RNA id: XM_022678038.1


Basic Information

Item Value
RNA id XM_022678038.1
length 2966
RNA type mRNA
GC content 0.48
exon number 9
gene id LOC103030385
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 12708110 ~ 12732368 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CATCACCCTCACCCTACATACTGCAAAGACCTTTACAACAACAGACCCCATACAGACAGGAAGCAATCAGAAGGTTCTGAAACAGACAGTTCCAGTGTGGAGAGGCTGTGAAGGAGGACAGGATGAGGGCACTGCTGTTCTCCCTGGCTTTGCTGGCCTCTCTGCAGGCTTTCCAGGCCGCCTCTGGTCCCAATCCAAAAGCTGTATCAGCGGACACTCTCAAACGACTGTCTTTAGAAGGAGAGAAGCTTGTGGATGAGGAGGTAAGGAGAGCCCTCTATGGTGTTAAGCAGATGAAAGAGGTGATGGCCAGAAACGAGGAGAAGCACGAGCACCTGATGAAGTCCCTCCGGAACAgtggagagaagaagaagGGGGCAGCAGAGATGGCTGAGGATGTGGTAAAGAAGTTGGATGAGGCAGAGCAGCACTGTAAGGACAGTCTGAAGTCTGCCTGGGAGGAGTGCAGGCCCTGTCTGGAGGACACCTGCAAGAACTTCTACACCAACAGCTGCCGGCGCGGCTTCGCCACATTCTCCAATAAGctAACAGGCTTCTTCCGCAGGGTGAGTGCCCGCTTTGGCTCGCGAGATTCTCGGGATGAGCTTGAAATGAACCAGAGTGATGGGAGCCCTGAACTGGATGCTGTGAAGATCGAGGAGTCGTTCAGCTCCCTGCTGACTAAGGTGGGCAACCTGGTGAACCGTAGCATGGTGCTGGTGTCCCGCTTCCATAGGCAGCTGGACCAGGCGCTGCGGAAGGCCTTCGTTCCAGAGCTTCAGGAGGCGGAGGACAGTGTGGCGCTCATCCCTATGCCTGGAGATGACCTGGACTCTGCCTACCTGCAAGGTGTGGGCTTGGATGACGTGCTGGAATCCTTCTTTGACTTTGGAAGGAGTTTGACGGAGGAGTTCAGTGCAGTGGTCACCCAGGCGTTTGGCAACGTGCACAGCGCATTGGAGgaggcagagaaagaaagagAGAAGCAGCTGTTTCCAGTGTTCTTCCACAAGAGGAAGCTGTGCAGAGATCTGCGCAGACAGTCTGCAGAGTGCTGGCAGCTCCAGAACAAGTGTGAAGCCTGCCAGGGAACCCTGCTCGCTGagTGTCCGAGTGTACGGGAGCTGCACGTTGAGCTAGACGAGGTGTCGGAGCTGCTGGAGGTCTCTAAGCAGCAGTATGAGGAGGTGCTGGGCATCGCGCAGCGTCACACCGAGGACACTGTGGGCTGGCTTAACAACATGGCTGCAGAGTTCGACTGGGTGGCTGAGCTGGTCCACGACAACACCACGCCAGAGAACATCTTCAGCATCACCAGGGTGGTGACTGAAGAGGATGCTAACATGCCAGCAGCAGAAACCAAGGTGGAGGTGAACATCCTGAACGCTCCACCTCTTTCCCTCAGTGTGCCTGCAGGACTGCAGCTACAGGACCCCGCCTTCATCCAGTATGTGGCTCATGAGGCTCTGGGGCTGTATAAGCAGAAGTCCAGGCAGGAAGATGCTTGAGGCTGCCTGCAGGAGAAACGTCACTTTGCGCCTGGATAAAGTACAGTTCACCTGTAGCGTATATGTAAAagtattatgtagtaaattatttaaacatgtgaagactttttattgcattgtatttatcttagatatacagtattttgtcatTCAATATACACTGATCTATACAattccaaaagtcatggaacattGTCTCTTGCTTATCTGTTGGCATTGGACAATTCTAGACAGACACAGCCGGTCTCAAAATTATTACCACCAACGGATCTGGCCGCTCTGGGTGGTAAATGTCTTCtgtagccctatccggatgggattagtatctaaaaaacatgaggaccagtgagttttttggctttctcgatcacatgacatcatcgcgttcagtagcttaATTACAGTGTGTGGCAGGGGACAAACAGCTATCTTAGTAAACATGAGgcgacaaaactcagagatgtgcgtccggatgggaataaaatgaCCGGAGGACCatagagttcagcaaaaaacagtcgGTAATTCAGTGAGAAAAAcgcgtacatggtcgttctggaagggaataaaatcacagaggaccacccataaaagagaaaattaccccaggaccccctaagaaactaatcccgtccggctAGGGCTTATGATGTGTTACCGGTAAACATGTGACACTTTGGCAGGGCTCCAGACAAAattttttctcagctgtccCAAAGATTTATAGACGCCATCCCGAACTGAAAATCATCcgtccaaattttttttggtttctttttatttttgttgtttcttcCTTGACTATATGCAACTCCTACTCTTGCAATCTTACTAGTAACCTGATTGGCTCCATGATAAaaggcagattttttttctttatctgtaaacagacTTTGGGCTAAGTAATAGGAAAACATACAGTCATATTTTAATCAGCAGATTATCTCCTCATAAACATCGTATAACCAGTTTCACTGCACACATATTTGTCATCCAGAAAAAGTTTTATTCTCGTGCTAAAAGCGCTATTATTACCGTCTCCAGGACAATGGGACCATGTTAGTCTGGAGCCCTGTTGTAGATCGAGGATCGAGATCAAGTTAAATCCTGCTACAGAAATTACAGAAAATGGAATGTCCATCCATTTGGCACACACCATTAGTCCTTTCtacgccttgccatgagcatgttggccaTTCTTTAACCTCtctcacaagatatcaccttGTTAATTTATAAAGAAGTGGGTGCTCTGAGGTAACACTTGATCACATGATCACATTCATAATTATATACTGCCCTTCCATGAACTTTGGCGCGTCGGTGTATATCAGGGTACAAAGAGTTAAGAATTAATTTGCTCATTATATCACTTACATTTCAAAGCATATAACATGTATTTCGGAAGTCAAGACTcttctgtaataaataaagtgtcAAACACAAGCTGATAATACA

Function

GO:

id name namespace
GO:0008219 cell death biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU191007 lncRNA upstream 96020 12611298 ~ 12612090 (+) True G141075
TU191006 lncRNA upstream 98608 12608646 ~ 12609502 (+) True G141074
TU190971 lncRNA upstream 221539 12486280 ~ 12486571 (+) True G141046
TU190857 lncRNA upstream 238988 12468336 ~ 12469122 (+) True G140957
TU190855 lncRNA upstream 261327 12444730 ~ 12446783 (+) True G140955
TU191023 lncRNA downstream 5874 12738242 ~ 12785737 (+) True G141087
TU191040 lncRNA downstream 82499 12814867 ~ 12816236 (+) True G141099
TU191035 lncRNA downstream 111814 12844182 ~ 12860327 (+) True LOC103029537
TU191132 lncRNA downstream 252499 12984867 ~ 12990434 (+) True G141178
TU191141 lncRNA downstream 298404 13030772 ~ 13033593 (+) True G141185
XM_022678034.1 mRNA upstream 243463 12179700 ~ 12464647 (+) True LOC103027534
XM_022678036.1 mRNA upstream 243463 12248945 ~ 12464647 (+) False LOC103027534
XM_022678035.1 mRNA upstream 366531 12179687 ~ 12341579 (+) False LOC103027534
XM_022678033.1 mRNA upstream 535644 12132187 ~ 12172466 (+) True LOC103028579
XM_022678028.1 mRNA upstream 780362 11866450 ~ 11927748 (+) True LOC103028056
XM_007235293.3 mRNA downstream 110430 12842798 ~ 12847180 (+) False LOC103029537
XM_007235294.3 mRNA downstream 110432 12842800 ~ 12847180 (+) False LOC103029537
XM_022678039.1 mRNA downstream 661009 13393377 ~ 13437203 (+) True LOC103030306
XM_007260179.2 mRNA downstream 1064026 13796394 ~ 13846951 (+) False rgs20
XM_007260180.2 mRNA downstream 1064026 13796394 ~ 13846951 (+) False rgs20
TU190827 other upstream 326556 12378996 ~ 12381554 (+) True G140930
TU190829 other upstream 467485 12237988 ~ 12240625 (+) True G140931
LOC111194237 other upstream 1252100 11455485 ~ 11456010 (+) True LOC111194237
LOC111194307 other upstream 1255504 11451935 ~ 11452606 (+) True LOC111194307
LOC111194236 other upstream 1257167 11450374 ~ 11450943 (+) True LOC111194236
TU191019 other downstream 9105 12741473 ~ 12743453 (+) True G141086
TU191033 other downstream 110446 12842814 ~ 12849942 (+) False LOC103029537
TU191361 other downstream 1123235 13855603 ~ 13858605 (+) True G141361
TU191433 other downstream 1448297 14180665 ~ 14200998 (+) True G141410
TU191577 other downstream 1795772 14528140 ~ 14530296 (+) True G141495

Expression Profile