCCAGAGGGCTGTTCCTGTTATGTCTGTTCGTTCTTTGGACAGGTCCTCTGCAATAAATGCACCTTTTCTCTTTTA

Function

GO:

id name namespace
GO:0003682 chromatin binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU190157 lncRNA upstream 58001 10472723 ~ 10472990 (+) True G140444
TU190123 lncRNA upstream 66307 10463997 ~ 10464684 (+) True G140418
TU190110 lncRNA upstream 111959 10417199 ~ 10419032 (+) True G140405
TU190108 lncRNA upstream 114226 10413544 ~ 10416765 (+) False G140404
TU190107 lncRNA upstream 114720 10413544 ~ 10416271 (+) True G140404
TU190183 lncRNA downstream 20567 10573168 ~ 10575778 (+) True G140460
TU190184 lncRNA downstream 20567 10573168 ~ 10575778 (+) False G140460
TU190185 lncRNA downstream 20567 10573168 ~ 10575778 (+) False G140460
TU190191 lncRNA downstream 186116 10738717 ~ 10738997 (+) True G140466
TU190261 lncRNA downstream 203303 10755904 ~ 10756240 (+) True G140515
XM_022677992.1 mRNA upstream 6554 10485722 ~ 10524437 (+) True LOC103040576
XM_022677994.1 mRNA upstream 6554 10485722 ~ 10524437 (+) False LOC103040576
XM_022677993.1 mRNA upstream 6554 10485722 ~ 10524437 (+) False LOC103040576
XM_022677995.1 mRNA upstream 6554 10485723 ~ 10524437 (+) False LOC103040576
XM_007236323.3 mRNA upstream 86451 10427270 ~ 10444540 (+) True sppl2b
XM_022678004.1 mRNA downstream 5856 10558457 ~ 10680089 (+) True LOC103042199
XM_022678005.1 mRNA downstream 5857 10558458 ~ 10680089 (+) False LOC103042199
XM_022678006.1 mRNA downstream 130987 10683588 ~ 10747230 (+) True LOC103039003
XM_022678007.1 mRNA downstream 130995 10683596 ~ 10750675 (+) False LOC103039003
XM_015603253.2 mRNA downstream 652949 11205550 ~ 11308230 (+) True LOC103038209
XR_001518341.2 other upstream 87624 10427266 ~ 10443367 (+) False sppl2b
TU190105 other upstream 131015 10395520 ~ 10399976 (+) True G140402
TU190104 other upstream 131015 10398381 ~ 10399976 (+) False G140402
TU189976 other upstream 204072 10311100 ~ 10326919 (+) False G140336
TU189875 other upstream 536925 9993586 ~ 9994066 (+) True G140262
TU190266 other downstream 245944 10798545 ~ 10798891 (+) True G140520
LOC111194305 other downstream 760932 11313533 ~ 11314374 (+) True LOC111194305
LOC103039058 other downstream 785360 11337961 ~ 11338482 (+) True LOC103039058
LOC103029197 other downstream 825521 11378122 ~ 11378859 (+) True LOC103029197
LOC103029510 other downstream 827381 11379982 ~ 11381020 (+) True LOC103029510

Expression Profile